Experiment: plant=Cucumber; plant sample=CP3; plant location=NA
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS01815 and LU632_RS01820 are separated by 262 nucleotides LU632_RS01820 and LU632_RS01825 are separated by 326 nucleotides LU632_RS01825 and LU632_RS01830 overlap by 7 nucleotides LU632_RS01830 and LU632_RS01835 are separated by 171 nucleotides
LU632_RS01815: LU632_RS01815 - PAAR domain-containing protein, at 350,037 to 350,363
_RS01815
LU632_RS01820: LU632_RS01820 - hypothetical protein, at 350,626 to 350,874
_RS01820
LU632_RS01825: LU632_RS01825 - IS5 family transposase, at 351,201 to 351,986
_RS01825
LU632_RS01830: LU632_RS01830 - IS1 family transposase, at 351,980 to 352,677
_RS01830
LU632_RS01835: LU632_RS01835 - transposase, at 352,849 to 353,495
_RS01835
Position (kb) 351
352 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 350.211 kb on - strand, within LU632_RS01815 at 350.276 kb on + strand, within LU632_RS01815 at 350.277 kb on - strand, within LU632_RS01815 at 350.315 kb on - strand, within LU632_RS01815 at 350.319 kb on + strand, within LU632_RS01815 at 350.319 kb on + strand, within LU632_RS01815 at 350.351 kb on + strand at 350.351 kb on + strand at 350.352 kb on - strand at 350.352 kb on - strand at 350.375 kb on - strand at 350.434 kb on + strand at 350.434 kb on + strand at 350.434 kb on + strand at 350.434 kb on + strand at 350.434 kb on + strand at 350.435 kb on - strand at 350.467 kb on - strand at 350.490 kb on + strand at 350.556 kb on - strand at 350.556 kb on - strand at 350.556 kb on - strand at 350.556 kb on - strand at 350.612 kb on - strand at 350.612 kb on - strand at 350.637 kb on + strand at 350.637 kb on + strand at 350.638 kb on - strand at 350.667 kb on + strand, within LU632_RS01820 at 350.667 kb on + strand, within LU632_RS01820 at 350.668 kb on - strand, within LU632_RS01820 at 350.676 kb on + strand, within LU632_RS01820 at 350.676 kb on + strand, within LU632_RS01820 at 350.677 kb on - strand, within LU632_RS01820 at 350.775 kb on + strand, within LU632_RS01820 at 350.776 kb on - strand, within LU632_RS01820 at 350.865 kb on + strand at 350.873 kb on - strand at 350.884 kb on + strand at 350.884 kb on + strand at 350.885 kb on - strand at 350.885 kb on - strand at 350.885 kb on - strand at 350.885 kb on - strand at 350.964 kb on + strand at 350.964 kb on + strand at 350.965 kb on - strand at 350.994 kb on + strand at 351.126 kb on + strand at 351.128 kb on + strand at 351.128 kb on + strand at 351.128 kb on + strand at 351.129 kb on - strand at 351.129 kb on - strand at 351.129 kb on - strand at 351.129 kb on - strand at 351.129 kb on - strand at 351.168 kb on - strand at 351.168 kb on - strand at 351.168 kb on - strand at 351.802 kb on - strand, within LU632_RS01825 at 351.802 kb on - strand, within LU632_RS01825 at 352.702 kb on + strand at 352.747 kb on + strand at 352.748 kb on - strand at 352.775 kb on + strand at 352.775 kb on + strand at 352.775 kb on + strand at 352.776 kb on - strand at 352.778 kb on - strand at 352.778 kb on - strand at 352.788 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Cucumber; plant sample=CP3; plant location=NA remove 350,211 - LU632_RS01815 0.53 -1.6 350,276 + LU632_RS01815 0.73 +2.1 350,277 - LU632_RS01815 0.73 -1.3 350,315 - LU632_RS01815 0.85 -0.6 350,319 + LU632_RS01815 0.86 -1.2 350,319 + LU632_RS01815 0.86 -2.1 350,351 + +0.0 350,351 + -0.8 350,352 - +0.9 350,352 - +3.1 350,375 - -0.3 350,434 + +0.1 350,434 + -1.8 350,434 + +0.9 350,434 + -0.1 350,434 + -2.6 350,435 - -1.0 350,467 - -0.6 350,490 + +0.5 350,556 - -0.0 350,556 - -0.0 350,556 - -0.5 350,556 - -0.3 350,612 - -0.0 350,612 - +0.4 350,637 + -0.7 350,637 + -0.7 350,638 - -0.1 350,667 + LU632_RS01820 0.16 +0.0 350,667 + LU632_RS01820 0.16 +1.0 350,668 - LU632_RS01820 0.17 +0.1 350,676 + LU632_RS01820 0.20 -1.2 350,676 + LU632_RS01820 0.20 -1.3 350,677 - LU632_RS01820 0.20 +0.6 350,775 + LU632_RS01820 0.60 +0.4 350,776 - LU632_RS01820 0.60 -0.3 350,865 + +0.8 350,873 - -2.5 350,884 + -0.3 350,884 + +1.8 350,885 - +0.2 350,885 - -1.2 350,885 - +1.3 350,885 - +0.1 350,964 + -1.3 350,964 + -0.1 350,965 - -0.9 350,994 + +1.0 351,126 + +1.2 351,128 + +1.1 351,128 + +0.1 351,128 + -0.9 351,129 - -1.0 351,129 - -0.5 351,129 - +0.3 351,129 - +0.4 351,129 - -0.9 351,168 - -0.0 351,168 - +2.7 351,168 - -0.5 351,802 - LU632_RS01825 0.76 -0.7 351,802 - LU632_RS01825 0.76 -1.0 352,702 + +3.6 352,747 + -0.8 352,748 - -0.0 352,775 + +0.3 352,775 + -1.8 352,775 + +1.0 352,776 - -1.2 352,778 - -1.5 352,778 - -1.6 352,788 + -0.1
Or see this region's nucleotide sequence