Experiment: plant=Cucumber; plant sample=CP3; plant location=NA
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS01385 and LU632_RS01390 are separated by 0 nucleotides LU632_RS01390 and LU632_RS01395 are separated by 36 nucleotides LU632_RS01395 and LU632_RS01400 are separated by 11 nucleotides LU632_RS01400 and LU632_RS01405 are separated by 85 nucleotides LU632_RS01405 and LU632_RS01410 are separated by 8 nucleotides
LU632_RS01385: LU632_RS01385 - hypothetical protein, at 288,727 to 289,080
_RS01385
LU632_RS01390: LU632_RS01390 - TIGR03758 family integrating conjugative element protein, at 289,081 to 289,209
_RS01390
LU632_RS01395: LU632_RS01395 - TIGR03745 family integrating conjugative element membrane protein, at 289,246 to 289,623
_RS01395
LU632_RS01400: LU632_RS01400 - TIGR03750 family conjugal transfer protein, at 289,635 to 289,724
_RS01400
LU632_RS01405: LU632_RS01405 - TIGR03749 family integrating conjugative element protein, at 289,810 to 290,676
_RS01405
LU632_RS01410: LU632_RS01410 - TIGR03752 family integrating conjugative element protein, at 290,685 to 292,199
_RS01410
Position (kb) 289
290
291 Strain fitness (log2 ratio) -2
-1
0
1
2 at 289.000 kb on - strand, within LU632_RS01385 at 289.215 kb on - strand at 289.227 kb on - strand at 289.227 kb on - strand at 289.328 kb on + strand, within LU632_RS01395 at 289.329 kb on - strand, within LU632_RS01395 at 289.332 kb on + strand, within LU632_RS01395 at 289.332 kb on + strand, within LU632_RS01395 at 289.333 kb on - strand, within LU632_RS01395 at 289.415 kb on - strand, within LU632_RS01395 at 289.420 kb on - strand, within LU632_RS01395 at 289.489 kb on - strand, within LU632_RS01395 at 289.489 kb on - strand, within LU632_RS01395 at 289.495 kb on - strand, within LU632_RS01395 at 289.715 kb on + strand, within LU632_RS01400 at 289.936 kb on - strand, within LU632_RS01405 at 289.936 kb on - strand, within LU632_RS01405 at 289.983 kb on + strand, within LU632_RS01405 at 290.137 kb on + strand, within LU632_RS01405 at 290.138 kb on - strand, within LU632_RS01405 at 290.248 kb on - strand, within LU632_RS01405 at 290.462 kb on + strand, within LU632_RS01405 at 290.468 kb on + strand, within LU632_RS01405 at 290.468 kb on + strand, within LU632_RS01405 at 290.469 kb on - strand, within LU632_RS01405 at 290.473 kb on - strand, within LU632_RS01405 at 290.487 kb on + strand, within LU632_RS01405 at 290.593 kb on + strand at 290.594 kb on - strand at 290.629 kb on - strand at 290.713 kb on + strand at 290.714 kb on - strand at 290.936 kb on + strand, within LU632_RS01410 at 290.936 kb on + strand, within LU632_RS01410 at 290.998 kb on + strand, within LU632_RS01410 at 290.998 kb on + strand, within LU632_RS01410 at 290.999 kb on - strand, within LU632_RS01410 at 291.306 kb on - strand, within LU632_RS01410 at 291.441 kb on + strand, within LU632_RS01410 at 291.503 kb on + strand, within LU632_RS01410 at 291.503 kb on + strand, within LU632_RS01410 at 291.504 kb on - strand, within LU632_RS01410 at 291.504 kb on - strand, within LU632_RS01410
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Cucumber; plant sample=CP3; plant location=NA remove 289,000 - LU632_RS01385 0.77 -0.5 289,215 - -0.6 289,227 - -1.1 289,227 - -1.4 289,328 + LU632_RS01395 0.22 +1.1 289,329 - LU632_RS01395 0.22 +0.7 289,332 + LU632_RS01395 0.23 +0.2 289,332 + LU632_RS01395 0.23 +0.6 289,333 - LU632_RS01395 0.23 +2.6 289,415 - LU632_RS01395 0.45 +0.4 289,420 - LU632_RS01395 0.46 -0.0 289,489 - LU632_RS01395 0.64 -0.4 289,489 - LU632_RS01395 0.64 +0.8 289,495 - LU632_RS01395 0.66 -0.1 289,715 + LU632_RS01400 0.89 +1.6 289,936 - LU632_RS01405 0.15 -1.4 289,936 - LU632_RS01405 0.15 +0.5 289,983 + LU632_RS01405 0.20 +0.6 290,137 + LU632_RS01405 0.38 -0.5 290,138 - LU632_RS01405 0.38 +0.3 290,248 - LU632_RS01405 0.51 -0.7 290,462 + LU632_RS01405 0.75 -1.9 290,468 + LU632_RS01405 0.76 -0.0 290,468 + LU632_RS01405 0.76 -0.1 290,469 - LU632_RS01405 0.76 +0.8 290,473 - LU632_RS01405 0.76 -2.3 290,487 + LU632_RS01405 0.78 -1.6 290,593 + -0.7 290,594 - +1.1 290,629 - -1.0 290,713 + +0.5 290,714 - +1.5 290,936 + LU632_RS01410 0.17 -0.8 290,936 + LU632_RS01410 0.17 -0.9 290,998 + LU632_RS01410 0.21 -1.5 290,998 + LU632_RS01410 0.21 -1.9 290,999 - LU632_RS01410 0.21 -0.8 291,306 - LU632_RS01410 0.41 +1.8 291,441 + LU632_RS01410 0.50 -0.7 291,503 + LU632_RS01410 0.54 +0.6 291,503 + LU632_RS01410 0.54 -0.8 291,504 - LU632_RS01410 0.54 -1.0 291,504 - LU632_RS01410 0.54 -0.4
Or see this region's nucleotide sequence