Experiment: plant=Cucumber; plant sample=CP3; plant location=NA
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt crcB and LU632_RS01325 are separated by 76 nucleotides LU632_RS01325 and LU632_RS01330 are separated by 11 nucleotides LU632_RS01330 and LU632_RS01335 are separated by 6 nucleotides
LU632_RS01320: crcB - fluoride efflux transporter CrcB, at 273,679 to 274,059
crcB
LU632_RS01325: LU632_RS01325 - MFS transporter, at 274,136 to 274,643
_RS01325
LU632_RS01330: LU632_RS01330 - sugar porter family MFS transporter, at 274,655 to 274,951
_RS01330
LU632_RS01335: LU632_RS01335 - MFS transporter, at 274,958 to 275,260
_RS01335
Position (kb) 273
274
275 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 272.695 kb on + strand at 272.727 kb on + strand at 272.727 kb on + strand at 272.727 kb on + strand at 272.839 kb on - strand at 272.919 kb on + strand at 272.981 kb on - strand at 272.983 kb on + strand at 273.020 kb on + strand at 273.020 kb on + strand at 273.020 kb on + strand at 273.021 kb on - strand at 273.023 kb on - strand at 273.052 kb on - strand at 273.053 kb on + strand at 273.066 kb on + strand at 273.066 kb on + strand at 273.066 kb on + strand at 273.067 kb on - strand at 273.067 kb on - strand at 273.134 kb on - strand at 273.134 kb on - strand at 273.152 kb on - strand at 273.152 kb on - strand at 273.152 kb on - strand at 273.158 kb on - strand at 273.158 kb on - strand at 273.239 kb on - strand at 273.258 kb on + strand at 273.258 kb on + strand at 273.259 kb on - strand at 273.259 kb on - strand at 273.259 kb on - strand at 273.259 kb on - strand at 273.283 kb on - strand at 273.283 kb on - strand at 273.314 kb on - strand at 273.602 kb on + strand at 273.820 kb on - strand, within crcB at 273.897 kb on - strand, within crcB at 273.897 kb on - strand, within crcB at 273.906 kb on + strand, within crcB at 274.057 kb on + strand at 274.084 kb on - strand at 274.084 kb on - strand at 274.084 kb on - strand at 274.132 kb on + strand at 274.202 kb on + strand, within LU632_RS01325 at 274.492 kb on + strand, within LU632_RS01325 at 274.492 kb on + strand, within LU632_RS01325 at 274.530 kb on + strand, within LU632_RS01325 at 274.530 kb on + strand, within LU632_RS01325 at 274.530 kb on + strand, within LU632_RS01325 at 274.534 kb on - strand, within LU632_RS01325 at 274.534 kb on - strand, within LU632_RS01325 at 274.568 kb on + strand, within LU632_RS01325 at 274.625 kb on + strand at 274.648 kb on - strand at 274.671 kb on - strand at 274.671 kb on - strand at 274.728 kb on + strand, within LU632_RS01330 at 274.728 kb on + strand, within LU632_RS01330 at 274.729 kb on - strand, within LU632_RS01330 at 274.729 kb on - strand, within LU632_RS01330 at 274.741 kb on + strand, within LU632_RS01330 at 274.741 kb on + strand, within LU632_RS01330 at 274.744 kb on + strand, within LU632_RS01330 at 274.882 kb on + strand, within LU632_RS01330 at 274.882 kb on + strand, within LU632_RS01330 at 274.883 kb on - strand, within LU632_RS01330 at 274.883 kb on - strand, within LU632_RS01330 at 274.883 kb on - strand, within LU632_RS01330 at 274.883 kb on - strand, within LU632_RS01330 at 274.883 kb on - strand, within LU632_RS01330 at 274.969 kb on + strand at 274.983 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Cucumber; plant sample=CP3; plant location=NA remove 272,695 + -0.0 272,727 + +2.8 272,727 + +0.5 272,727 + -1.2 272,839 - +0.0 272,919 + +0.3 272,981 - +0.2 272,983 + +0.6 273,020 + -1.8 273,020 + -1.9 273,020 + +0.8 273,021 - +0.6 273,023 - +0.5 273,052 - -1.5 273,053 + +0.6 273,066 + -1.9 273,066 + +0.2 273,066 + -0.6 273,067 - +1.3 273,067 - +1.9 273,134 - +1.6 273,134 - +2.0 273,152 - +0.7 273,152 - -0.6 273,152 - +0.5 273,158 - +0.1 273,158 - +2.0 273,239 - -0.6 273,258 + -0.4 273,258 + -0.0 273,259 - +1.2 273,259 - -0.9 273,259 - -0.1 273,259 - +1.3 273,283 - -1.8 273,283 - +0.7 273,314 - -0.9 273,602 + -1.2 273,820 - crcB LU632_RS01320 0.37 -2.8 273,897 - crcB LU632_RS01320 0.57 -1.6 273,897 - crcB LU632_RS01320 0.57 -0.8 273,906 + crcB LU632_RS01320 0.60 -0.3 274,057 + -0.8 274,084 - -1.9 274,084 - -0.8 274,084 - -1.4 274,132 + -0.1 274,202 + LU632_RS01325 0.13 +0.1 274,492 + LU632_RS01325 0.70 +0.6 274,492 + LU632_RS01325 0.70 +0.3 274,530 + LU632_RS01325 0.78 +0.3 274,530 + LU632_RS01325 0.78 +0.7 274,530 + LU632_RS01325 0.78 -0.5 274,534 - LU632_RS01325 0.78 +2.0 274,534 - LU632_RS01325 0.78 +0.9 274,568 + LU632_RS01325 0.85 +0.6 274,625 + -0.0 274,648 - +0.5 274,671 - -1.7 274,671 - +0.6 274,728 + LU632_RS01330 0.25 -2.0 274,728 + LU632_RS01330 0.25 -0.0 274,729 - LU632_RS01330 0.25 -0.4 274,729 - LU632_RS01330 0.25 +0.0 274,741 + LU632_RS01330 0.29 -0.0 274,741 + LU632_RS01330 0.29 +2.0 274,744 + LU632_RS01330 0.30 -0.9 274,882 + LU632_RS01330 0.76 +0.8 274,882 + LU632_RS01330 0.76 -0.3 274,883 - LU632_RS01330 0.77 +0.2 274,883 - LU632_RS01330 0.77 +0.3 274,883 - LU632_RS01330 0.77 -0.6 274,883 - LU632_RS01330 0.77 +0.1 274,883 - LU632_RS01330 0.77 +0.9 274,969 + +0.1 274,983 - +1.9
Or see this region's nucleotide sequence