Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS00820

Experiment: plant=Cucumber; plant sample=CP3; plant location=NA

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS00810 and LU632_RS00815 overlap by 11 nucleotidesLU632_RS00815 and LU632_RS00820 are separated by 9 nucleotidesLU632_RS00820 and LU632_RS00825 are separated by 210 nucleotides LU632_RS00810: LU632_RS00810 - carbohydrate ABC transporter permease, at 176,523 to 177,362 _RS00810 LU632_RS00815: LU632_RS00815 - sugar ABC transporter permease, at 177,352 to 178,260 _RS00815 LU632_RS00820: LU632_RS00820 - extracellular solute-binding protein, at 178,270 to 179,520 _RS00820 LU632_RS00825: LU632_RS00825 - ROK family protein, at 179,731 to 180,672 _RS00825 Position (kb) 178 179 180Strain fitness (log2 ratio) -2 -1 0 1 2 3at 177.353 kb on + strandat 177.363 kb on - strandat 177.404 kb on + strandat 177.404 kb on + strandat 177.404 kb on + strandat 177.405 kb on - strandat 177.405 kb on - strandat 177.412 kb on + strandat 177.449 kb on + strand, within LU632_RS00815at 177.495 kb on - strand, within LU632_RS00815at 177.551 kb on + strand, within LU632_RS00815at 177.551 kb on + strand, within LU632_RS00815at 177.551 kb on + strand, within LU632_RS00815at 177.551 kb on + strand, within LU632_RS00815at 177.552 kb on - strand, within LU632_RS00815at 177.552 kb on - strand, within LU632_RS00815at 177.728 kb on - strand, within LU632_RS00815at 177.957 kb on - strand, within LU632_RS00815at 178.032 kb on - strand, within LU632_RS00815at 178.080 kb on - strand, within LU632_RS00815at 178.086 kb on - strand, within LU632_RS00815at 178.086 kb on - strand, within LU632_RS00815at 178.104 kb on - strand, within LU632_RS00815at 178.122 kb on + strand, within LU632_RS00815at 178.122 kb on + strand, within LU632_RS00815at 178.123 kb on - strand, within LU632_RS00815at 178.126 kb on + strand, within LU632_RS00815at 178.127 kb on - strand, within LU632_RS00815at 178.127 kb on - strand, within LU632_RS00815at 178.198 kb on + strandat 178.271 kb on + strandat 178.271 kb on + strandat 178.271 kb on + strandat 178.271 kb on + strandat 178.271 kb on + strandat 178.271 kb on + strandat 178.271 kb on + strandat 178.272 kb on - strandat 178.365 kb on + strandat 178.365 kb on + strandat 178.478 kb on + strand, within LU632_RS00820at 178.478 kb on + strand, within LU632_RS00820at 178.514 kb on + strand, within LU632_RS00820at 178.515 kb on - strand, within LU632_RS00820at 178.551 kb on + strand, within LU632_RS00820at 178.551 kb on + strand, within LU632_RS00820at 178.551 kb on + strand, within LU632_RS00820at 178.552 kb on - strand, within LU632_RS00820at 178.553 kb on + strand, within LU632_RS00820at 178.554 kb on - strand, within LU632_RS00820at 178.680 kb on + strand, within LU632_RS00820at 178.709 kb on + strand, within LU632_RS00820at 178.710 kb on - strand, within LU632_RS00820at 178.710 kb on - strand, within LU632_RS00820at 178.710 kb on - strand, within LU632_RS00820at 178.713 kb on + strand, within LU632_RS00820at 178.713 kb on + strand, within LU632_RS00820at 178.714 kb on - strand, within LU632_RS00820at 178.715 kb on + strand, within LU632_RS00820at 178.715 kb on + strand, within LU632_RS00820at 178.716 kb on - strand, within LU632_RS00820at 178.716 kb on - strand, within LU632_RS00820at 178.716 kb on - strand, within LU632_RS00820at 178.716 kb on - strand, within LU632_RS00820at 178.716 kb on - strand, within LU632_RS00820at 178.716 kb on - strand, within LU632_RS00820at 178.716 kb on - strand, within LU632_RS00820at 178.781 kb on + strand, within LU632_RS00820at 178.782 kb on - strand, within LU632_RS00820at 178.922 kb on + strand, within LU632_RS00820at 178.923 kb on - strand, within LU632_RS00820at 179.075 kb on + strand, within LU632_RS00820at 179.076 kb on - strand, within LU632_RS00820at 179.076 kb on - strand, within LU632_RS00820at 179.085 kb on - strand, within LU632_RS00820at 179.089 kb on - strand, within LU632_RS00820at 179.239 kb on - strand, within LU632_RS00820at 179.446 kb on + strandat 179.447 kb on - strandat 179.482 kb on + strandat 179.486 kb on + strandat 179.487 kb on - strandat 179.536 kb on + strandat 179.635 kb on - strandat 179.639 kb on - strandat 179.640 kb on + strandat 179.641 kb on - strandat 179.664 kb on + strandat 179.665 kb on - strandat 179.665 kb on - strandat 179.665 kb on - strandat 179.718 kb on + strandat 179.718 kb on + strandat 179.719 kb on - strandat 179.719 kb on - strandat 179.719 kb on - strandat 179.722 kb on + strandat 179.911 kb on + strand, within LU632_RS00825at 179.911 kb on + strand, within LU632_RS00825at 179.911 kb on + strand, within LU632_RS00825at 179.911 kb on + strand, within LU632_RS00825at 179.911 kb on + strand, within LU632_RS00825at 179.921 kb on - strand, within LU632_RS00825at 179.934 kb on - strand, within LU632_RS00825at 179.934 kb on - strand, within LU632_RS00825at 179.949 kb on + strand, within LU632_RS00825at 179.950 kb on - strand, within LU632_RS00825at 179.989 kb on + strand, within LU632_RS00825at 180.310 kb on + strand, within LU632_RS00825at 180.310 kb on + strand, within LU632_RS00825at 180.311 kb on - strand, within LU632_RS00825

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Per-strain Table

Position Strand Gene LocusTag Fraction plant=Cucumber; plant sample=CP3; plant location=NA
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177,353 + -1.1
177,363 - -1.1
177,404 + -1.0
177,404 + +0.3
177,404 + -1.5
177,405 - +0.6
177,405 - -0.2
177,412 + +0.5
177,449 + LU632_RS00815 0.11 -0.1
177,495 - LU632_RS00815 0.16 -0.4
177,551 + LU632_RS00815 0.22 -0.3
177,551 + LU632_RS00815 0.22 -0.9
177,551 + LU632_RS00815 0.22 -0.9
177,551 + LU632_RS00815 0.22 -1.7
177,552 - LU632_RS00815 0.22 +0.1
177,552 - LU632_RS00815 0.22 -0.4
177,728 - LU632_RS00815 0.41 -2.3
177,957 - LU632_RS00815 0.67 -1.6
178,032 - LU632_RS00815 0.75 +0.6
178,080 - LU632_RS00815 0.80 +1.6
178,086 - LU632_RS00815 0.81 +0.0
178,086 - LU632_RS00815 0.81 +0.3
178,104 - LU632_RS00815 0.83 +0.7
178,122 + LU632_RS00815 0.85 -1.2
178,122 + LU632_RS00815 0.85 -0.0
178,123 - LU632_RS00815 0.85 +0.1
178,126 + LU632_RS00815 0.85 -0.0
178,127 - LU632_RS00815 0.85 +1.2
178,127 - LU632_RS00815 0.85 +1.2
178,198 + +0.7
178,271 + +0.3
178,271 + +0.6
178,271 + -1.0
178,271 + +3.6
178,271 + -0.2
178,271 + -0.0
178,271 + +0.6
178,272 - +2.1
178,365 + -2.0
178,365 + -0.7
178,478 + LU632_RS00820 0.17 -1.9
178,478 + LU632_RS00820 0.17 +0.7
178,514 + LU632_RS00820 0.20 +0.6
178,515 - LU632_RS00820 0.20 -1.0
178,551 + LU632_RS00820 0.22 +1.0
178,551 + LU632_RS00820 0.22 -0.7
178,551 + LU632_RS00820 0.22 +0.4
178,552 - LU632_RS00820 0.23 -1.7
178,553 + LU632_RS00820 0.23 -1.6
178,554 - LU632_RS00820 0.23 -0.1
178,680 + LU632_RS00820 0.33 -1.4
178,709 + LU632_RS00820 0.35 +0.9
178,710 - LU632_RS00820 0.35 +1.0
178,710 - LU632_RS00820 0.35 +1.6
178,710 - LU632_RS00820 0.35 -0.4
178,713 + LU632_RS00820 0.35 +1.0
178,713 + LU632_RS00820 0.35 -0.5
178,714 - LU632_RS00820 0.35 -1.2
178,715 + LU632_RS00820 0.36 +1.3
178,715 + LU632_RS00820 0.36 +3.5
178,716 - LU632_RS00820 0.36 +0.2
178,716 - LU632_RS00820 0.36 -0.7
178,716 - LU632_RS00820 0.36 +1.5
178,716 - LU632_RS00820 0.36 -0.2
178,716 - LU632_RS00820 0.36 +0.9
178,716 - LU632_RS00820 0.36 -1.2
178,716 - LU632_RS00820 0.36 +2.2
178,781 + LU632_RS00820 0.41 -0.2
178,782 - LU632_RS00820 0.41 +1.2
178,922 + LU632_RS00820 0.52 +0.3
178,923 - LU632_RS00820 0.52 +0.9
179,075 + LU632_RS00820 0.64 +2.3
179,076 - LU632_RS00820 0.64 +0.3
179,076 - LU632_RS00820 0.64 +1.4
179,085 - LU632_RS00820 0.65 +0.8
179,089 - LU632_RS00820 0.65 +0.7
179,239 - LU632_RS00820 0.77 -0.6
179,446 + -1.7
179,447 - -0.6
179,482 + +0.3
179,486 + -0.6
179,487 - -1.0
179,536 + -1.4
179,635 - +0.7
179,639 - -0.9
179,640 + -1.0
179,641 - +0.4
179,664 + -0.9
179,665 - +0.9
179,665 - -0.4
179,665 - -1.6
179,718 + -0.7
179,718 + +0.3
179,719 - -0.7
179,719 - -0.2
179,719 - -1.1
179,722 + +1.3
179,911 + LU632_RS00825 0.19 +0.3
179,911 + LU632_RS00825 0.19 +0.3
179,911 + LU632_RS00825 0.19 -1.8
179,911 + LU632_RS00825 0.19 -2.3
179,911 + LU632_RS00825 0.19 +0.8
179,921 - LU632_RS00825 0.20 -1.1
179,934 - LU632_RS00825 0.22 -0.2
179,934 - LU632_RS00825 0.22 -1.1
179,949 + LU632_RS00825 0.23 +0.1
179,950 - LU632_RS00825 0.23 -0.1
179,989 + LU632_RS00825 0.27 +0.5
180,310 + LU632_RS00825 0.61 -1.4
180,310 + LU632_RS00825 0.61 -1.6
180,311 - LU632_RS00825 0.62 +2.4

Or see this region's nucleotide sequence