Experiment: plant=Cucumber; plant sample=CP3; plant location=NA
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS00650 and LU632_RS00655 overlap by 1 nucleotides LU632_RS00655 and LU632_RS00660 overlap by 7 nucleotides LU632_RS00660 and LU632_RS00665 are separated by 22 nucleotides
LU632_RS00650: LU632_RS00650 - OmpA family protein, at 133,474 to 134,958
_RS00650
LU632_RS00655: LU632_RS00655 - DotU family type IV/VI secretion system protein, at 134,958 to 135,569
_RS00655
LU632_RS00660: LU632_RS00660 - UDP-N-acetylglucosamine-transferase, at 135,563 to 136,903
_RS00660
LU632_RS00665: LU632_RS00665 - fimbrial protein, at 136,926 to 137,927
_RS00665
Position (kb) 135
136
137 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 134.581 kb on + strand, within LU632_RS00650 at 134.591 kb on + strand, within LU632_RS00650 at 134.591 kb on + strand, within LU632_RS00650 at 134.592 kb on - strand, within LU632_RS00650 at 134.592 kb on - strand, within LU632_RS00650 at 134.593 kb on + strand, within LU632_RS00650 at 134.593 kb on + strand, within LU632_RS00650 at 134.596 kb on - strand, within LU632_RS00650 at 134.682 kb on + strand, within LU632_RS00650 at 135.390 kb on - strand, within LU632_RS00655 at 135.530 kb on + strand at 136.083 kb on - strand, within LU632_RS00660 at 136.194 kb on - strand, within LU632_RS00660 at 136.196 kb on - strand, within LU632_RS00660 at 136.196 kb on - strand, within LU632_RS00660 at 136.646 kb on - strand, within LU632_RS00660 at 136.778 kb on - strand at 136.790 kb on - strand at 137.073 kb on - strand, within LU632_RS00665 at 137.109 kb on - strand, within LU632_RS00665 at 137.219 kb on - strand, within LU632_RS00665 at 137.243 kb on + strand, within LU632_RS00665 at 137.376 kb on + strand, within LU632_RS00665 at 137.417 kb on - strand, within LU632_RS00665 at 137.435 kb on + strand, within LU632_RS00665 at 137.439 kb on + strand, within LU632_RS00665 at 137.439 kb on + strand, within LU632_RS00665 at 137.439 kb on + strand, within LU632_RS00665 at 137.440 kb on - strand, within LU632_RS00665 at 137.651 kb on - strand, within LU632_RS00665 at 137.651 kb on - strand, within LU632_RS00665 at 137.652 kb on + strand, within LU632_RS00665 at 137.772 kb on - strand, within LU632_RS00665 at 137.805 kb on - strand, within LU632_RS00665 at 137.840 kb on + strand at 137.840 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Cucumber; plant sample=CP3; plant location=NA remove 134,581 + LU632_RS00650 0.75 -2.2 134,591 + LU632_RS00650 0.75 -0.4 134,591 + LU632_RS00650 0.75 +2.8 134,592 - LU632_RS00650 0.75 +1.1 134,592 - LU632_RS00650 0.75 +0.1 134,593 + LU632_RS00650 0.75 +0.6 134,593 + LU632_RS00650 0.75 +3.4 134,596 - LU632_RS00650 0.76 +0.3 134,682 + LU632_RS00650 0.81 -1.1 135,390 - LU632_RS00655 0.71 +0.4 135,530 + +0.2 136,083 - LU632_RS00660 0.39 +1.4 136,194 - LU632_RS00660 0.47 +3.2 136,196 - LU632_RS00660 0.47 -1.0 136,196 - LU632_RS00660 0.47 +0.1 136,646 - LU632_RS00660 0.81 -0.9 136,778 - +1.3 136,790 - +2.6 137,073 - LU632_RS00665 0.15 -0.0 137,109 - LU632_RS00665 0.18 +1.0 137,219 - LU632_RS00665 0.29 +1.0 137,243 + LU632_RS00665 0.32 +0.5 137,376 + LU632_RS00665 0.45 +0.3 137,417 - LU632_RS00665 0.49 +1.0 137,435 + LU632_RS00665 0.51 -3.3 137,439 + LU632_RS00665 0.51 +0.1 137,439 + LU632_RS00665 0.51 -2.3 137,439 + LU632_RS00665 0.51 +0.9 137,440 - LU632_RS00665 0.51 -0.7 137,651 - LU632_RS00665 0.72 -0.4 137,651 - LU632_RS00665 0.72 +0.4 137,652 + LU632_RS00665 0.72 -0.4 137,772 - LU632_RS00665 0.84 +0.1 137,805 - LU632_RS00665 0.88 -1.9 137,840 + -0.9 137,840 + -1.0
Or see this region's nucleotide sequence