Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS00630

Experiment: plant=Cucumber; plant sample=CP3; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Cucumber; plant sample=CP3; plant location=NA
128,752	-		LU632_RS00625	0.65	+3.7
128,752	-		LU632_RS00625	0.65	-0.1
128,754	-		LU632_RS00625	0.65	-0.7
128,754	-		LU632_RS00625	0.65	-0.1
128,809	+		LU632_RS00625	0.68	+0.8
128,925	+		LU632_RS00625	0.75	+0.1
128,926	-		LU632_RS00625	0.75	+0.1
128,977	+		LU632_RS00625	0.79	+0.4
128,977	+		LU632_RS00625	0.79	-1.4
128,978	-		LU632_RS00625	0.79	+2.0
128,989	+		LU632_RS00625	0.79	+1.6
128,990	-		LU632_RS00625	0.79	-0.4
128,992	+		LU632_RS00625	0.80	+2.5
128,993	-		LU632_RS00625	0.80	-0.6
128,993	-		LU632_RS00625	0.80	-0.3
128,993	-		LU632_RS00625	0.80	-0.3
128,998	+		LU632_RS00625	0.80	-0.1
128,998	+		LU632_RS00625	0.80	-0.4
128,998	+		LU632_RS00625	0.80	-0.4
128,998	+		LU632_RS00625	0.80	-1.5
128,998	+		LU632_RS00625	0.80	-0.7
128,999	-		LU632_RS00625	0.80	+0.5
128,999	-		LU632_RS00625	0.80	+1.4
128,999	-		LU632_RS00625	0.80	-1.6
128,999	-		LU632_RS00625	0.80	-2.0
129,006	-		LU632_RS00625	0.80	-1.5
129,008	+		LU632_RS00625	0.80	-1.1
129,028	+		LU632_RS00625	0.82	-2.2
129,032	+		LU632_RS00625	0.82	-1.0
129,033	-		LU632_RS00625	0.82	-0.0
129,033	-		LU632_RS00625	0.82	-0.2
129,036	+		LU632_RS00625	0.82	-0.3
129,036	+		LU632_RS00625	0.82	-0.4
129,121	+		LU632_RS00625	0.88	-1.4
129,214	+				-1.6
129,290	-				-0.6
129,309	-				-0.1
129,320	+				+0.4
129,336	+				-0.1
129,345	+				-0.1
129,346	-				-0.4
129,360	-				+1.3
129,383	-				-1.2
129,383	-				+1.2
129,604	+				-1.7
129,604	+				-0.3
129,605	-				+0.5
129,605	-				-0.8
129,617	+				-1.2
129,617	+				-0.9
129,617	+				-0.3
129,618	-				+0.5
129,618	-				-1.0
129,618	-				-1.1
129,619	+				+0.1
129,619	+				+1.1
129,619	+				-0.9
129,619	+				-1.0
129,620	-				+0.2
129,621	+				+1.8
129,621	+				+1.4
129,621	+				+1.2
129,621	+				-1.6
129,621	+				+1.8
129,806	-	adhP	LU632_RS00630	0.16	-0.0
129,807	+	adhP	LU632_RS00630	0.16	+0.4
129,948	+	adhP	LU632_RS00630	0.30	-2.9
130,006	+	adhP	LU632_RS00630	0.36	-0.6
130,007	-	adhP	LU632_RS00630	0.36	+0.1
130,095	-	adhP	LU632_RS00630	0.44	-0.1
130,146	-	adhP	LU632_RS00630	0.50	+1.1
130,146	-	adhP	LU632_RS00630	0.50	+0.9
130,165	+	adhP	LU632_RS00630	0.51	-0.4
130,181	+	adhP	LU632_RS00630	0.53	-0.1
130,225	+	adhP	LU632_RS00630	0.57	+0.1
130,226	-	adhP	LU632_RS00630	0.57	-1.0
130,226	-	adhP	LU632_RS00630	0.57	-0.6
130,275	+	adhP	LU632_RS00630	0.62	+0.1
130,370	-	adhP	LU632_RS00630	0.72	+1.3
130,585	+				+0.3
130,586	-				-0.1
130,588	+				-0.4
130,656	-				-0.6
130,730	-				+1.9
130,855	+				+0.8
130,867	-				+0.8
130,943	+				-0.6
131,001	-				+0.6
131,022	+				-1.0
131,137	-		LU632_RS00635	0.32	-0.8
131,156	+		LU632_RS00635	0.43	+0.1
131,204	+		LU632_RS00635	0.69	+3.2
131,303	+				+1.2
131,304	-				-0.2
131,308	+				-0.6
131,309	-				-0.7
131,309	-				+2.0
131,331	-				-0.5
131,365	+				+0.4
131,365	+				+2.0
131,366	-				+0.2
131,366	-				-2.2
131,369	-				+1.3
131,396	+				-0.5
131,427	-				-0.5
131,437	-				-0.9