Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS00255

Experiment: plant=Cucumber; plant sample=CP3; plant location=NA

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntcirA and LU632_RS00255 are separated by 47 nucleotidesLU632_RS00255 and LU632_RS00260 are separated by 581 nucleotides LU632_RS00250: cirA - catecholate siderophore receptor CirA, at 48,008 to 49,969 cirA LU632_RS00255: LU632_RS00255 - ABC transporter substrate-binding protein, at 50,017 to 51,168 _RS00255 LU632_RS00260: LU632_RS00260 - SMR family transporter, at 51,750 to 52,089 _RS00260 Position (kb) 50 51 52Strain fitness (log2 ratio) -2 -1 0 1 2at 49.087 kb on + strand, within cirAat 49.087 kb on + strand, within cirAat 49.087 kb on + strand, within cirAat 49.087 kb on + strand, within cirAat 49.126 kb on - strand, within cirAat 49.154 kb on + strand, within cirAat 49.355 kb on + strand, within cirAat 49.484 kb on - strand, within cirAat 49.544 kb on + strand, within cirAat 49.552 kb on + strand, within cirAat 49.654 kb on + strand, within cirAat 49.951 kb on + strandat 49.988 kb on - strandat 50.019 kb on - strandat 50.065 kb on - strandat 50.067 kb on - strandat 50.067 kb on - strandat 50.154 kb on + strand, within LU632_RS00255at 50.154 kb on + strand, within LU632_RS00255at 50.154 kb on + strand, within LU632_RS00255at 50.155 kb on - strand, within LU632_RS00255at 50.155 kb on - strand, within LU632_RS00255at 50.171 kb on + strand, within LU632_RS00255at 50.172 kb on - strand, within LU632_RS00255at 50.175 kb on + strand, within LU632_RS00255at 50.605 kb on - strand, within LU632_RS00255at 50.607 kb on - strand, within LU632_RS00255at 50.607 kb on - strand, within LU632_RS00255at 50.686 kb on - strand, within LU632_RS00255at 50.771 kb on - strand, within LU632_RS00255at 50.771 kb on - strand, within LU632_RS00255at 50.864 kb on - strand, within LU632_RS00255at 50.981 kb on + strand, within LU632_RS00255at 51.009 kb on + strand, within LU632_RS00255at 51.019 kb on - strand, within LU632_RS00255at 51.085 kb on + strandat 51.086 kb on - strandat 51.098 kb on - strandat 51.213 kb on - strandat 51.258 kb on + strandat 51.259 kb on - strandat 51.345 kb on - strandat 51.348 kb on + strandat 51.355 kb on + strandat 51.398 kb on + strandat 51.399 kb on - strandat 51.416 kb on - strandat 51.459 kb on + strandat 51.595 kb on + strandat 51.653 kb on + strandat 51.687 kb on + strandat 51.702 kb on - strandat 51.762 kb on + strandat 51.762 kb on + strandat 51.762 kb on + strandat 51.762 kb on + strandat 51.815 kb on - strand, within LU632_RS00260at 51.864 kb on + strand, within LU632_RS00260at 51.869 kb on + strand, within LU632_RS00260at 51.869 kb on + strand, within LU632_RS00260at 51.870 kb on - strand, within LU632_RS00260at 51.870 kb on - strand, within LU632_RS00260at 51.871 kb on + strand, within LU632_RS00260at 51.871 kb on + strand, within LU632_RS00260at 51.872 kb on - strand, within LU632_RS00260at 51.872 kb on - strand, within LU632_RS00260at 51.929 kb on + strand, within LU632_RS00260at 51.934 kb on + strand, within LU632_RS00260at 51.935 kb on - strand, within LU632_RS00260at 51.935 kb on - strand, within LU632_RS00260at 51.935 kb on - strand, within LU632_RS00260at 52.056 kb on + strandat 52.063 kb on - strandat 52.162 kb on - strandat 52.162 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction plant=Cucumber; plant sample=CP3; plant location=NA
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49,087 + cirA LU632_RS00250 0.55 -0.2
49,087 + cirA LU632_RS00250 0.55 +1.2
49,087 + cirA LU632_RS00250 0.55 -0.2
49,087 + cirA LU632_RS00250 0.55 +0.2
49,126 - cirA LU632_RS00250 0.57 +0.8
49,154 + cirA LU632_RS00250 0.58 -0.7
49,355 + cirA LU632_RS00250 0.69 -0.3
49,484 - cirA LU632_RS00250 0.75 -1.2
49,544 + cirA LU632_RS00250 0.78 +0.1
49,552 + cirA LU632_RS00250 0.79 +0.2
49,654 + cirA LU632_RS00250 0.84 -1.7
49,951 + -0.5
49,988 - -0.7
50,019 - +1.0
50,065 - +2.2
50,067 - -0.1
50,067 - -1.6
50,154 + LU632_RS00255 0.12 +1.5
50,154 + LU632_RS00255 0.12 +0.1
50,154 + LU632_RS00255 0.12 -1.0
50,155 - LU632_RS00255 0.12 +1.7
50,155 - LU632_RS00255 0.12 +0.7
50,171 + LU632_RS00255 0.13 +0.1
50,172 - LU632_RS00255 0.13 +0.5
50,175 + LU632_RS00255 0.14 +0.1
50,605 - LU632_RS00255 0.51 -1.0
50,607 - LU632_RS00255 0.51 -0.0
50,607 - LU632_RS00255 0.51 -0.2
50,686 - LU632_RS00255 0.58 +0.6
50,771 - LU632_RS00255 0.65 +0.2
50,771 - LU632_RS00255 0.65 +2.4
50,864 - LU632_RS00255 0.74 -0.4
50,981 + LU632_RS00255 0.84 +0.0
51,009 + LU632_RS00255 0.86 +0.0
51,019 - LU632_RS00255 0.87 +1.6
51,085 + -1.3
51,086 - -0.9
51,098 - -0.8
51,213 - -0.0
51,258 + +1.3
51,259 - -0.9
51,345 - -1.2
51,348 + +1.0
51,355 + +0.1
51,398 + -0.2
51,399 - +0.7
51,416 - +0.7
51,459 + +0.2
51,595 + +0.2
51,653 + -0.7
51,687 + +2.6
51,702 - +1.0
51,762 + -0.4
51,762 + +0.3
51,762 + +1.9
51,762 + -0.1
51,815 - LU632_RS00260 0.19 +0.7
51,864 + LU632_RS00260 0.34 -1.0
51,869 + LU632_RS00260 0.35 +1.6
51,869 + LU632_RS00260 0.35 +0.8
51,870 - LU632_RS00260 0.35 +0.8
51,870 - LU632_RS00260 0.35 +0.6
51,871 + LU632_RS00260 0.36 +1.8
51,871 + LU632_RS00260 0.36 +0.9
51,872 - LU632_RS00260 0.36 +0.0
51,872 - LU632_RS00260 0.36 -1.0
51,929 + LU632_RS00260 0.53 -0.6
51,934 + LU632_RS00260 0.54 -2.5
51,935 - LU632_RS00260 0.54 +0.2
51,935 - LU632_RS00260 0.54 +1.5
51,935 - LU632_RS00260 0.54 +0.3
52,056 + -1.7
52,063 - -0.6
52,162 - +0.8
52,162 - -1.7

Or see this region's nucleotide sequence