Experiment: R2A with 6-Pentyl-2H-pyran-2-one 0.3133 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS21265 and ABIE41_RS21270 are separated by 42 nucleotides ABIE41_RS21270 and ABIE41_RS21275 are separated by 25 nucleotides ABIE41_RS21275 and ABIE41_RS21280 are separated by 50 nucleotides ABIE41_RS21280 and ABIE41_RS21285 are separated by 9 nucleotides
ABIE41_RS21265: ABIE41_RS21265 - SMP-30/gluconolactonase/LRE family protein, at 4,369,097 to 4,370,338
_RS21265
ABIE41_RS21270: ABIE41_RS21270 - SRPBCC domain-containing protein, at 4,370,381 to 4,370,821
_RS21270
ABIE41_RS21275: ABIE41_RS21275 - metalloregulator ArsR/SmtB family transcription factor, at 4,370,847 to 4,371,200
_RS21275
ABIE41_RS21280: ABIE41_RS21280 - PaaI family thioesterase, at 4,371,251 to 4,371,706
_RS21280
ABIE41_RS21285: ABIE41_RS21285 - tRNA dihydrouridine(20/20a) synthase DusA, at 4,371,716 to 4,372,717
_RS21285
Position (kb) 4370
4371 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4369.439 kb on + strand, within ABIE41_RS21265 at 4369.439 kb on + strand, within ABIE41_RS21265 at 4369.605 kb on - strand, within ABIE41_RS21265 at 4369.700 kb on + strand, within ABIE41_RS21265 at 4369.700 kb on + strand, within ABIE41_RS21265 at 4369.700 kb on + strand, within ABIE41_RS21265 at 4369.701 kb on - strand, within ABIE41_RS21265 at 4369.736 kb on + strand, within ABIE41_RS21265 at 4369.853 kb on + strand, within ABIE41_RS21265 at 4369.853 kb on + strand, within ABIE41_RS21265 at 4369.854 kb on - strand, within ABIE41_RS21265 at 4369.952 kb on + strand, within ABIE41_RS21265 at 4369.952 kb on + strand, within ABIE41_RS21265 at 4369.952 kb on + strand, within ABIE41_RS21265 at 4369.953 kb on - strand, within ABIE41_RS21265 at 4370.107 kb on - strand, within ABIE41_RS21265 at 4370.166 kb on - strand, within ABIE41_RS21265 at 4370.297 kb on + strand at 4370.297 kb on + strand at 4370.298 kb on - strand at 4370.306 kb on + strand at 4370.306 kb on + strand at 4370.306 kb on + strand at 4370.306 kb on + strand at 4370.306 kb on + strand at 4370.306 kb on + strand at 4370.306 kb on + strand at 4370.307 kb on - strand at 4370.307 kb on - strand at 4370.365 kb on - strand at 4370.592 kb on + strand, within ABIE41_RS21270 at 4370.593 kb on - strand, within ABIE41_RS21270 at 4370.593 kb on - strand, within ABIE41_RS21270 at 4370.593 kb on - strand, within ABIE41_RS21270 at 4370.595 kb on + strand, within ABIE41_RS21270 at 4370.595 kb on + strand, within ABIE41_RS21270 at 4370.595 kb on + strand, within ABIE41_RS21270 at 4370.595 kb on + strand, within ABIE41_RS21270 at 4370.595 kb on + strand, within ABIE41_RS21270 at 4370.595 kb on + strand, within ABIE41_RS21270 at 4370.595 kb on + strand, within ABIE41_RS21270 at 4370.596 kb on - strand, within ABIE41_RS21270 at 4370.596 kb on - strand, within ABIE41_RS21270 at 4370.596 kb on - strand, within ABIE41_RS21270 at 4370.596 kb on - strand, within ABIE41_RS21270 at 4370.596 kb on - strand, within ABIE41_RS21270 at 4370.596 kb on - strand, within ABIE41_RS21270 at 4370.929 kb on + strand, within ABIE41_RS21275 at 4371.194 kb on + strand at 4371.227 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 6-Pentyl-2H-pyran-2-one 0.3133 mM remove 4,369,439 + ABIE41_RS21265 0.28 +0.9 4,369,439 + ABIE41_RS21265 0.28 +0.5 4,369,605 - ABIE41_RS21265 0.41 +2.4 4,369,700 + ABIE41_RS21265 0.49 -2.5 4,369,700 + ABIE41_RS21265 0.49 +0.0 4,369,700 + ABIE41_RS21265 0.49 -0.0 4,369,701 - ABIE41_RS21265 0.49 -0.7 4,369,736 + ABIE41_RS21265 0.51 -0.3 4,369,853 + ABIE41_RS21265 0.61 +0.8 4,369,853 + ABIE41_RS21265 0.61 +0.2 4,369,854 - ABIE41_RS21265 0.61 -0.2 4,369,952 + ABIE41_RS21265 0.69 +0.2 4,369,952 + ABIE41_RS21265 0.69 +0.5 4,369,952 + ABIE41_RS21265 0.69 -0.2 4,369,953 - ABIE41_RS21265 0.69 +0.4 4,370,107 - ABIE41_RS21265 0.81 -0.1 4,370,166 - ABIE41_RS21265 0.86 +0.2 4,370,297 + -0.0 4,370,297 + -0.4 4,370,298 - -1.0 4,370,306 + -0.0 4,370,306 + -0.3 4,370,306 + -0.3 4,370,306 + +1.6 4,370,306 + -0.2 4,370,306 + -0.4 4,370,306 + -0.1 4,370,307 - -1.3 4,370,307 - +0.8 4,370,365 - +0.5 4,370,592 + ABIE41_RS21270 0.48 -0.2 4,370,593 - ABIE41_RS21270 0.48 -1.8 4,370,593 - ABIE41_RS21270 0.48 -0.4 4,370,593 - ABIE41_RS21270 0.48 +0.1 4,370,595 + ABIE41_RS21270 0.49 +0.3 4,370,595 + ABIE41_RS21270 0.49 +0.8 4,370,595 + ABIE41_RS21270 0.49 -0.5 4,370,595 + ABIE41_RS21270 0.49 +0.5 4,370,595 + ABIE41_RS21270 0.49 -0.1 4,370,595 + ABIE41_RS21270 0.49 -0.1 4,370,595 + ABIE41_RS21270 0.49 +0.4 4,370,596 - ABIE41_RS21270 0.49 -0.3 4,370,596 - ABIE41_RS21270 0.49 +1.2 4,370,596 - ABIE41_RS21270 0.49 +0.3 4,370,596 - ABIE41_RS21270 0.49 +0.2 4,370,596 - ABIE41_RS21270 0.49 -0.0 4,370,596 - ABIE41_RS21270 0.49 +0.8 4,370,929 + ABIE41_RS21275 0.23 -0.5 4,371,194 + -2.7 4,371,227 + -0.5
Or see this region's nucleotide sequence