Strain Fitness in Bosea sp. OAE506 around ABIE41_RS11015

Experiment: R2A with 6-Pentyl-2H-pyran-2-one 0.3133 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS11005 and ABIE41_RS11010 are separated by 16 nucleotidesABIE41_RS11010 and ABIE41_RS11015 are separated by 265 nucleotidesABIE41_RS11015 and ABIE41_RS11020 are separated by 97 nucleotides ABIE41_RS11005: ABIE41_RS11005 - 3'(2'),5'-bisphosphate nucleotidase CysQ, at 2,259,919 to 2,260,752 _RS11005 ABIE41_RS11010: ABIE41_RS11010 - YHS domain-containing (seleno)protein, at 2,260,769 to 2,261,332 _RS11010 ABIE41_RS11015: ABIE41_RS11015 - DUF1134 domain-containing protein, at 2,261,598 to 2,262,206 _RS11015 ABIE41_RS11020: ABIE41_RS11020 - hypothetical protein, at 2,262,304 to 2,263,557 _RS11020 Position (kb) 2261 2262 2263Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2260.953 kb on + strand, within ABIE41_RS11010at 2260.953 kb on + strand, within ABIE41_RS11010at 2260.954 kb on - strand, within ABIE41_RS11010at 2260.974 kb on + strand, within ABIE41_RS11010at 2260.974 kb on + strand, within ABIE41_RS11010at 2260.974 kb on + strand, within ABIE41_RS11010at 2260.975 kb on - strand, within ABIE41_RS11010at 2260.975 kb on - strand, within ABIE41_RS11010at 2260.975 kb on - strand, within ABIE41_RS11010at 2261.055 kb on + strand, within ABIE41_RS11010at 2261.109 kb on + strand, within ABIE41_RS11010at 2261.385 kb on + strandat 2261.698 kb on + strand, within ABIE41_RS11015at 2261.841 kb on + strand, within ABIE41_RS11015at 2261.841 kb on + strand, within ABIE41_RS11015at 2261.841 kb on + strand, within ABIE41_RS11015at 2261.841 kb on + strand, within ABIE41_RS11015at 2261.842 kb on - strand, within ABIE41_RS11015at 2261.842 kb on - strand, within ABIE41_RS11015at 2261.842 kb on - strand, within ABIE41_RS11015at 2262.003 kb on + strand, within ABIE41_RS11015at 2262.030 kb on + strand, within ABIE41_RS11015at 2262.031 kb on - strand, within ABIE41_RS11015at 2262.031 kb on - strand, within ABIE41_RS11015at 2262.063 kb on + strand, within ABIE41_RS11015at 2262.269 kb on + strandat 2262.269 kb on + strandat 2262.913 kb on + strand, within ABIE41_RS11020at 2262.913 kb on + strand, within ABIE41_RS11020at 2262.914 kb on - strand, within ABIE41_RS11020at 2262.914 kb on - strand, within ABIE41_RS11020at 2262.914 kb on - strand, within ABIE41_RS11020at 2262.914 kb on - strand, within ABIE41_RS11020

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 6-Pentyl-2H-pyran-2-one 0.3133 mM
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2,260,953 + ABIE41_RS11010 0.33 +0.3
2,260,953 + ABIE41_RS11010 0.33 -1.5
2,260,954 - ABIE41_RS11010 0.33 +0.2
2,260,974 + ABIE41_RS11010 0.36 -0.3
2,260,974 + ABIE41_RS11010 0.36 -0.4
2,260,974 + ABIE41_RS11010 0.36 +1.4
2,260,975 - ABIE41_RS11010 0.37 -0.4
2,260,975 - ABIE41_RS11010 0.37 -1.2
2,260,975 - ABIE41_RS11010 0.37 +0.0
2,261,055 + ABIE41_RS11010 0.51 -0.1
2,261,109 + ABIE41_RS11010 0.60 -0.2
2,261,385 + +0.5
2,261,698 + ABIE41_RS11015 0.16 -1.0
2,261,841 + ABIE41_RS11015 0.40 -0.8
2,261,841 + ABIE41_RS11015 0.40 -0.0
2,261,841 + ABIE41_RS11015 0.40 +1.8
2,261,841 + ABIE41_RS11015 0.40 -0.5
2,261,842 - ABIE41_RS11015 0.40 +0.2
2,261,842 - ABIE41_RS11015 0.40 -0.5
2,261,842 - ABIE41_RS11015 0.40 +0.0
2,262,003 + ABIE41_RS11015 0.67 +0.3
2,262,030 + ABIE41_RS11015 0.71 -0.2
2,262,031 - ABIE41_RS11015 0.71 -1.8
2,262,031 - ABIE41_RS11015 0.71 -1.3
2,262,063 + ABIE41_RS11015 0.76 -3.0
2,262,269 + -1.0
2,262,269 + -1.4
2,262,913 + ABIE41_RS11020 0.49 -0.2
2,262,913 + ABIE41_RS11020 0.49 -0.1
2,262,914 - ABIE41_RS11020 0.49 -0.6
2,262,914 - ABIE41_RS11020 0.49 +2.8
2,262,914 - ABIE41_RS11020 0.49 +0.8
2,262,914 - ABIE41_RS11020 0.49 -0.1

Or see this region's nucleotide sequence