Strain Fitness in Bosea sp. OAE506 around ABIE41_RS10530

Experiment: R2A with 6-Pentyl-2H-pyran-2-one 0.3133 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS10525 and ABIE41_RS10530 are separated by 96 nucleotidesABIE41_RS10530 and ABIE41_RS10535 overlap by 4 nucleotides ABIE41_RS10525: ABIE41_RS10525 - NAD-dependent epimerase, at 2,171,263 to 2,172,291 _RS10525 ABIE41_RS10530: ABIE41_RS10530 - cbb3-type cytochrome oxidase assembly protein CcoS, at 2,172,388 to 2,172,603 _RS10530 ABIE41_RS10535: ABIE41_RS10535 - heavy metal translocating P-type ATPase, at 2,172,600 to 2,174,807 _RS10535 Position (kb) 2172 2173Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2171.504 kb on + strand, within ABIE41_RS10525at 2171.505 kb on - strand, within ABIE41_RS10525at 2171.505 kb on - strand, within ABIE41_RS10525at 2171.505 kb on - strand, within ABIE41_RS10525at 2171.615 kb on + strand, within ABIE41_RS10525at 2171.616 kb on - strand, within ABIE41_RS10525at 2171.616 kb on - strand, within ABIE41_RS10525at 2171.648 kb on + strand, within ABIE41_RS10525at 2171.765 kb on + strand, within ABIE41_RS10525at 2171.777 kb on + strand, within ABIE41_RS10525at 2171.903 kb on + strand, within ABIE41_RS10525at 2171.903 kb on + strand, within ABIE41_RS10525at 2171.904 kb on - strand, within ABIE41_RS10525at 2172.080 kb on + strand, within ABIE41_RS10525at 2172.080 kb on + strand, within ABIE41_RS10525at 2172.163 kb on + strand, within ABIE41_RS10525at 2172.164 kb on + strand, within ABIE41_RS10525at 2172.513 kb on - strand, within ABIE41_RS10530at 2172.752 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 6-Pentyl-2H-pyran-2-one 0.3133 mM
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2,171,504 + ABIE41_RS10525 0.23 -0.8
2,171,505 - ABIE41_RS10525 0.24 -1.4
2,171,505 - ABIE41_RS10525 0.24 +0.5
2,171,505 - ABIE41_RS10525 0.24 -1.1
2,171,615 + ABIE41_RS10525 0.34 -2.6
2,171,616 - ABIE41_RS10525 0.34 -1.2
2,171,616 - ABIE41_RS10525 0.34 -0.8
2,171,648 + ABIE41_RS10525 0.37 -2.8
2,171,765 + ABIE41_RS10525 0.49 -0.9
2,171,777 + ABIE41_RS10525 0.50 -1.6
2,171,903 + ABIE41_RS10525 0.62 -1.9
2,171,903 + ABIE41_RS10525 0.62 -2.1
2,171,904 - ABIE41_RS10525 0.62 -1.8
2,172,080 + ABIE41_RS10525 0.79 -1.6
2,172,080 + ABIE41_RS10525 0.79 -1.9
2,172,163 + ABIE41_RS10525 0.87 -1.3
2,172,164 + ABIE41_RS10525 0.88 +1.8
2,172,513 - ABIE41_RS10530 0.58 +0.1
2,172,752 - +0.6

Or see this region's nucleotide sequence