Strain Fitness in Bosea sp. OAE506 around ABIE41_RS08310

Experiment: R2A with 6-Pentyl-2H-pyran-2-one 0.3133 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABIE41_RS08305 and ABIE41_RS08310 are separated by 134 nucleotidesABIE41_RS08310 and ABIE41_RS08315 are separated by 108 nucleotides ABIE41_RS08305: ABIE41_RS08305 - homospermidine synthase, at 1,714,505 to 1,715,941 _RS08305 ABIE41_RS08310: ABIE41_RS08310 - phosphodiesterase, at 1,716,076 to 1,716,903 _RS08310 ABIE41_RS08315: ABIE41_RS08315 - ABC transporter substrate-binding protein, at 1,717,012 to 1,718,343 _RS08315 Position (kb) 1716 1717Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1715.133 kb on + strand, within ABIE41_RS08305at 1715.133 kb on + strand, within ABIE41_RS08305at 1715.134 kb on - strand, within ABIE41_RS08305at 1715.134 kb on - strand, within ABIE41_RS08305at 1715.535 kb on + strand, within ABIE41_RS08305at 1715.536 kb on - strand, within ABIE41_RS08305at 1715.575 kb on - strand, within ABIE41_RS08305at 1715.575 kb on - strand, within ABIE41_RS08305at 1715.730 kb on + strand, within ABIE41_RS08305at 1715.730 kb on + strand, within ABIE41_RS08305at 1715.730 kb on + strand, within ABIE41_RS08305at 1715.730 kb on + strand, within ABIE41_RS08305at 1715.731 kb on - strand, within ABIE41_RS08305at 1715.731 kb on - strand, within ABIE41_RS08305at 1715.922 kb on + strandat 1716.008 kb on + strandat 1716.026 kb on + strandat 1716.027 kb on - strandat 1716.077 kb on + strandat 1716.078 kb on - strandat 1716.092 kb on + strandat 1716.191 kb on + strand, within ABIE41_RS08310at 1716.191 kb on + strand, within ABIE41_RS08310at 1716.192 kb on - strand, within ABIE41_RS08310at 1716.725 kb on + strand, within ABIE41_RS08310at 1716.725 kb on + strand, within ABIE41_RS08310at 1716.725 kb on + strand, within ABIE41_RS08310at 1716.725 kb on + strand, within ABIE41_RS08310at 1716.725 kb on + strand, within ABIE41_RS08310at 1716.725 kb on + strand, within ABIE41_RS08310at 1716.725 kb on + strand, within ABIE41_RS08310at 1716.726 kb on - strand, within ABIE41_RS08310at 1716.726 kb on - strand, within ABIE41_RS08310at 1716.726 kb on - strand, within ABIE41_RS08310at 1716.726 kb on - strand, within ABIE41_RS08310at 1716.726 kb on - strand, within ABIE41_RS08310at 1716.726 kb on - strand, within ABIE41_RS08310at 1716.847 kb on + strandat 1716.848 kb on + strandat 1717.049 kb on + strandat 1717.049 kb on + strandat 1717.049 kb on + strandat 1717.049 kb on + strandat 1717.049 kb on + strandat 1717.049 kb on + strandat 1717.049 kb on + strandat 1717.049 kb on + strandat 1717.050 kb on - strandat 1717.050 kb on - strandat 1717.050 kb on - strandat 1717.172 kb on + strand, within ABIE41_RS08315at 1717.172 kb on + strand, within ABIE41_RS08315at 1717.173 kb on - strand, within ABIE41_RS08315at 1717.268 kb on + strand, within ABIE41_RS08315at 1717.269 kb on - strand, within ABIE41_RS08315at 1717.461 kb on - strand, within ABIE41_RS08315at 1717.646 kb on + strand, within ABIE41_RS08315at 1717.646 kb on + strand, within ABIE41_RS08315at 1717.646 kb on + strand, within ABIE41_RS08315at 1717.647 kb on - strand, within ABIE41_RS08315at 1717.647 kb on - strand, within ABIE41_RS08315at 1717.665 kb on - strand, within ABIE41_RS08315at 1717.727 kb on + strand, within ABIE41_RS08315at 1717.727 kb on + strand, within ABIE41_RS08315at 1717.727 kb on + strand, within ABIE41_RS08315at 1717.727 kb on + strand, within ABIE41_RS08315at 1717.727 kb on + strand, within ABIE41_RS08315at 1717.728 kb on - strand, within ABIE41_RS08315at 1717.728 kb on - strand, within ABIE41_RS08315at 1717.733 kb on + strand, within ABIE41_RS08315at 1717.733 kb on + strand, within ABIE41_RS08315at 1717.733 kb on + strand, within ABIE41_RS08315at 1717.734 kb on - strand, within ABIE41_RS08315at 1717.734 kb on - strand, within ABIE41_RS08315at 1717.880 kb on + strand, within ABIE41_RS08315at 1717.880 kb on + strand, within ABIE41_RS08315at 1717.880 kb on + strand, within ABIE41_RS08315at 1717.881 kb on - strand, within ABIE41_RS08315at 1717.881 kb on - strand, within ABIE41_RS08315

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 6-Pentyl-2H-pyran-2-one 0.3133 mM
remove
1,715,133 + ABIE41_RS08305 0.44 -1.7
1,715,133 + ABIE41_RS08305 0.44 -2.3
1,715,134 - ABIE41_RS08305 0.44 -1.2
1,715,134 - ABIE41_RS08305 0.44 -0.8
1,715,535 + ABIE41_RS08305 0.72 +1.1
1,715,536 - ABIE41_RS08305 0.72 -1.8
1,715,575 - ABIE41_RS08305 0.74 -1.8
1,715,575 - ABIE41_RS08305 0.74 -3.1
1,715,730 + ABIE41_RS08305 0.85 -2.4
1,715,730 + ABIE41_RS08305 0.85 -0.9
1,715,730 + ABIE41_RS08305 0.85 -1.5
1,715,730 + ABIE41_RS08305 0.85 -1.4
1,715,731 - ABIE41_RS08305 0.85 -0.5
1,715,731 - ABIE41_RS08305 0.85 +0.6
1,715,922 + -0.8
1,716,008 + -0.8
1,716,026 + +0.3
1,716,027 - +0.1
1,716,077 + -0.2
1,716,078 - -1.2
1,716,092 + -1.2
1,716,191 + ABIE41_RS08310 0.14 -0.0
1,716,191 + ABIE41_RS08310 0.14 +0.2
1,716,192 - ABIE41_RS08310 0.14 -0.4
1,716,725 + ABIE41_RS08310 0.78 +0.0
1,716,725 + ABIE41_RS08310 0.78 -0.5
1,716,725 + ABIE41_RS08310 0.78 +0.3
1,716,725 + ABIE41_RS08310 0.78 +1.4
1,716,725 + ABIE41_RS08310 0.78 +1.0
1,716,725 + ABIE41_RS08310 0.78 -0.4
1,716,725 + ABIE41_RS08310 0.78 -1.2
1,716,726 - ABIE41_RS08310 0.79 -0.3
1,716,726 - ABIE41_RS08310 0.79 +0.1
1,716,726 - ABIE41_RS08310 0.79 +0.0
1,716,726 - ABIE41_RS08310 0.79 +0.9
1,716,726 - ABIE41_RS08310 0.79 +0.5
1,716,726 - ABIE41_RS08310 0.79 +0.4
1,716,847 + +0.1
1,716,848 + -0.1
1,717,049 + +0.8
1,717,049 + +0.6
1,717,049 + +0.4
1,717,049 + +1.1
1,717,049 + +0.0
1,717,049 + +0.5
1,717,049 + -0.5
1,717,049 + +0.0
1,717,050 - +0.2
1,717,050 - +2.8
1,717,050 - +0.2
1,717,172 + ABIE41_RS08315 0.12 +0.2
1,717,172 + ABIE41_RS08315 0.12 +1.6
1,717,173 - ABIE41_RS08315 0.12 +0.1
1,717,268 + ABIE41_RS08315 0.19 -0.4
1,717,269 - ABIE41_RS08315 0.19 -0.4
1,717,461 - ABIE41_RS08315 0.34 +1.5
1,717,646 + ABIE41_RS08315 0.48 -0.7
1,717,646 + ABIE41_RS08315 0.48 -1.5
1,717,646 + ABIE41_RS08315 0.48 +1.6
1,717,647 - ABIE41_RS08315 0.48 -0.4
1,717,647 - ABIE41_RS08315 0.48 -0.6
1,717,665 - ABIE41_RS08315 0.49 +1.0
1,717,727 + ABIE41_RS08315 0.54 -0.1
1,717,727 + ABIE41_RS08315 0.54 -0.2
1,717,727 + ABIE41_RS08315 0.54 -0.0
1,717,727 + ABIE41_RS08315 0.54 +0.4
1,717,727 + ABIE41_RS08315 0.54 +0.0
1,717,728 - ABIE41_RS08315 0.54 +1.3
1,717,728 - ABIE41_RS08315 0.54 -0.3
1,717,733 + ABIE41_RS08315 0.54 +1.1
1,717,733 + ABIE41_RS08315 0.54 +0.1
1,717,733 + ABIE41_RS08315 0.54 -0.3
1,717,734 - ABIE41_RS08315 0.54 +0.2
1,717,734 - ABIE41_RS08315 0.54 +1.5
1,717,880 + ABIE41_RS08315 0.65 +0.3
1,717,880 + ABIE41_RS08315 0.65 -1.2
1,717,880 + ABIE41_RS08315 0.65 +0.4
1,717,881 - ABIE41_RS08315 0.65 +0.4
1,717,881 - ABIE41_RS08315 0.65 -1.1

Or see this region's nucleotide sequence