Strain Fitness in Bosea sp. OAE506 around ABIE41_RS06290

Experiment: R2A with 6-Pentyl-2H-pyran-2-one 0.3133 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABIE41_RS06285 and ABIE41_RS06290 are separated by 0 nucleotidesABIE41_RS06290 and ABIE41_RS06295 are separated by 95 nucleotidesABIE41_RS06295 and ABIE41_RS06300 overlap by 4 nucleotidesABIE41_RS06300 and ABIE41_RS06305 are separated by 157 nucleotides ABIE41_RS06285: ABIE41_RS06285 - pyruvate kinase, at 1,296,836 to 1,298,275 _RS06285 ABIE41_RS06290: ABIE41_RS06290 - hypothetical protein, at 1,298,276 to 1,298,641 _RS06290 ABIE41_RS06295: ABIE41_RS06295 - hypothetical protein, at 1,298,737 to 1,299,084 _RS06295 ABIE41_RS06300: ABIE41_RS06300 - YggT family protein, at 1,299,081 to 1,299,404 _RS06300 ABIE41_RS06305: ABIE41_RS06305 - sodium:solute symporter family protein, at 1,299,562 to 1,301,517 _RS06305 Position (kb) 1298 1299Strain fitness (log2 ratio) -2 -1 0 1 2at 1297.328 kb on - strand, within ABIE41_RS06285at 1297.636 kb on + strand, within ABIE41_RS06285at 1297.636 kb on + strand, within ABIE41_RS06285at 1297.636 kb on + strand, within ABIE41_RS06285at 1297.637 kb on - strand, within ABIE41_RS06285at 1298.331 kb on + strand, within ABIE41_RS06290at 1298.332 kb on - strand, within ABIE41_RS06290at 1298.332 kb on - strand, within ABIE41_RS06290at 1298.349 kb on + strand, within ABIE41_RS06290at 1298.349 kb on + strand, within ABIE41_RS06290at 1298.389 kb on - strand, within ABIE41_RS06290at 1298.389 kb on - strand, within ABIE41_RS06290at 1298.389 kb on - strand, within ABIE41_RS06290at 1298.446 kb on - strand, within ABIE41_RS06290at 1298.539 kb on - strand, within ABIE41_RS06290at 1298.852 kb on + strand, within ABIE41_RS06295at 1298.852 kb on + strand, within ABIE41_RS06295at 1298.852 kb on + strand, within ABIE41_RS06295at 1298.852 kb on + strand, within ABIE41_RS06295at 1298.852 kb on + strand, within ABIE41_RS06295at 1298.852 kb on + strand, within ABIE41_RS06295at 1298.853 kb on - strand, within ABIE41_RS06295at 1298.853 kb on - strand, within ABIE41_RS06295at 1298.853 kb on - strand, within ABIE41_RS06295at 1298.853 kb on - strand, within ABIE41_RS06295at 1298.853 kb on - strand, within ABIE41_RS06295at 1298.853 kb on - strand, within ABIE41_RS06295at 1298.915 kb on + strand, within ABIE41_RS06295at 1298.915 kb on + strand, within ABIE41_RS06295at 1298.915 kb on + strand, within ABIE41_RS06295at 1299.331 kb on + strand, within ABIE41_RS06300at 1299.331 kb on + strand, within ABIE41_RS06300at 1299.331 kb on + strand, within ABIE41_RS06300at 1299.331 kb on + strand, within ABIE41_RS06300at 1299.331 kb on + strand, within ABIE41_RS06300at 1299.332 kb on - strand, within ABIE41_RS06300at 1299.332 kb on - strand, within ABIE41_RS06300at 1299.332 kb on - strand, within ABIE41_RS06300at 1299.332 kb on - strand, within ABIE41_RS06300at 1299.332 kb on - strand, within ABIE41_RS06300at 1299.332 kb on - strand, within ABIE41_RS06300at 1299.332 kb on - strand, within ABIE41_RS06300at 1299.332 kb on - strand, within ABIE41_RS06300at 1299.367 kb on + strand, within ABIE41_RS06300

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 6-Pentyl-2H-pyran-2-one 0.3133 mM
remove
1,297,328 - ABIE41_RS06285 0.34 -0.5
1,297,636 + ABIE41_RS06285 0.56 -1.6
1,297,636 + ABIE41_RS06285 0.56 -1.9
1,297,636 + ABIE41_RS06285 0.56 +0.5
1,297,637 - ABIE41_RS06285 0.56 -2.2
1,298,331 + ABIE41_RS06290 0.15 -0.2
1,298,332 - ABIE41_RS06290 0.15 +0.3
1,298,332 - ABIE41_RS06290 0.15 -1.5
1,298,349 + ABIE41_RS06290 0.20 -1.2
1,298,349 + ABIE41_RS06290 0.20 +1.8
1,298,389 - ABIE41_RS06290 0.31 +0.4
1,298,389 - ABIE41_RS06290 0.31 +0.0
1,298,389 - ABIE41_RS06290 0.31 -0.1
1,298,446 - ABIE41_RS06290 0.46 +2.0
1,298,539 - ABIE41_RS06290 0.72 -0.1
1,298,852 + ABIE41_RS06295 0.33 -0.3
1,298,852 + ABIE41_RS06295 0.33 -0.2
1,298,852 + ABIE41_RS06295 0.33 -0.7
1,298,852 + ABIE41_RS06295 0.33 +0.0
1,298,852 + ABIE41_RS06295 0.33 -0.1
1,298,852 + ABIE41_RS06295 0.33 -0.7
1,298,853 - ABIE41_RS06295 0.33 +0.5
1,298,853 - ABIE41_RS06295 0.33 -0.3
1,298,853 - ABIE41_RS06295 0.33 +0.1
1,298,853 - ABIE41_RS06295 0.33 -1.1
1,298,853 - ABIE41_RS06295 0.33 -0.6
1,298,853 - ABIE41_RS06295 0.33 -0.5
1,298,915 + ABIE41_RS06295 0.51 -0.0
1,298,915 + ABIE41_RS06295 0.51 -0.5
1,298,915 + ABIE41_RS06295 0.51 -0.1
1,299,331 + ABIE41_RS06300 0.77 -0.4
1,299,331 + ABIE41_RS06300 0.77 -0.1
1,299,331 + ABIE41_RS06300 0.77 +0.0
1,299,331 + ABIE41_RS06300 0.77 +0.8
1,299,331 + ABIE41_RS06300 0.77 -0.4
1,299,332 - ABIE41_RS06300 0.77 +0.1
1,299,332 - ABIE41_RS06300 0.77 -0.2
1,299,332 - ABIE41_RS06300 0.77 +0.1
1,299,332 - ABIE41_RS06300 0.77 +0.6
1,299,332 - ABIE41_RS06300 0.77 -0.0
1,299,332 - ABIE41_RS06300 0.77 -1.6
1,299,332 - ABIE41_RS06300 0.77 -0.5
1,299,332 - ABIE41_RS06300 0.77 -1.7
1,299,367 + ABIE41_RS06300 0.88 +0.1

Or see this region's nucleotide sequence