Strain Fitness in Bosea sp. OAE506 around ABIE41_RS03885

Experiment: R2A with 6-Pentyl-2H-pyran-2-one 0.3133 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS03880 and ABIE41_RS03885 are separated by 201 nucleotidesABIE41_RS03885 and ABIE41_RS03890 are separated by 107 nucleotides ABIE41_RS03880: ABIE41_RS03880 - ActS/PrrB/RegB family redox-sensitive histidine kinase, at 806,132 to 807,487 _RS03880 ABIE41_RS03885: ABIE41_RS03885 - polyhydroxyalkanoate depolymerase, at 807,689 to 808,990 _RS03885 ABIE41_RS03890: ABIE41_RS03890 - sodium:proton antiporter, at 809,098 to 810,522 _RS03890 Position (kb) 807 808 809Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 806.946 kb on + strand, within ABIE41_RS03880at 806.946 kb on + strand, within ABIE41_RS03880at 806.946 kb on + strand, within ABIE41_RS03880at 806.946 kb on + strand, within ABIE41_RS03880at 806.946 kb on + strand, within ABIE41_RS03880at 806.946 kb on + strand, within ABIE41_RS03880at 806.946 kb on + strand, within ABIE41_RS03880at 806.946 kb on + strand, within ABIE41_RS03880at 806.947 kb on - strand, within ABIE41_RS03880at 806.947 kb on - strand, within ABIE41_RS03880at 806.947 kb on - strand, within ABIE41_RS03880at 806.947 kb on - strand, within ABIE41_RS03880at 806.947 kb on - strand, within ABIE41_RS03880at 806.947 kb on - strand, within ABIE41_RS03880at 806.947 kb on - strand, within ABIE41_RS03880at 806.947 kb on - strand, within ABIE41_RS03880at 806.947 kb on - strand, within ABIE41_RS03880at 806.947 kb on - strand, within ABIE41_RS03880at 806.947 kb on - strand, within ABIE41_RS03880at 806.947 kb on - strand, within ABIE41_RS03880at 806.947 kb on - strand, within ABIE41_RS03880at 807.000 kb on + strand, within ABIE41_RS03880at 807.001 kb on - strand, within ABIE41_RS03880at 807.192 kb on + strand, within ABIE41_RS03880at 807.192 kb on + strand, within ABIE41_RS03880at 807.192 kb on + strand, within ABIE41_RS03880at 807.218 kb on - strand, within ABIE41_RS03880at 807.595 kb on + strandat 807.595 kb on + strandat 807.595 kb on + strandat 807.595 kb on + strandat 807.596 kb on - strandat 807.596 kb on - strandat 807.596 kb on - strandat 807.614 kb on + strandat 807.614 kb on + strandat 807.615 kb on - strandat 807.616 kb on - strandat 807.673 kb on + strandat 807.673 kb on + strandat 807.673 kb on + strandat 807.673 kb on + strandat 807.673 kb on + strandat 807.674 kb on - strandat 807.674 kb on - strandat 807.677 kb on + strandat 807.677 kb on + strandat 807.677 kb on + strandat 807.677 kb on + strandat 807.677 kb on + strandat 807.677 kb on + strandat 807.678 kb on - strandat 807.678 kb on - strandat 807.702 kb on - strandat 807.800 kb on + strandat 807.800 kb on + strandat 807.800 kb on + strandat 807.801 kb on - strandat 807.801 kb on - strandat 807.801 kb on - strandat 807.801 kb on - strandat 807.801 kb on - strandat 807.966 kb on - strand, within ABIE41_RS03885at 807.966 kb on - strand, within ABIE41_RS03885at 808.094 kb on + strand, within ABIE41_RS03885at 808.094 kb on + strand, within ABIE41_RS03885at 808.094 kb on + strand, within ABIE41_RS03885at 808.094 kb on + strand, within ABIE41_RS03885at 808.095 kb on - strand, within ABIE41_RS03885at 808.095 kb on - strand, within ABIE41_RS03885at 808.095 kb on - strand, within ABIE41_RS03885at 808.161 kb on - strand, within ABIE41_RS03885at 808.161 kb on - strand, within ABIE41_RS03885at 808.169 kb on + strand, within ABIE41_RS03885at 808.169 kb on + strand, within ABIE41_RS03885at 808.169 kb on + strand, within ABIE41_RS03885at 808.170 kb on - strand, within ABIE41_RS03885at 808.170 kb on - strand, within ABIE41_RS03885at 808.170 kb on - strand, within ABIE41_RS03885at 808.442 kb on + strand, within ABIE41_RS03885at 808.442 kb on + strand, within ABIE41_RS03885at 808.443 kb on - strand, within ABIE41_RS03885at 808.517 kb on + strand, within ABIE41_RS03885at 808.517 kb on + strand, within ABIE41_RS03885at 808.517 kb on + strand, within ABIE41_RS03885at 808.517 kb on + strand, within ABIE41_RS03885at 808.517 kb on + strand, within ABIE41_RS03885at 808.517 kb on + strand, within ABIE41_RS03885at 808.517 kb on + strand, within ABIE41_RS03885at 808.517 kb on + strand, within ABIE41_RS03885at 808.518 kb on - strand, within ABIE41_RS03885at 808.518 kb on - strand, within ABIE41_RS03885at 808.518 kb on - strand, within ABIE41_RS03885at 808.518 kb on - strand, within ABIE41_RS03885at 808.518 kb on - strand, within ABIE41_RS03885at 808.518 kb on - strand, within ABIE41_RS03885at 808.572 kb on - strand, within ABIE41_RS03885at 808.580 kb on + strand, within ABIE41_RS03885at 808.580 kb on + strand, within ABIE41_RS03885at 808.581 kb on - strand, within ABIE41_RS03885at 808.581 kb on - strand, within ABIE41_RS03885at 808.613 kb on + strand, within ABIE41_RS03885at 808.613 kb on + strand, within ABIE41_RS03885at 808.614 kb on - strand, within ABIE41_RS03885at 808.614 kb on - strand, within ABIE41_RS03885at 808.614 kb on - strand, within ABIE41_RS03885at 808.820 kb on + strand, within ABIE41_RS03885at 808.820 kb on + strand, within ABIE41_RS03885at 808.820 kb on + strand, within ABIE41_RS03885at 808.820 kb on + strand, within ABIE41_RS03885at 808.821 kb on - strand, within ABIE41_RS03885at 809.023 kb on - strandat 809.112 kb on + strandat 809.112 kb on + strandat 809.113 kb on - strandat 809.166 kb on - strandat 809.166 kb on - strandat 809.213 kb on + strandat 809.213 kb on + strandat 809.243 kb on + strand, within ABIE41_RS03890at 809.243 kb on + strand, within ABIE41_RS03890at 809.243 kb on + strand, within ABIE41_RS03890at 809.243 kb on + strand, within ABIE41_RS03890at 809.243 kb on + strand, within ABIE41_RS03890at 809.244 kb on - strand, within ABIE41_RS03890at 809.244 kb on - strand, within ABIE41_RS03890at 809.244 kb on - strand, within ABIE41_RS03890at 809.244 kb on - strand, within ABIE41_RS03890at 809.244 kb on - strand, within ABIE41_RS03890at 809.244 kb on - strand, within ABIE41_RS03890at 809.354 kb on + strand, within ABIE41_RS03890at 809.354 kb on + strand, within ABIE41_RS03890at 809.354 kb on + strand, within ABIE41_RS03890at 809.354 kb on + strand, within ABIE41_RS03890at 809.354 kb on + strand, within ABIE41_RS03890at 809.355 kb on - strand, within ABIE41_RS03890at 809.355 kb on - strand, within ABIE41_RS03890at 809.357 kb on + strand, within ABIE41_RS03890at 809.405 kb on + strand, within ABIE41_RS03890at 809.405 kb on + strand, within ABIE41_RS03890at 809.846 kb on + strand, within ABIE41_RS03890at 809.846 kb on + strand, within ABIE41_RS03890at 809.847 kb on - strand, within ABIE41_RS03890

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 6-Pentyl-2H-pyran-2-one 0.3133 mM
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806,946 + ABIE41_RS03880 0.60 -1.0
806,946 + ABIE41_RS03880 0.60 -0.9
806,946 + ABIE41_RS03880 0.60 -1.1
806,946 + ABIE41_RS03880 0.60 +0.1
806,946 + ABIE41_RS03880 0.60 +0.2
806,946 + ABIE41_RS03880 0.60 -0.1
806,946 + ABIE41_RS03880 0.60 -0.5
806,946 + ABIE41_RS03880 0.60 -0.9
806,947 - ABIE41_RS03880 0.60 +0.0
806,947 - ABIE41_RS03880 0.60 +0.5
806,947 - ABIE41_RS03880 0.60 -0.1
806,947 - ABIE41_RS03880 0.60 +0.2
806,947 - ABIE41_RS03880 0.60 -0.1
806,947 - ABIE41_RS03880 0.60 -0.4
806,947 - ABIE41_RS03880 0.60 -0.0
806,947 - ABIE41_RS03880 0.60 -0.2
806,947 - ABIE41_RS03880 0.60 +2.5
806,947 - ABIE41_RS03880 0.60 +0.3
806,947 - ABIE41_RS03880 0.60 +0.0
806,947 - ABIE41_RS03880 0.60 +0.1
806,947 - ABIE41_RS03880 0.60 +1.1
807,000 + ABIE41_RS03880 0.64 -0.4
807,001 - ABIE41_RS03880 0.64 -0.8
807,192 + ABIE41_RS03880 0.78 -0.8
807,192 + ABIE41_RS03880 0.78 +0.3
807,192 + ABIE41_RS03880 0.78 -0.5
807,218 - ABIE41_RS03880 0.80 -0.8
807,595 + +0.1
807,595 + -0.4
807,595 + +0.2
807,595 + +1.4
807,596 - +0.8
807,596 - +0.3
807,596 - +0.5
807,614 + -0.1
807,614 + -0.0
807,615 - -1.1
807,616 - -0.1
807,673 + -0.1
807,673 + -0.8
807,673 + -0.2
807,673 + +0.5
807,673 + +0.4
807,674 - +0.1
807,674 - +1.3
807,677 + -1.1
807,677 + +0.2
807,677 + +0.2
807,677 + +0.5
807,677 + +0.4
807,677 + +0.1
807,678 - +0.6
807,678 - +1.3
807,702 - -0.5
807,800 + +2.5
807,800 + -0.4
807,800 + +0.1
807,801 - +0.1
807,801 - +2.1
807,801 - +0.6
807,801 - +0.3
807,801 - +0.4
807,966 - ABIE41_RS03885 0.21 +0.8
807,966 - ABIE41_RS03885 0.21 +0.9
808,094 + ABIE41_RS03885 0.31 +0.2
808,094 + ABIE41_RS03885 0.31 +0.4
808,094 + ABIE41_RS03885 0.31 -1.1
808,094 + ABIE41_RS03885 0.31 +0.7
808,095 - ABIE41_RS03885 0.31 -1.3
808,095 - ABIE41_RS03885 0.31 +0.5
808,095 - ABIE41_RS03885 0.31 -0.1
808,161 - ABIE41_RS03885 0.36 +1.2
808,161 - ABIE41_RS03885 0.36 -0.8
808,169 + ABIE41_RS03885 0.37 +3.0
808,169 + ABIE41_RS03885 0.37 -0.7
808,169 + ABIE41_RS03885 0.37 +0.3
808,170 - ABIE41_RS03885 0.37 -0.1
808,170 - ABIE41_RS03885 0.37 +0.8
808,170 - ABIE41_RS03885 0.37 -1.5
808,442 + ABIE41_RS03885 0.58 -0.9
808,442 + ABIE41_RS03885 0.58 +0.2
808,443 - ABIE41_RS03885 0.58 +1.1
808,517 + ABIE41_RS03885 0.64 +0.5
808,517 + ABIE41_RS03885 0.64 +0.1
808,517 + ABIE41_RS03885 0.64 -0.5
808,517 + ABIE41_RS03885 0.64 +1.5
808,517 + ABIE41_RS03885 0.64 -0.2
808,517 + ABIE41_RS03885 0.64 +1.0
808,517 + ABIE41_RS03885 0.64 +2.5
808,517 + ABIE41_RS03885 0.64 -0.3
808,518 - ABIE41_RS03885 0.64 +2.3
808,518 - ABIE41_RS03885 0.64 +0.4
808,518 - ABIE41_RS03885 0.64 -1.1
808,518 - ABIE41_RS03885 0.64 +0.0
808,518 - ABIE41_RS03885 0.64 -0.9
808,518 - ABIE41_RS03885 0.64 +0.8
808,572 - ABIE41_RS03885 0.68 -1.0
808,580 + ABIE41_RS03885 0.68 +0.4
808,580 + ABIE41_RS03885 0.68 +0.1
808,581 - ABIE41_RS03885 0.69 -0.7
808,581 - ABIE41_RS03885 0.69 +0.2
808,613 + ABIE41_RS03885 0.71 +0.6
808,613 + ABIE41_RS03885 0.71 +0.1
808,614 - ABIE41_RS03885 0.71 -0.5
808,614 - ABIE41_RS03885 0.71 +0.0
808,614 - ABIE41_RS03885 0.71 -0.1
808,820 + ABIE41_RS03885 0.87 -0.1
808,820 + ABIE41_RS03885 0.87 +0.0
808,820 + ABIE41_RS03885 0.87 -0.7
808,820 + ABIE41_RS03885 0.87 -0.3
808,821 - ABIE41_RS03885 0.87 +0.6
809,023 - -0.7
809,112 + -0.3
809,112 + +0.1
809,113 - -3.3
809,166 - -0.1
809,166 - -0.4
809,213 + -1.3
809,213 + -1.1
809,243 + ABIE41_RS03890 0.10 -0.5
809,243 + ABIE41_RS03890 0.10 -1.5
809,243 + ABIE41_RS03890 0.10 +2.5
809,243 + ABIE41_RS03890 0.10 -1.2
809,243 + ABIE41_RS03890 0.10 -0.9
809,244 - ABIE41_RS03890 0.10 -2.4
809,244 - ABIE41_RS03890 0.10 -0.7
809,244 - ABIE41_RS03890 0.10 -1.1
809,244 - ABIE41_RS03890 0.10 -0.7
809,244 - ABIE41_RS03890 0.10 -0.5
809,244 - ABIE41_RS03890 0.10 -1.1
809,354 + ABIE41_RS03890 0.18 +0.9
809,354 + ABIE41_RS03890 0.18 -1.5
809,354 + ABIE41_RS03890 0.18 -2.7
809,354 + ABIE41_RS03890 0.18 -1.5
809,354 + ABIE41_RS03890 0.18 -0.6
809,355 - ABIE41_RS03890 0.18 -0.9
809,355 - ABIE41_RS03890 0.18 -2.2
809,357 + ABIE41_RS03890 0.18 +1.9
809,405 + ABIE41_RS03890 0.22 -0.5
809,405 + ABIE41_RS03890 0.22 -1.5
809,846 + ABIE41_RS03890 0.52 -2.3
809,846 + ABIE41_RS03890 0.52 -2.8
809,847 - ABIE41_RS03890 0.53 -1.0

Or see this region's nucleotide sequence