Experiment: Bas28
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03894 and ECD_03895 are separated by 132 nucleotides ECD_03895 and ECD_03896 are separated by 252 nucleotides
ECD_03894: ECD_03894 - 23S rRNA pseudouridine(2604) synthase, at 4,137,725 to 4,138,597
_03894
ECD_03895: ECD_03895 - DUF3811 family protein, at 4,138,730 to 4,139,002
_03895
ECD_03896: ECD_03896 - lysine-sensitive aspartokinase 3, at 4,139,255 to 4,140,604
_03896
Position (kb)
4138
4139
4140 Strain fitness (log2 ratio)
-2
-1
0
1 at 4137.754 kb on + strand at 4137.758 kb on + strand at 4137.931 kb on + strand, within ECD_03894 at 4137.931 kb on + strand, within ECD_03894 at 4137.960 kb on + strand, within ECD_03894 at 4137.960 kb on + strand, within ECD_03894 at 4137.960 kb on + strand, within ECD_03894 at 4137.960 kb on + strand, within ECD_03894 at 4137.961 kb on - strand, within ECD_03894 at 4137.961 kb on - strand, within ECD_03894 at 4137.961 kb on - strand, within ECD_03894 at 4137.961 kb on - strand, within ECD_03894 at 4138.096 kb on + strand, within ECD_03894 at 4138.133 kb on + strand, within ECD_03894 at 4138.357 kb on + strand, within ECD_03894 at 4138.358 kb on - strand, within ECD_03894 at 4138.411 kb on - strand, within ECD_03894 at 4138.507 kb on + strand, within ECD_03894 at 4138.565 kb on - strand at 4138.753 kb on + strand at 4138.753 kb on + strand at 4138.792 kb on + strand, within ECD_03895 at 4138.793 kb on - strand, within ECD_03895 at 4138.793 kb on - strand, within ECD_03895 at 4138.795 kb on - strand, within ECD_03895 at 4138.795 kb on - strand, within ECD_03895 at 4138.867 kb on - strand, within ECD_03895 at 4138.876 kb on + strand, within ECD_03895 at 4138.876 kb on + strand, within ECD_03895 at 4138.877 kb on - strand, within ECD_03895 at 4138.984 kb on + strand at 4138.987 kb on + strand at 4139.069 kb on - strand at 4139.091 kb on + strand at 4139.146 kb on + strand at 4139.177 kb on + strand at 4139.177 kb on + strand at 4139.178 kb on - strand at 4139.201 kb on + strand at 4139.202 kb on - strand at 4139.202 kb on - strand at 4139.231 kb on + strand at 4139.231 kb on + strand at 4139.233 kb on + strand at 4139.247 kb on + strand at 4139.248 kb on - strand at 4139.253 kb on - strand at 4139.269 kb on + strand at 4139.272 kb on + strand at 4139.388 kb on - strand at 4139.583 kb on - strand, within ECD_03896 at 4139.583 kb on - strand, within ECD_03896 at 4139.596 kb on + strand, within ECD_03896 at 4139.596 kb on + strand, within ECD_03896 at 4139.597 kb on - strand, within ECD_03896 at 4139.653 kb on + strand, within ECD_03896 at 4139.654 kb on - strand, within ECD_03896 at 4139.731 kb on + strand, within ECD_03896 at 4139.746 kb on + strand, within ECD_03896 at 4139.801 kb on + strand, within ECD_03896 at 4139.801 kb on + strand, within ECD_03896 at 4139.906 kb on + strand, within ECD_03896 at 4139.925 kb on + strand, within ECD_03896 at 4139.925 kb on + strand, within ECD_03896 at 4139.925 kb on + strand, within ECD_03896 at 4139.926 kb on - strand, within ECD_03896 at 4139.950 kb on + strand, within ECD_03896 at 4139.951 kb on - strand, within ECD_03896 at 4139.970 kb on - strand, within ECD_03896 at 4139.970 kb on - strand, within ECD_03896 at 4139.995 kb on + strand, within ECD_03896 at 4139.996 kb on - strand, within ECD_03896
Per-strain Table
Position Strand Gene LocusTag Fraction Bas28 remove 4,137,754 + -0.4 4,137,758 + -0.7 4,137,931 + ECD_03894 0.24 -0.2 4,137,931 + ECD_03894 0.24 +0.3 4,137,960 + ECD_03894 0.27 -0.5 4,137,960 + ECD_03894 0.27 -0.4 4,137,960 + ECD_03894 0.27 +0.9 4,137,960 + ECD_03894 0.27 +0.3 4,137,961 - ECD_03894 0.27 +0.5 4,137,961 - ECD_03894 0.27 +1.3 4,137,961 - ECD_03894 0.27 +0.6 4,137,961 - ECD_03894 0.27 +0.2 4,138,096 + ECD_03894 0.42 +0.2 4,138,133 + ECD_03894 0.47 -0.2 4,138,357 + ECD_03894 0.72 -0.5 4,138,358 - ECD_03894 0.73 -0.1 4,138,411 - ECD_03894 0.79 -0.0 4,138,507 + ECD_03894 0.90 -0.6 4,138,565 - -0.8 4,138,753 + +0.3 4,138,753 + +0.2 4,138,792 + ECD_03895 0.23 -0.2 4,138,793 - ECD_03895 0.23 -0.5 4,138,793 - ECD_03895 0.23 -0.2 4,138,795 - ECD_03895 0.24 -0.3 4,138,795 - ECD_03895 0.24 -0.7 4,138,867 - ECD_03895 0.50 -0.1 4,138,876 + ECD_03895 0.53 -0.2 4,138,876 + ECD_03895 0.53 -0.7 4,138,877 - ECD_03895 0.54 -0.1 4,138,984 + +0.0 4,138,987 + +0.4 4,139,069 - -0.7 4,139,091 + +0.7 4,139,146 + +0.3 4,139,177 + +0.5 4,139,177 + +0.9 4,139,178 - +0.0 4,139,201 + +0.7 4,139,202 - +0.3 4,139,202 - -2.4 4,139,231 + +0.1 4,139,231 + -0.1 4,139,233 + +0.7 4,139,247 + -0.3 4,139,248 - -0.8 4,139,253 - +0.8 4,139,269 + -0.8 4,139,272 + +0.4 4,139,388 - +0.5 4,139,583 - ECD_03896 0.24 +0.5 4,139,583 - ECD_03896 0.24 +0.4 4,139,596 + ECD_03896 0.25 +0.2 4,139,596 + ECD_03896 0.25 +0.6 4,139,597 - ECD_03896 0.25 +0.4 4,139,653 + ECD_03896 0.29 +0.2 4,139,654 - ECD_03896 0.30 +0.2 4,139,731 + ECD_03896 0.35 +0.5 4,139,746 + ECD_03896 0.36 -0.1 4,139,801 + ECD_03896 0.40 -0.2 4,139,801 + ECD_03896 0.40 -0.3 4,139,906 + ECD_03896 0.48 +0.2 4,139,925 + ECD_03896 0.50 -0.0 4,139,925 + ECD_03896 0.50 +0.0 4,139,925 + ECD_03896 0.50 +1.1 4,139,926 - ECD_03896 0.50 +1.2 4,139,950 + ECD_03896 0.51 +0.1 4,139,951 - ECD_03896 0.52 +0.0 4,139,970 - ECD_03896 0.53 +0.1 4,139,970 - ECD_03896 0.53 -0.3 4,139,995 + ECD_03896 0.55 +0.1 4,139,996 - ECD_03896 0.55 -0.5
Or see this region's nucleotide sequence