Strain Fitness in Escherichia coli BL21 around ECD_03712

Experiment: Bas28

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03710 and ECD_03711 are separated by 25 nucleotidesECD_03711 and ECD_03712 are separated by 52 nucleotidesECD_03712 and ECD_03713 overlap by 92 nucleotides ECD_03710: ECD_03710 - putative permease, at 3,909,249 to 3,910,472 _03710 ECD_03711: ECD_03711 - hypothetical protein, at 3,910,498 to 3,910,851 _03711 ECD_03712: ECD_03712 - Carbamate kinase-like protein yahI, at 3,910,904 to 3,911,944 _03712 ECD_03713: ECD_03713 - hypothetical protein, at 3,911,853 to 3,913,328 _03713 Position (kb) 3910 3911 3912Strain fitness (log2 ratio) -1 0 1at 3909.974 kb on - strand, within ECD_03710at 3909.974 kb on - strand, within ECD_03710at 3909.982 kb on + strand, within ECD_03710at 3909.982 kb on + strand, within ECD_03710at 3909.982 kb on + strand, within ECD_03710at 3909.982 kb on + strand, within ECD_03710at 3909.982 kb on + strand, within ECD_03710at 3909.983 kb on - strand, within ECD_03710at 3909.983 kb on - strand, within ECD_03710at 3909.983 kb on - strand, within ECD_03710at 3909.983 kb on - strand, within ECD_03710at 3910.089 kb on + strand, within ECD_03710at 3910.129 kb on - strand, within ECD_03710at 3910.137 kb on + strand, within ECD_03710at 3910.138 kb on - strand, within ECD_03710at 3910.138 kb on - strand, within ECD_03710at 3910.154 kb on + strand, within ECD_03710at 3910.154 kb on + strand, within ECD_03710at 3910.154 kb on + strand, within ECD_03710at 3910.155 kb on - strand, within ECD_03710at 3910.155 kb on - strand, within ECD_03710at 3910.155 kb on - strand, within ECD_03710at 3910.252 kb on + strand, within ECD_03710at 3910.252 kb on + strand, within ECD_03710at 3910.252 kb on + strand, within ECD_03710at 3910.252 kb on + strand, within ECD_03710at 3910.253 kb on - strand, within ECD_03710at 3910.253 kb on - strand, within ECD_03710at 3910.302 kb on + strand, within ECD_03710at 3910.302 kb on + strand, within ECD_03710at 3910.303 kb on - strand, within ECD_03710at 3910.303 kb on - strand, within ECD_03710at 3910.337 kb on + strand, within ECD_03710at 3910.466 kb on + strandat 3910.472 kb on + strandat 3910.472 kb on + strandat 3910.473 kb on - strandat 3910.473 kb on - strandat 3910.473 kb on - strandat 3910.473 kb on - strandat 3910.473 kb on - strandat 3910.475 kb on + strandat 3910.476 kb on - strandat 3910.476 kb on - strandat 3910.476 kb on - strandat 3910.476 kb on - strandat 3910.476 kb on - strandat 3910.476 kb on - strandat 3910.476 kb on - strandat 3910.489 kb on - strandat 3910.507 kb on - strandat 3910.523 kb on + strandat 3910.549 kb on - strand, within ECD_03711at 3910.589 kb on - strand, within ECD_03711at 3910.758 kb on + strand, within ECD_03711at 3910.759 kb on - strand, within ECD_03711at 3910.759 kb on - strand, within ECD_03711at 3910.759 kb on - strand, within ECD_03711at 3910.824 kb on + strandat 3910.825 kb on - strandat 3910.870 kb on + strandat 3910.881 kb on + strandat 3910.881 kb on + strandat 3910.881 kb on + strandat 3910.882 kb on - strandat 3910.949 kb on + strandat 3911.137 kb on + strand, within ECD_03712at 3911.137 kb on + strand, within ECD_03712at 3911.592 kb on + strand, within ECD_03712at 3911.593 kb on - strand, within ECD_03712at 3911.611 kb on + strand, within ECD_03712at 3911.611 kb on + strand, within ECD_03712at 3911.612 kb on - strand, within ECD_03712at 3911.711 kb on + strand, within ECD_03712at 3911.712 kb on - strand, within ECD_03712at 3911.714 kb on + strand, within ECD_03712at 3911.740 kb on + strand, within ECD_03712at 3911.749 kb on + strand, within ECD_03712at 3911.749 kb on + strand, within ECD_03712at 3911.749 kb on + strand, within ECD_03712at 3911.749 kb on + strand, within ECD_03712at 3911.750 kb on - strand, within ECD_03712at 3911.750 kb on - strand, within ECD_03712at 3911.778 kb on + strand, within ECD_03712at 3911.778 kb on + strand, within ECD_03712at 3911.778 kb on + strand, within ECD_03712at 3911.792 kb on - strand, within ECD_03712at 3911.792 kb on - strand, within ECD_03712at 3911.795 kb on - strand, within ECD_03712at 3911.898 kb on + strandat 3911.898 kb on + strandat 3911.899 kb on - strandat 3912.071 kb on + strand, within ECD_03713at 3912.071 kb on + strand, within ECD_03713at 3912.072 kb on - strand, within ECD_03713at 3912.110 kb on + strand, within ECD_03713at 3912.110 kb on + strand, within ECD_03713at 3912.119 kb on + strand, within ECD_03713at 3912.210 kb on - strand, within ECD_03713at 3912.411 kb on - strand, within ECD_03713at 3912.579 kb on - strand, within ECD_03713at 3912.746 kb on + strand, within ECD_03713at 3912.752 kb on + strand, within ECD_03713at 3912.752 kb on + strand, within ECD_03713at 3912.835 kb on + strand, within ECD_03713at 3912.836 kb on - strand, within ECD_03713at 3912.933 kb on - strand, within ECD_03713

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas28
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3,909,974 - ECD_03710 0.59 -0.4
3,909,974 - ECD_03710 0.59 -0.2
3,909,982 + ECD_03710 0.60 -0.1
3,909,982 + ECD_03710 0.60 +0.3
3,909,982 + ECD_03710 0.60 +0.2
3,909,982 + ECD_03710 0.60 -0.2
3,909,982 + ECD_03710 0.60 +1.1
3,909,983 - ECD_03710 0.60 -0.3
3,909,983 - ECD_03710 0.60 -0.2
3,909,983 - ECD_03710 0.60 +0.9
3,909,983 - ECD_03710 0.60 -0.2
3,910,089 + ECD_03710 0.69 +0.7
3,910,129 - ECD_03710 0.72 -0.2
3,910,137 + ECD_03710 0.73 +0.8
3,910,138 - ECD_03710 0.73 -0.1
3,910,138 - ECD_03710 0.73 +0.2
3,910,154 + ECD_03710 0.74 -1.1
3,910,154 + ECD_03710 0.74 -1.0
3,910,154 + ECD_03710 0.74 +0.4
3,910,155 - ECD_03710 0.74 +0.2
3,910,155 - ECD_03710 0.74 +0.2
3,910,155 - ECD_03710 0.74 +0.7
3,910,252 + ECD_03710 0.82 +0.5
3,910,252 + ECD_03710 0.82 -0.7
3,910,252 + ECD_03710 0.82 +1.1
3,910,252 + ECD_03710 0.82 +0.4
3,910,253 - ECD_03710 0.82 -0.5
3,910,253 - ECD_03710 0.82 -0.3
3,910,302 + ECD_03710 0.86 -0.7
3,910,302 + ECD_03710 0.86 +0.7
3,910,303 - ECD_03710 0.86 +0.4
3,910,303 - ECD_03710 0.86 +0.3
3,910,337 + ECD_03710 0.89 -0.5
3,910,466 + +0.4
3,910,472 + +0.2
3,910,472 + -1.0
3,910,473 - +0.0
3,910,473 - -0.5
3,910,473 - -0.0
3,910,473 - -0.0
3,910,473 - +0.2
3,910,475 + +0.3
3,910,476 - +0.0
3,910,476 - -0.2
3,910,476 - +0.3
3,910,476 - -0.1
3,910,476 - +0.1
3,910,476 - -0.3
3,910,476 - +0.1
3,910,489 - -0.2
3,910,507 - +0.0
3,910,523 + +0.0
3,910,549 - ECD_03711 0.14 +0.6
3,910,589 - ECD_03711 0.26 +0.7
3,910,758 + ECD_03711 0.73 -0.5
3,910,759 - ECD_03711 0.74 +0.6
3,910,759 - ECD_03711 0.74 +0.3
3,910,759 - ECD_03711 0.74 -0.7
3,910,824 + -1.1
3,910,825 - +0.0
3,910,870 + -0.2
3,910,881 + -0.6
3,910,881 + +0.2
3,910,881 + -0.4
3,910,882 - +0.3
3,910,949 + -0.6
3,911,137 + ECD_03712 0.22 -0.8
3,911,137 + ECD_03712 0.22 +0.5
3,911,592 + ECD_03712 0.66 -0.6
3,911,593 - ECD_03712 0.66 +0.8
3,911,611 + ECD_03712 0.68 -0.2
3,911,611 + ECD_03712 0.68 +0.2
3,911,612 - ECD_03712 0.68 +0.4
3,911,711 + ECD_03712 0.78 -1.4
3,911,712 - ECD_03712 0.78 +0.2
3,911,714 + ECD_03712 0.78 -0.6
3,911,740 + ECD_03712 0.80 -0.8
3,911,749 + ECD_03712 0.81 +1.0
3,911,749 + ECD_03712 0.81 -1.2
3,911,749 + ECD_03712 0.81 -1.3
3,911,749 + ECD_03712 0.81 -0.3
3,911,750 - ECD_03712 0.81 -1.2
3,911,750 - ECD_03712 0.81 +0.4
3,911,778 + ECD_03712 0.84 -0.0
3,911,778 + ECD_03712 0.84 -1.5
3,911,778 + ECD_03712 0.84 +0.3
3,911,792 - ECD_03712 0.85 -0.1
3,911,792 - ECD_03712 0.85 -0.9
3,911,795 - ECD_03712 0.86 -1.7
3,911,898 + +1.1
3,911,898 + -0.2
3,911,899 - -0.6
3,912,071 + ECD_03713 0.15 -0.4
3,912,071 + ECD_03713 0.15 -0.0
3,912,072 - ECD_03713 0.15 -0.2
3,912,110 + ECD_03713 0.17 +0.1
3,912,110 + ECD_03713 0.17 +0.4
3,912,119 + ECD_03713 0.18 -0.6
3,912,210 - ECD_03713 0.24 -0.2
3,912,411 - ECD_03713 0.38 -0.1
3,912,579 - ECD_03713 0.49 +1.0
3,912,746 + ECD_03713 0.61 -0.6
3,912,752 + ECD_03713 0.61 +0.0
3,912,752 + ECD_03713 0.61 +0.1
3,912,835 + ECD_03713 0.67 -0.7
3,912,836 - ECD_03713 0.67 -0.1
3,912,933 - ECD_03713 0.73 -0.5

Or see this region's nucleotide sequence