Experiment: Bas28
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03710 and ECD_03711 are separated by 25 nucleotides ECD_03711 and ECD_03712 are separated by 52 nucleotides ECD_03712 and ECD_03713 overlap by 92 nucleotides
ECD_03710: ECD_03710 - putative permease, at 3,909,249 to 3,910,472
_03710
ECD_03711: ECD_03711 - hypothetical protein, at 3,910,498 to 3,910,851
_03711
ECD_03712: ECD_03712 - Carbamate kinase-like protein yahI, at 3,910,904 to 3,911,944
_03712
ECD_03713: ECD_03713 - hypothetical protein, at 3,911,853 to 3,913,328
_03713
Position (kb)
3910
3911
3912 Strain fitness (log2 ratio)
-1
0
1 at 3909.974 kb on - strand, within ECD_03710 at 3909.974 kb on - strand, within ECD_03710 at 3909.982 kb on + strand, within ECD_03710 at 3909.982 kb on + strand, within ECD_03710 at 3909.982 kb on + strand, within ECD_03710 at 3909.982 kb on + strand, within ECD_03710 at 3909.982 kb on + strand, within ECD_03710 at 3909.983 kb on - strand, within ECD_03710 at 3909.983 kb on - strand, within ECD_03710 at 3909.983 kb on - strand, within ECD_03710 at 3909.983 kb on - strand, within ECD_03710 at 3910.089 kb on + strand, within ECD_03710 at 3910.129 kb on - strand, within ECD_03710 at 3910.137 kb on + strand, within ECD_03710 at 3910.138 kb on - strand, within ECD_03710 at 3910.138 kb on - strand, within ECD_03710 at 3910.154 kb on + strand, within ECD_03710 at 3910.154 kb on + strand, within ECD_03710 at 3910.154 kb on + strand, within ECD_03710 at 3910.155 kb on - strand, within ECD_03710 at 3910.155 kb on - strand, within ECD_03710 at 3910.155 kb on - strand, within ECD_03710 at 3910.252 kb on + strand, within ECD_03710 at 3910.252 kb on + strand, within ECD_03710 at 3910.252 kb on + strand, within ECD_03710 at 3910.252 kb on + strand, within ECD_03710 at 3910.253 kb on - strand, within ECD_03710 at 3910.253 kb on - strand, within ECD_03710 at 3910.302 kb on + strand, within ECD_03710 at 3910.302 kb on + strand, within ECD_03710 at 3910.303 kb on - strand, within ECD_03710 at 3910.303 kb on - strand, within ECD_03710 at 3910.337 kb on + strand, within ECD_03710 at 3910.466 kb on + strand at 3910.472 kb on + strand at 3910.472 kb on + strand at 3910.473 kb on - strand at 3910.473 kb on - strand at 3910.473 kb on - strand at 3910.473 kb on - strand at 3910.473 kb on - strand at 3910.475 kb on + strand at 3910.476 kb on - strand at 3910.476 kb on - strand at 3910.476 kb on - strand at 3910.476 kb on - strand at 3910.476 kb on - strand at 3910.476 kb on - strand at 3910.476 kb on - strand at 3910.489 kb on - strand at 3910.507 kb on - strand at 3910.523 kb on + strand at 3910.549 kb on - strand, within ECD_03711 at 3910.589 kb on - strand, within ECD_03711 at 3910.758 kb on + strand, within ECD_03711 at 3910.759 kb on - strand, within ECD_03711 at 3910.759 kb on - strand, within ECD_03711 at 3910.759 kb on - strand, within ECD_03711 at 3910.824 kb on + strand at 3910.825 kb on - strand at 3910.870 kb on + strand at 3910.881 kb on + strand at 3910.881 kb on + strand at 3910.881 kb on + strand at 3910.882 kb on - strand at 3910.949 kb on + strand at 3911.137 kb on + strand, within ECD_03712 at 3911.137 kb on + strand, within ECD_03712 at 3911.592 kb on + strand, within ECD_03712 at 3911.593 kb on - strand, within ECD_03712 at 3911.611 kb on + strand, within ECD_03712 at 3911.611 kb on + strand, within ECD_03712 at 3911.612 kb on - strand, within ECD_03712 at 3911.711 kb on + strand, within ECD_03712 at 3911.712 kb on - strand, within ECD_03712 at 3911.714 kb on + strand, within ECD_03712 at 3911.740 kb on + strand, within ECD_03712 at 3911.749 kb on + strand, within ECD_03712 at 3911.749 kb on + strand, within ECD_03712 at 3911.749 kb on + strand, within ECD_03712 at 3911.749 kb on + strand, within ECD_03712 at 3911.750 kb on - strand, within ECD_03712 at 3911.750 kb on - strand, within ECD_03712 at 3911.778 kb on + strand, within ECD_03712 at 3911.778 kb on + strand, within ECD_03712 at 3911.778 kb on + strand, within ECD_03712 at 3911.792 kb on - strand, within ECD_03712 at 3911.792 kb on - strand, within ECD_03712 at 3911.795 kb on - strand, within ECD_03712 at 3911.898 kb on + strand at 3911.898 kb on + strand at 3911.899 kb on - strand at 3912.071 kb on + strand, within ECD_03713 at 3912.071 kb on + strand, within ECD_03713 at 3912.072 kb on - strand, within ECD_03713 at 3912.110 kb on + strand, within ECD_03713 at 3912.110 kb on + strand, within ECD_03713 at 3912.119 kb on + strand, within ECD_03713 at 3912.210 kb on - strand, within ECD_03713 at 3912.411 kb on - strand, within ECD_03713 at 3912.579 kb on - strand, within ECD_03713 at 3912.746 kb on + strand, within ECD_03713 at 3912.752 kb on + strand, within ECD_03713 at 3912.752 kb on + strand, within ECD_03713 at 3912.835 kb on + strand, within ECD_03713 at 3912.836 kb on - strand, within ECD_03713 at 3912.933 kb on - strand, within ECD_03713
Per-strain Table
Position Strand Gene LocusTag Fraction Bas28 remove 3,909,974 - ECD_03710 0.59 -0.4 3,909,974 - ECD_03710 0.59 -0.2 3,909,982 + ECD_03710 0.60 -0.1 3,909,982 + ECD_03710 0.60 +0.3 3,909,982 + ECD_03710 0.60 +0.2 3,909,982 + ECD_03710 0.60 -0.2 3,909,982 + ECD_03710 0.60 +1.1 3,909,983 - ECD_03710 0.60 -0.3 3,909,983 - ECD_03710 0.60 -0.2 3,909,983 - ECD_03710 0.60 +0.9 3,909,983 - ECD_03710 0.60 -0.2 3,910,089 + ECD_03710 0.69 +0.7 3,910,129 - ECD_03710 0.72 -0.2 3,910,137 + ECD_03710 0.73 +0.8 3,910,138 - ECD_03710 0.73 -0.1 3,910,138 - ECD_03710 0.73 +0.2 3,910,154 + ECD_03710 0.74 -1.1 3,910,154 + ECD_03710 0.74 -1.0 3,910,154 + ECD_03710 0.74 +0.4 3,910,155 - ECD_03710 0.74 +0.2 3,910,155 - ECD_03710 0.74 +0.2 3,910,155 - ECD_03710 0.74 +0.7 3,910,252 + ECD_03710 0.82 +0.5 3,910,252 + ECD_03710 0.82 -0.7 3,910,252 + ECD_03710 0.82 +1.1 3,910,252 + ECD_03710 0.82 +0.4 3,910,253 - ECD_03710 0.82 -0.5 3,910,253 - ECD_03710 0.82 -0.3 3,910,302 + ECD_03710 0.86 -0.7 3,910,302 + ECD_03710 0.86 +0.7 3,910,303 - ECD_03710 0.86 +0.4 3,910,303 - ECD_03710 0.86 +0.3 3,910,337 + ECD_03710 0.89 -0.5 3,910,466 + +0.4 3,910,472 + +0.2 3,910,472 + -1.0 3,910,473 - +0.0 3,910,473 - -0.5 3,910,473 - -0.0 3,910,473 - -0.0 3,910,473 - +0.2 3,910,475 + +0.3 3,910,476 - +0.0 3,910,476 - -0.2 3,910,476 - +0.3 3,910,476 - -0.1 3,910,476 - +0.1 3,910,476 - -0.3 3,910,476 - +0.1 3,910,489 - -0.2 3,910,507 - +0.0 3,910,523 + +0.0 3,910,549 - ECD_03711 0.14 +0.6 3,910,589 - ECD_03711 0.26 +0.7 3,910,758 + ECD_03711 0.73 -0.5 3,910,759 - ECD_03711 0.74 +0.6 3,910,759 - ECD_03711 0.74 +0.3 3,910,759 - ECD_03711 0.74 -0.7 3,910,824 + -1.1 3,910,825 - +0.0 3,910,870 + -0.2 3,910,881 + -0.6 3,910,881 + +0.2 3,910,881 + -0.4 3,910,882 - +0.3 3,910,949 + -0.6 3,911,137 + ECD_03712 0.22 -0.8 3,911,137 + ECD_03712 0.22 +0.5 3,911,592 + ECD_03712 0.66 -0.6 3,911,593 - ECD_03712 0.66 +0.8 3,911,611 + ECD_03712 0.68 -0.2 3,911,611 + ECD_03712 0.68 +0.2 3,911,612 - ECD_03712 0.68 +0.4 3,911,711 + ECD_03712 0.78 -1.4 3,911,712 - ECD_03712 0.78 +0.2 3,911,714 + ECD_03712 0.78 -0.6 3,911,740 + ECD_03712 0.80 -0.8 3,911,749 + ECD_03712 0.81 +1.0 3,911,749 + ECD_03712 0.81 -1.2 3,911,749 + ECD_03712 0.81 -1.3 3,911,749 + ECD_03712 0.81 -0.3 3,911,750 - ECD_03712 0.81 -1.2 3,911,750 - ECD_03712 0.81 +0.4 3,911,778 + ECD_03712 0.84 -0.0 3,911,778 + ECD_03712 0.84 -1.5 3,911,778 + ECD_03712 0.84 +0.3 3,911,792 - ECD_03712 0.85 -0.1 3,911,792 - ECD_03712 0.85 -0.9 3,911,795 - ECD_03712 0.86 -1.7 3,911,898 + +1.1 3,911,898 + -0.2 3,911,899 - -0.6 3,912,071 + ECD_03713 0.15 -0.4 3,912,071 + ECD_03713 0.15 -0.0 3,912,072 - ECD_03713 0.15 -0.2 3,912,110 + ECD_03713 0.17 +0.1 3,912,110 + ECD_03713 0.17 +0.4 3,912,119 + ECD_03713 0.18 -0.6 3,912,210 - ECD_03713 0.24 -0.2 3,912,411 - ECD_03713 0.38 -0.1 3,912,579 - ECD_03713 0.49 +1.0 3,912,746 + ECD_03713 0.61 -0.6 3,912,752 + ECD_03713 0.61 +0.0 3,912,752 + ECD_03713 0.61 +0.1 3,912,835 + ECD_03713 0.67 -0.7 3,912,836 - ECD_03713 0.67 -0.1 3,912,933 - ECD_03713 0.73 -0.5
Or see this region's nucleotide sequence