Experiment: Bas28
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03323 and ECD_03324 are separated by 54 nucleotides ECD_03324 and ECD_03325 are separated by 110 nucleotides
ECD_03323: ECD_03323 - UPF0118 family putative transporter, at 3,474,249 to 3,475,298
_03323
ECD_03324: ECD_03324 - 4'-phosphopantetheinyl transferase, at 3,475,353 to 3,475,940
_03324
ECD_03325: ECD_03325 - nickel/heme ABC transporter periplasmic binding protein, at 3,476,051 to 3,477,625
_03325
Position (kb)
3475
3476 Strain fitness (log2 ratio)
-2
-1
0
1 at 3474.361 kb on + strand, within ECD_03323 at 3474.443 kb on + strand, within ECD_03323 at 3474.443 kb on + strand, within ECD_03323 at 3474.443 kb on + strand, within ECD_03323 at 3474.444 kb on - strand, within ECD_03323 at 3474.451 kb on + strand, within ECD_03323 at 3474.524 kb on + strand, within ECD_03323 at 3474.525 kb on - strand, within ECD_03323 at 3474.603 kb on - strand, within ECD_03323 at 3474.650 kb on + strand, within ECD_03323 at 3474.722 kb on - strand, within ECD_03323 at 3474.729 kb on - strand, within ECD_03323 at 3474.779 kb on + strand, within ECD_03323 at 3474.805 kb on + strand, within ECD_03323 at 3474.805 kb on + strand, within ECD_03323 at 3474.818 kb on + strand, within ECD_03323 at 3474.818 kb on + strand, within ECD_03323 at 3474.819 kb on - strand, within ECD_03323 at 3474.931 kb on + strand, within ECD_03323 at 3474.951 kb on + strand, within ECD_03323 at 3474.951 kb on + strand, within ECD_03323 at 3474.951 kb on + strand, within ECD_03323 at 3474.952 kb on - strand, within ECD_03323 at 3474.952 kb on - strand, within ECD_03323 at 3475.031 kb on + strand, within ECD_03323 at 3475.031 kb on + strand, within ECD_03323 at 3475.031 kb on + strand, within ECD_03323 at 3475.031 kb on + strand, within ECD_03323 at 3475.031 kb on + strand, within ECD_03323 at 3475.054 kb on + strand, within ECD_03323 at 3475.085 kb on - strand, within ECD_03323 at 3475.132 kb on + strand, within ECD_03323 at 3475.133 kb on - strand, within ECD_03323 at 3475.147 kb on + strand, within ECD_03323 at 3475.148 kb on - strand, within ECD_03323 at 3475.183 kb on + strand, within ECD_03323 at 3475.184 kb on - strand, within ECD_03323 at 3475.184 kb on - strand, within ECD_03323 at 3475.311 kb on + strand at 3475.311 kb on + strand at 3475.311 kb on + strand at 3475.311 kb on + strand at 3475.312 kb on - strand at 3475.312 kb on - strand at 3475.353 kb on - strand at 3475.356 kb on + strand at 3475.356 kb on + strand at 3475.357 kb on - strand at 3475.357 kb on - strand at 3475.510 kb on - strand, within ECD_03324 at 3475.510 kb on - strand, within ECD_03324 at 3475.510 kb on - strand, within ECD_03324 at 3475.510 kb on - strand, within ECD_03324 at 3475.811 kb on - strand, within ECD_03324 at 3475.822 kb on - strand, within ECD_03324 at 3475.886 kb on + strand at 3475.895 kb on + strand at 3475.896 kb on - strand at 3475.963 kb on + strand at 3475.963 kb on + strand at 3475.963 kb on + strand at 3475.963 kb on + strand at 3475.963 kb on + strand at 3475.963 kb on + strand at 3475.963 kb on + strand at 3475.964 kb on - strand at 3475.964 kb on - strand at 3475.964 kb on - strand at 3475.980 kb on + strand at 3475.981 kb on - strand at 3475.981 kb on - strand at 3475.997 kb on - strand at 3476.001 kb on - strand at 3476.012 kb on - strand at 3476.016 kb on - strand at 3476.016 kb on - strand at 3476.016 kb on - strand at 3476.016 kb on - strand at 3476.034 kb on - strand at 3476.076 kb on + strand at 3476.217 kb on - strand, within ECD_03325 at 3476.338 kb on + strand, within ECD_03325 at 3476.459 kb on - strand, within ECD_03325 at 3476.492 kb on + strand, within ECD_03325 at 3476.493 kb on - strand, within ECD_03325 at 3476.493 kb on - strand, within ECD_03325 at 3476.496 kb on - strand, within ECD_03325 at 3476.585 kb on - strand, within ECD_03325 at 3476.585 kb on - strand, within ECD_03325 at 3476.639 kb on + strand, within ECD_03325 at 3476.667 kb on - strand, within ECD_03325 at 3476.784 kb on + strand, within ECD_03325 at 3476.785 kb on - strand, within ECD_03325 at 3476.787 kb on + strand, within ECD_03325 at 3476.797 kb on + strand, within ECD_03325 at 3476.813 kb on - strand, within ECD_03325 at 3476.828 kb on + strand, within ECD_03325 at 3476.924 kb on - strand, within ECD_03325 at 3476.924 kb on - strand, within ECD_03325
Per-strain Table
Position Strand Gene LocusTag Fraction Bas28 remove 3,474,361 + ECD_03323 0.11 +0.8 3,474,443 + ECD_03323 0.18 -1.4 3,474,443 + ECD_03323 0.18 -0.4 3,474,443 + ECD_03323 0.18 -0.5 3,474,444 - ECD_03323 0.19 +0.2 3,474,451 + ECD_03323 0.19 -0.1 3,474,524 + ECD_03323 0.26 -0.1 3,474,525 - ECD_03323 0.26 +0.7 3,474,603 - ECD_03323 0.34 +0.2 3,474,650 + ECD_03323 0.38 -0.5 3,474,722 - ECD_03323 0.45 -0.2 3,474,729 - ECD_03323 0.46 -0.2 3,474,779 + ECD_03323 0.50 -1.8 3,474,805 + ECD_03323 0.53 +0.8 3,474,805 + ECD_03323 0.53 -0.5 3,474,818 + ECD_03323 0.54 -0.0 3,474,818 + ECD_03323 0.54 +0.2 3,474,819 - ECD_03323 0.54 +0.1 3,474,931 + ECD_03323 0.65 -0.2 3,474,951 + ECD_03323 0.67 -0.6 3,474,951 + ECD_03323 0.67 +1.4 3,474,951 + ECD_03323 0.67 +0.4 3,474,952 - ECD_03323 0.67 +1.2 3,474,952 - ECD_03323 0.67 -0.2 3,475,031 + ECD_03323 0.74 -0.3 3,475,031 + ECD_03323 0.74 +0.1 3,475,031 + ECD_03323 0.74 -0.1 3,475,031 + ECD_03323 0.74 -0.8 3,475,031 + ECD_03323 0.74 -0.9 3,475,054 + ECD_03323 0.77 +0.7 3,475,085 - ECD_03323 0.80 -0.8 3,475,132 + ECD_03323 0.84 -0.5 3,475,133 - ECD_03323 0.84 +0.4 3,475,147 + ECD_03323 0.86 -0.6 3,475,148 - ECD_03323 0.86 -0.5 3,475,183 + ECD_03323 0.89 -0.2 3,475,184 - ECD_03323 0.89 -0.1 3,475,184 - ECD_03323 0.89 -0.5 3,475,311 + +0.1 3,475,311 + +1.0 3,475,311 + +0.1 3,475,311 + +0.2 3,475,312 - +0.3 3,475,312 - -0.3 3,475,353 - +0.6 3,475,356 + -0.7 3,475,356 + -0.3 3,475,357 - -0.2 3,475,357 - -0.1 3,475,510 - ECD_03324 0.27 -0.9 3,475,510 - ECD_03324 0.27 -0.6 3,475,510 - ECD_03324 0.27 -0.6 3,475,510 - ECD_03324 0.27 +0.0 3,475,811 - ECD_03324 0.78 -0.8 3,475,822 - ECD_03324 0.80 -0.2 3,475,886 + -1.4 3,475,895 + -0.2 3,475,896 - -0.1 3,475,963 + -0.6 3,475,963 + -1.6 3,475,963 + -0.4 3,475,963 + +0.3 3,475,963 + +0.4 3,475,963 + +0.1 3,475,963 + -0.1 3,475,964 - -0.3 3,475,964 - +0.4 3,475,964 - +0.6 3,475,980 + -0.2 3,475,981 - +0.1 3,475,981 - +0.7 3,475,997 - -0.2 3,476,001 - +0.1 3,476,012 - +0.3 3,476,016 - +0.3 3,476,016 - +0.3 3,476,016 - -0.2 3,476,016 - +0.3 3,476,034 - +0.1 3,476,076 + -0.9 3,476,217 - ECD_03325 0.11 -0.3 3,476,338 + ECD_03325 0.18 -0.3 3,476,459 - ECD_03325 0.26 +0.1 3,476,492 + ECD_03325 0.28 -0.0 3,476,493 - ECD_03325 0.28 -0.0 3,476,493 - ECD_03325 0.28 +0.1 3,476,496 - ECD_03325 0.28 -0.5 3,476,585 - ECD_03325 0.34 -0.1 3,476,585 - ECD_03325 0.34 +0.2 3,476,639 + ECD_03325 0.37 +0.4 3,476,667 - ECD_03325 0.39 -0.1 3,476,784 + ECD_03325 0.47 +0.1 3,476,785 - ECD_03325 0.47 -0.0 3,476,787 + ECD_03325 0.47 +0.3 3,476,797 + ECD_03325 0.47 -0.1 3,476,813 - ECD_03325 0.48 +0.8 3,476,828 + ECD_03325 0.49 +1.0 3,476,924 - ECD_03325 0.55 -0.2 3,476,924 - ECD_03325 0.55 -0.0
Or see this region's nucleotide sequence