Experiment: Bas28
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02554 and ECD_02555 are separated by 3 nucleotides ECD_02555 and ECD_02556 are separated by 105 nucleotides ECD_02556 and ECD_02557 are separated by 66 nucleotides ECD_02557 and ECD_02558 overlap by 8 nucleotides
ECD_02554: ECD_02554 - glucitol/sorbitol-specific enzyme IIA component of PTS, at 2,667,328 to 2,667,699
_02554
ECD_02555: ECD_02555 - sorbitol-6-phosphate dehydrogenase, at 2,667,703 to 2,668,482
_02555
ECD_02556: ECD_02556 - sorbitol-responsive srl operon transcriptional activator, at 2,668,588 to 2,668,947
_02556
ECD_02557: ECD_02557 - sorbitol-inducible srl operon transcriptional repressor, at 2,669,014 to 2,669,787
_02557
ECD_02558: ECD_02558 - D-arabinose 5-phosphate isomerase, at 2,669,780 to 2,670,745
_02558
Position (kb)
2668
2669 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2667.744 kb on - strand at 2667.841 kb on - strand, within ECD_02555 at 2667.850 kb on + strand, within ECD_02555 at 2667.851 kb on - strand, within ECD_02555 at 2667.868 kb on + strand, within ECD_02555 at 2667.868 kb on + strand, within ECD_02555 at 2667.869 kb on - strand, within ECD_02555 at 2667.962 kb on - strand, within ECD_02555 at 2667.962 kb on - strand, within ECD_02555 at 2667.962 kb on - strand, within ECD_02555 at 2667.962 kb on - strand, within ECD_02555 at 2668.048 kb on + strand, within ECD_02555 at 2668.048 kb on + strand, within ECD_02555 at 2668.225 kb on + strand, within ECD_02555 at 2668.233 kb on + strand, within ECD_02555 at 2668.300 kb on + strand, within ECD_02555 at 2668.300 kb on + strand, within ECD_02555 at 2668.300 kb on + strand, within ECD_02555 at 2668.300 kb on + strand, within ECD_02555 at 2668.300 kb on + strand, within ECD_02555 at 2668.300 kb on + strand, within ECD_02555 at 2668.342 kb on + strand, within ECD_02555 at 2668.342 kb on + strand, within ECD_02555 at 2668.342 kb on + strand, within ECD_02555 at 2668.342 kb on + strand, within ECD_02555 at 2668.343 kb on - strand, within ECD_02555 at 2668.345 kb on + strand, within ECD_02555 at 2668.345 kb on + strand, within ECD_02555 at 2668.345 kb on + strand, within ECD_02555 at 2668.345 kb on + strand, within ECD_02555 at 2668.345 kb on + strand, within ECD_02555 at 2668.345 kb on + strand, within ECD_02555 at 2668.345 kb on + strand, within ECD_02555 at 2668.345 kb on + strand, within ECD_02555 at 2668.345 kb on + strand, within ECD_02555 at 2668.345 kb on + strand, within ECD_02555 at 2668.345 kb on + strand, within ECD_02555 at 2668.345 kb on + strand, within ECD_02555 at 2668.345 kb on + strand, within ECD_02555 at 2668.345 kb on + strand, within ECD_02555 at 2668.345 kb on + strand, within ECD_02555 at 2668.345 kb on + strand, within ECD_02555 at 2668.345 kb on + strand, within ECD_02555 at 2668.345 kb on + strand, within ECD_02555 at 2668.345 kb on + strand, within ECD_02555 at 2668.345 kb on + strand, within ECD_02555 at 2668.346 kb on - strand, within ECD_02555 at 2668.346 kb on - strand, within ECD_02555 at 2668.346 kb on - strand, within ECD_02555 at 2668.346 kb on - strand, within ECD_02555 at 2668.346 kb on - strand, within ECD_02555 at 2668.346 kb on - strand, within ECD_02555 at 2668.346 kb on - strand, within ECD_02555 at 2668.346 kb on - strand, within ECD_02555 at 2668.346 kb on - strand, within ECD_02555 at 2668.346 kb on - strand, within ECD_02555 at 2668.358 kb on + strand, within ECD_02555 at 2668.358 kb on + strand, within ECD_02555 at 2668.398 kb on + strand, within ECD_02555 at 2668.398 kb on + strand, within ECD_02555 at 2668.398 kb on + strand, within ECD_02555 at 2668.398 kb on + strand, within ECD_02555 at 2668.398 kb on + strand, within ECD_02555 at 2668.398 kb on + strand, within ECD_02555 at 2668.398 kb on + strand, within ECD_02555 at 2668.398 kb on + strand, within ECD_02555 at 2668.399 kb on - strand, within ECD_02555 at 2668.399 kb on - strand, within ECD_02555 at 2668.411 kb on + strand at 2668.411 kb on + strand at 2668.411 kb on + strand at 2668.411 kb on + strand at 2668.411 kb on + strand at 2668.412 kb on - strand at 2668.412 kb on - strand at 2668.422 kb on + strand at 2668.423 kb on - strand at 2668.432 kb on + strand at 2668.432 kb on + strand at 2668.433 kb on - strand at 2668.433 kb on - strand at 2668.501 kb on + strand at 2668.519 kb on + strand at 2668.522 kb on + strand at 2668.522 kb on + strand at 2668.522 kb on + strand at 2668.522 kb on + strand at 2668.522 kb on + strand at 2668.522 kb on + strand at 2668.522 kb on + strand at 2668.522 kb on + strand at 2668.522 kb on + strand at 2668.522 kb on + strand at 2668.522 kb on + strand at 2668.522 kb on + strand at 2668.522 kb on + strand at 2668.522 kb on + strand at 2668.522 kb on + strand at 2668.522 kb on + strand at 2668.554 kb on + strand at 2668.554 kb on + strand at 2668.555 kb on - strand at 2668.555 kb on - strand at 2668.571 kb on + strand at 2668.571 kb on + strand at 2668.571 kb on + strand at 2668.571 kb on + strand at 2668.571 kb on + strand at 2668.571 kb on + strand at 2668.572 kb on - strand at 2668.669 kb on - strand, within ECD_02556 at 2668.688 kb on + strand, within ECD_02556 at 2668.688 kb on + strand, within ECD_02556 at 2668.688 kb on + strand, within ECD_02556 at 2668.689 kb on - strand, within ECD_02556 at 2668.689 kb on - strand, within ECD_02556 at 2668.689 kb on - strand, within ECD_02556 at 2668.735 kb on - strand, within ECD_02556 at 2668.797 kb on + strand, within ECD_02556 at 2668.869 kb on - strand, within ECD_02556 at 2668.916 kb on + strand at 2668.917 kb on - strand at 2668.963 kb on + strand at 2668.963 kb on + strand at 2668.963 kb on + strand at 2668.963 kb on + strand at 2668.963 kb on + strand at 2668.964 kb on - strand at 2668.964 kb on - strand at 2668.979 kb on + strand at 2668.994 kb on + strand at 2669.050 kb on + strand at 2669.050 kb on + strand at 2669.050 kb on + strand at 2669.050 kb on + strand at 2669.050 kb on + strand at 2669.067 kb on + strand at 2669.095 kb on + strand, within ECD_02557 at 2669.095 kb on + strand, within ECD_02557 at 2669.095 kb on + strand, within ECD_02557 at 2669.166 kb on + strand, within ECD_02557 at 2669.166 kb on + strand, within ECD_02557 at 2669.166 kb on + strand, within ECD_02557 at 2669.166 kb on + strand, within ECD_02557 at 2669.166 kb on + strand, within ECD_02557 at 2669.170 kb on + strand, within ECD_02557 at 2669.170 kb on + strand, within ECD_02557 at 2669.170 kb on + strand, within ECD_02557 at 2669.170 kb on + strand, within ECD_02557 at 2669.170 kb on + strand, within ECD_02557 at 2669.190 kb on + strand, within ECD_02557 at 2669.190 kb on + strand, within ECD_02557 at 2669.190 kb on + strand, within ECD_02557 at 2669.191 kb on - strand, within ECD_02557 at 2669.212 kb on - strand, within ECD_02557 at 2669.220 kb on + strand, within ECD_02557 at 2669.220 kb on + strand, within ECD_02557 at 2669.277 kb on + strand, within ECD_02557 at 2669.277 kb on + strand, within ECD_02557 at 2669.352 kb on + strand, within ECD_02557 at 2669.352 kb on + strand, within ECD_02557 at 2669.352 kb on + strand, within ECD_02557 at 2669.355 kb on + strand, within ECD_02557 at 2669.355 kb on + strand, within ECD_02557 at 2669.355 kb on + strand, within ECD_02557 at 2669.355 kb on + strand, within ECD_02557 at 2669.355 kb on + strand, within ECD_02557 at 2669.355 kb on + strand, within ECD_02557 at 2669.355 kb on + strand, within ECD_02557 at 2669.385 kb on + strand, within ECD_02557 at 2669.385 kb on + strand, within ECD_02557 at 2669.399 kb on + strand, within ECD_02557 at 2669.424 kb on + strand, within ECD_02557 at 2669.424 kb on + strand, within ECD_02557 at 2669.424 kb on + strand, within ECD_02557 at 2669.425 kb on - strand, within ECD_02557 at 2669.578 kb on + strand, within ECD_02557 at 2669.578 kb on + strand, within ECD_02557 at 2669.578 kb on + strand, within ECD_02557 at 2669.578 kb on + strand, within ECD_02557 at 2669.578 kb on + strand, within ECD_02557 at 2669.578 kb on + strand, within ECD_02557 at 2669.579 kb on - strand, within ECD_02557 at 2669.581 kb on - strand, within ECD_02557 at 2669.589 kb on + strand, within ECD_02557 at 2669.666 kb on + strand, within ECD_02557 at 2669.666 kb on + strand, within ECD_02557 at 2669.666 kb on + strand, within ECD_02557 at 2669.666 kb on + strand, within ECD_02557 at 2669.666 kb on + strand, within ECD_02557 at 2669.666 kb on + strand, within ECD_02557 at 2669.666 kb on + strand, within ECD_02557 at 2669.666 kb on + strand, within ECD_02557 at 2669.666 kb on + strand, within ECD_02557 at 2669.666 kb on + strand, within ECD_02557 at 2669.666 kb on + strand, within ECD_02557 at 2669.666 kb on + strand, within ECD_02557 at 2669.666 kb on + strand, within ECD_02557 at 2669.666 kb on + strand, within ECD_02557 at 2669.666 kb on + strand, within ECD_02557 at 2669.666 kb on + strand, within ECD_02557 at 2669.667 kb on - strand, within ECD_02557 at 2669.712 kb on + strand at 2669.793 kb on + strand at 2669.793 kb on + strand at 2669.793 kb on + strand at 2669.793 kb on + strand at 2669.818 kb on - strand at 2669.887 kb on + strand, within ECD_02558
Per-strain Table
Position Strand Gene LocusTag Fraction Bas28 remove 2,667,744 - +0.9 2,667,841 - ECD_02555 0.18 +1.7 2,667,850 + ECD_02555 0.19 -1.3 2,667,851 - ECD_02555 0.19 -0.2 2,667,868 + ECD_02555 0.21 +0.9 2,667,868 + ECD_02555 0.21 +0.9 2,667,869 - ECD_02555 0.21 -0.7 2,667,962 - ECD_02555 0.33 -3.7 2,667,962 - ECD_02555 0.33 -0.1 2,667,962 - ECD_02555 0.33 +0.7 2,667,962 - ECD_02555 0.33 +0.9 2,668,048 + ECD_02555 0.44 +0.7 2,668,048 + ECD_02555 0.44 -0.5 2,668,225 + ECD_02555 0.67 -0.5 2,668,233 + ECD_02555 0.68 -0.2 2,668,300 + ECD_02555 0.77 +0.4 2,668,300 + ECD_02555 0.77 -0.0 2,668,300 + ECD_02555 0.77 +0.2 2,668,300 + ECD_02555 0.77 -0.0 2,668,300 + ECD_02555 0.77 +0.4 2,668,300 + ECD_02555 0.77 +0.6 2,668,342 + ECD_02555 0.82 +1.9 2,668,342 + ECD_02555 0.82 +0.6 2,668,342 + ECD_02555 0.82 +1.3 2,668,342 + ECD_02555 0.82 -0.4 2,668,343 - ECD_02555 0.82 +0.7 2,668,345 + ECD_02555 0.82 -0.2 2,668,345 + ECD_02555 0.82 -0.5 2,668,345 + ECD_02555 0.82 +0.2 2,668,345 + ECD_02555 0.82 +0.2 2,668,345 + ECD_02555 0.82 -0.7 2,668,345 + ECD_02555 0.82 +0.9 2,668,345 + ECD_02555 0.82 -0.3 2,668,345 + ECD_02555 0.82 -0.5 2,668,345 + ECD_02555 0.82 +0.9 2,668,345 + ECD_02555 0.82 +0.6 2,668,345 + ECD_02555 0.82 -0.5 2,668,345 + ECD_02555 0.82 -1.2 2,668,345 + ECD_02555 0.82 -0.3 2,668,345 + ECD_02555 0.82 -0.2 2,668,345 + ECD_02555 0.82 -0.2 2,668,345 + ECD_02555 0.82 -1.1 2,668,345 + ECD_02555 0.82 -0.3 2,668,345 + ECD_02555 0.82 -0.1 2,668,345 + ECD_02555 0.82 -0.1 2,668,345 + ECD_02555 0.82 -0.2 2,668,346 - ECD_02555 0.82 +0.5 2,668,346 - ECD_02555 0.82 +0.8 2,668,346 - ECD_02555 0.82 +0.1 2,668,346 - ECD_02555 0.82 -0.5 2,668,346 - ECD_02555 0.82 -0.6 2,668,346 - ECD_02555 0.82 -0.2 2,668,346 - ECD_02555 0.82 -0.5 2,668,346 - ECD_02555 0.82 +0.0 2,668,346 - ECD_02555 0.82 -0.1 2,668,346 - ECD_02555 0.82 -0.8 2,668,358 + ECD_02555 0.84 +0.7 2,668,358 + ECD_02555 0.84 -0.4 2,668,398 + ECD_02555 0.89 +1.6 2,668,398 + ECD_02555 0.89 -0.1 2,668,398 + ECD_02555 0.89 -0.1 2,668,398 + ECD_02555 0.89 +0.0 2,668,398 + ECD_02555 0.89 +0.5 2,668,398 + ECD_02555 0.89 +1.4 2,668,398 + ECD_02555 0.89 +0.8 2,668,398 + ECD_02555 0.89 +0.9 2,668,399 - ECD_02555 0.89 +0.3 2,668,399 - ECD_02555 0.89 -0.9 2,668,411 + +0.4 2,668,411 + -0.1 2,668,411 + +0.1 2,668,411 + +0.6 2,668,411 + +0.1 2,668,412 - -0.1 2,668,412 - -1.4 2,668,422 + -0.1 2,668,423 - +0.7 2,668,432 + +0.6 2,668,432 + +0.2 2,668,433 - -1.2 2,668,433 - -0.9 2,668,501 + +0.6 2,668,519 + -0.5 2,668,522 + +0.8 2,668,522 + -0.2 2,668,522 + +0.3 2,668,522 + -0.2 2,668,522 + -1.5 2,668,522 + -0.5 2,668,522 + +0.3 2,668,522 + -0.2 2,668,522 + +0.3 2,668,522 + +0.1 2,668,522 + +0.3 2,668,522 + +1.1 2,668,522 + -1.3 2,668,522 + -0.6 2,668,522 + -1.0 2,668,522 + +0.6 2,668,554 + -0.5 2,668,554 + -0.3 2,668,555 - -0.9 2,668,555 - -0.1 2,668,571 + -0.1 2,668,571 + -0.1 2,668,571 + +0.5 2,668,571 + +0.3 2,668,571 + -0.7 2,668,571 + +0.3 2,668,572 - -1.3 2,668,669 - ECD_02556 0.23 -0.9 2,668,688 + ECD_02556 0.28 -0.4 2,668,688 + ECD_02556 0.28 -0.5 2,668,688 + ECD_02556 0.28 +0.9 2,668,689 - ECD_02556 0.28 -0.1 2,668,689 - ECD_02556 0.28 +0.4 2,668,689 - ECD_02556 0.28 -0.5 2,668,735 - ECD_02556 0.41 +0.6 2,668,797 + ECD_02556 0.58 +1.2 2,668,869 - ECD_02556 0.78 -0.1 2,668,916 + +1.4 2,668,917 - -1.3 2,668,963 + +0.4 2,668,963 + -0.6 2,668,963 + +0.2 2,668,963 + +0.2 2,668,963 + -0.4 2,668,964 - -0.4 2,668,964 - -0.4 2,668,979 + -0.4 2,668,994 + -0.6 2,669,050 + -0.6 2,669,050 + -1.6 2,669,050 + -0.8 2,669,050 + -1.5 2,669,050 + -1.5 2,669,067 + -1.5 2,669,095 + ECD_02557 0.10 -2.8 2,669,095 + ECD_02557 0.10 -1.0 2,669,095 + ECD_02557 0.10 +0.0 2,669,166 + ECD_02557 0.20 -1.9 2,669,166 + ECD_02557 0.20 -0.7 2,669,166 + ECD_02557 0.20 -0.8 2,669,166 + ECD_02557 0.20 -1.7 2,669,166 + ECD_02557 0.20 -1.6 2,669,170 + ECD_02557 0.20 -1.0 2,669,170 + ECD_02557 0.20 -1.0 2,669,170 + ECD_02557 0.20 -1.0 2,669,170 + ECD_02557 0.20 -1.0 2,669,170 + ECD_02557 0.20 -1.9 2,669,190 + ECD_02557 0.23 -0.5 2,669,190 + ECD_02557 0.23 -1.3 2,669,190 + ECD_02557 0.23 -1.2 2,669,191 - ECD_02557 0.23 +0.8 2,669,212 - ECD_02557 0.26 -0.5 2,669,220 + ECD_02557 0.27 -1.8 2,669,220 + ECD_02557 0.27 -2.1 2,669,277 + ECD_02557 0.34 -0.8 2,669,277 + ECD_02557 0.34 -1.5 2,669,352 + ECD_02557 0.44 -1.1 2,669,352 + ECD_02557 0.44 -0.5 2,669,352 + ECD_02557 0.44 -1.4 2,669,355 + ECD_02557 0.44 -1.6 2,669,355 + ECD_02557 0.44 -2.3 2,669,355 + ECD_02557 0.44 +0.7 2,669,355 + ECD_02557 0.44 -0.7 2,669,355 + ECD_02557 0.44 -1.5 2,669,355 + ECD_02557 0.44 -1.1 2,669,355 + ECD_02557 0.44 -0.8 2,669,385 + ECD_02557 0.48 -2.4 2,669,385 + ECD_02557 0.48 -1.9 2,669,399 + ECD_02557 0.50 -1.6 2,669,424 + ECD_02557 0.53 -0.6 2,669,424 + ECD_02557 0.53 -1.4 2,669,424 + ECD_02557 0.53 -1.0 2,669,425 - ECD_02557 0.53 -1.0 2,669,578 + ECD_02557 0.73 -1.4 2,669,578 + ECD_02557 0.73 -3.2 2,669,578 + ECD_02557 0.73 -0.5 2,669,578 + ECD_02557 0.73 -2.8 2,669,578 + ECD_02557 0.73 -2.3 2,669,578 + ECD_02557 0.73 -0.5 2,669,579 - ECD_02557 0.73 -0.5 2,669,581 - ECD_02557 0.73 -2.1 2,669,589 + ECD_02557 0.74 -0.7 2,669,666 + ECD_02557 0.84 -0.3 2,669,666 + ECD_02557 0.84 -0.9 2,669,666 + ECD_02557 0.84 -1.3 2,669,666 + ECD_02557 0.84 -1.1 2,669,666 + ECD_02557 0.84 -1.2 2,669,666 + ECD_02557 0.84 -1.4 2,669,666 + ECD_02557 0.84 -0.2 2,669,666 + ECD_02557 0.84 -0.3 2,669,666 + ECD_02557 0.84 -0.9 2,669,666 + ECD_02557 0.84 -1.5 2,669,666 + ECD_02557 0.84 -1.3 2,669,666 + ECD_02557 0.84 -1.4 2,669,666 + ECD_02557 0.84 -2.1 2,669,666 + ECD_02557 0.84 -1.4 2,669,666 + ECD_02557 0.84 -1.4 2,669,666 + ECD_02557 0.84 -1.2 2,669,667 - ECD_02557 0.84 -1.5 2,669,712 + +0.2 2,669,793 + +0.1 2,669,793 + +0.5 2,669,793 + +0.2 2,669,793 + -0.7 2,669,818 - -0.2 2,669,887 + ECD_02558 0.11 -0.5
Or see this region's nucleotide sequence