Strain Fitness in Escherichia coli BL21 around ECD_01235

Experiment: Bas28

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01234 and ECD_01235 overlap by 1 nucleotidesECD_01235 and ECD_01236 are separated by 11 nucleotides ECD_01234: ECD_01234 - tryptophan synthase, alpha subunit, at 1,302,008 to 1,302,814 _01234 ECD_01235: ECD_01235 - tryptophan synthase, beta subunit, at 1,302,814 to 1,304,007 _01235 ECD_01236: ECD_01236 - indole-3-glycerolphosphate synthetase and N-(5-phosphoribosyl)anthranilate isomerase, at 1,304,019 to 1,305,377 _01236 Position (kb) 1302 1303 1304 1305Strain fitness (log2 ratio) -1 0 1at 1302.082 kb on + strandat 1302.511 kb on - strand, within ECD_01234at 1302.661 kb on + strand, within ECD_01234at 1303.449 kb on + strand, within ECD_01235at 1303.451 kb on + strand, within ECD_01235at 1303.452 kb on - strand, within ECD_01235at 1303.611 kb on - strand, within ECD_01235at 1303.611 kb on - strand, within ECD_01235at 1303.788 kb on - strand, within ECD_01235at 1303.813 kb on - strand, within ECD_01235at 1303.854 kb on - strand, within ECD_01235at 1303.961 kb on + strandat 1303.962 kb on - strandat 1303.962 kb on - strandat 1303.962 kb on - strandat 1303.962 kb on - strandat 1304.145 kb on - strandat 1304.256 kb on - strand, within ECD_01236at 1304.357 kb on - strand, within ECD_01236at 1304.357 kb on - strand, within ECD_01236at 1304.357 kb on - strand, within ECD_01236at 1304.409 kb on - strand, within ECD_01236at 1304.546 kb on - strand, within ECD_01236at 1304.564 kb on - strand, within ECD_01236at 1304.724 kb on - strand, within ECD_01236at 1304.724 kb on - strand, within ECD_01236at 1304.973 kb on + strand, within ECD_01236at 1304.973 kb on + strand, within ECD_01236at 1304.974 kb on - strand, within ECD_01236at 1304.993 kb on - strand, within ECD_01236

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas28
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1,302,082 + +0.5
1,302,511 - ECD_01234 0.62 -0.2
1,302,661 + ECD_01234 0.81 +0.1
1,303,449 + ECD_01235 0.53 +1.4
1,303,451 + ECD_01235 0.53 -0.1
1,303,452 - ECD_01235 0.53 +0.8
1,303,611 - ECD_01235 0.67 +0.5
1,303,611 - ECD_01235 0.67 +1.0
1,303,788 - ECD_01235 0.82 +0.7
1,303,813 - ECD_01235 0.84 -1.0
1,303,854 - ECD_01235 0.87 +1.4
1,303,961 + -0.1
1,303,962 - +0.1
1,303,962 - -0.7
1,303,962 - +0.1
1,303,962 - +1.1
1,304,145 - +0.0
1,304,256 - ECD_01236 0.17 -0.0
1,304,357 - ECD_01236 0.25 -0.1
1,304,357 - ECD_01236 0.25 -0.9
1,304,357 - ECD_01236 0.25 -1.4
1,304,409 - ECD_01236 0.29 -0.2
1,304,546 - ECD_01236 0.39 +0.6
1,304,564 - ECD_01236 0.40 +0.1
1,304,724 - ECD_01236 0.52 +0.1
1,304,724 - ECD_01236 0.52 +0.4
1,304,973 + ECD_01236 0.70 +1.1
1,304,973 + ECD_01236 0.70 -0.6
1,304,974 - ECD_01236 0.70 -0.3
1,304,993 - ECD_01236 0.72 +1.6

Or see this region's nucleotide sequence