Experiment: Bas28
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00455 and ECD_00456 are separated by 77 nucleotides ECD_00456 and ECD_00457 are separated by 89 nucleotides ECD_00457 and ECD_00458 are separated by 12 nucleotides ECD_00458 and ECD_00459 are separated by 99 nucleotides
ECD_00455: ECD_00455 - ureidoglycolate lyase, releasing urea, at 501,596 to 502,078
_00455
ECD_00456: ECD_00456 - glyoxylate-inducible transcriptional repressor of all and gcl operons, at 502,156 to 502,971
_00456
ECD_00457: ECD_00457 - glyoxylate carboligase, at 503,061 to 504,842
_00457
ECD_00458: ECD_00458 - hydroxypyruvate isomerase, at 504,855 to 505,631
_00458
ECD_00459: ECD_00459 - tartronate semialdehyde reductase, NADH-dependent, at 505,731 to 506,609
_00459
Position (kb) 503
504
505 Strain fitness (log2 ratio) -2
-1
0
1 at 502.099 kb on - strand at 502.108 kb on + strand at 502.109 kb on - strand at 502.123 kb on + strand at 502.151 kb on + strand at 502.151 kb on + strand at 502.152 kb on - strand at 502.155 kb on + strand at 502.252 kb on + strand, within ECD_00456 at 502.395 kb on + strand, within ECD_00456 at 502.395 kb on + strand, within ECD_00456 at 502.397 kb on + strand, within ECD_00456 at 502.397 kb on + strand, within ECD_00456 at 502.397 kb on + strand, within ECD_00456 at 502.397 kb on + strand, within ECD_00456 at 502.403 kb on + strand, within ECD_00456 at 502.403 kb on + strand, within ECD_00456 at 502.403 kb on + strand, within ECD_00456 at 502.403 kb on + strand, within ECD_00456 at 502.403 kb on + strand, within ECD_00456 at 502.403 kb on + strand, within ECD_00456 at 502.403 kb on + strand, within ECD_00456 at 502.403 kb on + strand, within ECD_00456 at 502.429 kb on + strand, within ECD_00456 at 502.429 kb on + strand, within ECD_00456 at 502.430 kb on - strand, within ECD_00456 at 502.487 kb on + strand, within ECD_00456 at 502.538 kb on + strand, within ECD_00456 at 502.541 kb on + strand, within ECD_00456 at 502.541 kb on + strand, within ECD_00456 at 502.553 kb on + strand, within ECD_00456 at 502.560 kb on + strand, within ECD_00456 at 502.560 kb on + strand, within ECD_00456 at 502.707 kb on + strand, within ECD_00456 at 502.707 kb on + strand, within ECD_00456 at 502.708 kb on - strand, within ECD_00456 at 502.719 kb on + strand, within ECD_00456 at 502.765 kb on + strand, within ECD_00456 at 502.776 kb on + strand, within ECD_00456 at 502.822 kb on + strand, within ECD_00456 at 502.822 kb on + strand, within ECD_00456 at 502.970 kb on - strand at 503.094 kb on + strand at 503.094 kb on + strand at 503.094 kb on + strand at 503.094 kb on + strand at 503.114 kb on + strand at 503.161 kb on - strand at 503.242 kb on - strand, within ECD_00457 at 503.243 kb on + strand, within ECD_00457 at 503.273 kb on - strand, within ECD_00457 at 503.273 kb on - strand, within ECD_00457 at 503.410 kb on + strand, within ECD_00457 at 503.410 kb on + strand, within ECD_00457 at 503.592 kb on + strand, within ECD_00457 at 503.593 kb on - strand, within ECD_00457 at 503.593 kb on - strand, within ECD_00457 at 503.593 kb on - strand, within ECD_00457 at 503.659 kb on + strand, within ECD_00457 at 503.701 kb on + strand, within ECD_00457 at 503.705 kb on + strand, within ECD_00457 at 503.960 kb on + strand, within ECD_00457 at 503.960 kb on + strand, within ECD_00457 at 503.961 kb on - strand, within ECD_00457 at 504.027 kb on - strand, within ECD_00457 at 504.186 kb on + strand, within ECD_00457 at 504.457 kb on - strand, within ECD_00457 at 504.483 kb on + strand, within ECD_00457 at 504.614 kb on - strand, within ECD_00457 at 504.620 kb on + strand, within ECD_00457 at 504.720 kb on - strand at 505.807 kb on + strand at 505.807 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas28 remove 502,099 - +0.3 502,108 + -0.5 502,109 - +1.1 502,123 + -0.5 502,151 + -0.2 502,151 + -0.1 502,152 - -0.5 502,155 + -0.8 502,252 + ECD_00456 0.12 -2.6 502,395 + ECD_00456 0.29 -0.5 502,395 + ECD_00456 0.29 +0.8 502,397 + ECD_00456 0.30 -0.4 502,397 + ECD_00456 0.30 +0.7 502,397 + ECD_00456 0.30 +0.0 502,397 + ECD_00456 0.30 -0.3 502,403 + ECD_00456 0.30 -0.0 502,403 + ECD_00456 0.30 -0.4 502,403 + ECD_00456 0.30 -0.2 502,403 + ECD_00456 0.30 +0.3 502,403 + ECD_00456 0.30 -1.0 502,403 + ECD_00456 0.30 +0.3 502,403 + ECD_00456 0.30 -1.0 502,403 + ECD_00456 0.30 +0.6 502,429 + ECD_00456 0.33 +0.0 502,429 + ECD_00456 0.33 +0.2 502,430 - ECD_00456 0.34 -0.2 502,487 + ECD_00456 0.41 +0.8 502,538 + ECD_00456 0.47 +0.7 502,541 + ECD_00456 0.47 +0.3 502,541 + ECD_00456 0.47 -0.6 502,553 + ECD_00456 0.49 +0.1 502,560 + ECD_00456 0.50 -0.3 502,560 + ECD_00456 0.50 -0.2 502,707 + ECD_00456 0.68 -0.3 502,707 + ECD_00456 0.68 +0.4 502,708 - ECD_00456 0.68 -0.3 502,719 + ECD_00456 0.69 -0.1 502,765 + ECD_00456 0.75 -0.7 502,776 + ECD_00456 0.76 -0.8 502,822 + ECD_00456 0.82 -0.7 502,822 + ECD_00456 0.82 +0.5 502,970 - -0.5 503,094 + -0.1 503,094 + -0.0 503,094 + -0.3 503,094 + +1.2 503,114 + +1.0 503,161 - +1.4 503,242 - ECD_00457 0.10 -0.8 503,243 + ECD_00457 0.10 +0.0 503,273 - ECD_00457 0.12 +0.4 503,273 - ECD_00457 0.12 -1.5 503,410 + ECD_00457 0.20 +0.8 503,410 + ECD_00457 0.20 -0.9 503,592 + ECD_00457 0.30 -0.4 503,593 - ECD_00457 0.30 +1.3 503,593 - ECD_00457 0.30 -0.1 503,593 - ECD_00457 0.30 -0.3 503,659 + ECD_00457 0.34 -0.2 503,701 + ECD_00457 0.36 +0.7 503,705 + ECD_00457 0.36 +0.0 503,960 + ECD_00457 0.50 +1.6 503,960 + ECD_00457 0.50 -1.2 503,961 - ECD_00457 0.51 +0.6 504,027 - ECD_00457 0.54 -0.5 504,186 + ECD_00457 0.63 +0.2 504,457 - ECD_00457 0.78 +0.2 504,483 + ECD_00457 0.80 +0.1 504,614 - ECD_00457 0.87 -0.9 504,620 + ECD_00457 0.87 +0.0 504,720 - -1.0 505,807 + -0.4 505,807 + -0.5
Or see this region's nucleotide sequence