Strain Fitness in Escherichia coli BL21 around ECD_00306

Experiment: Bas28

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_00304 and ECD_00305 overlap by 4 nucleotidesECD_00305 and ECD_00306 overlap by 4 nucleotidesECD_00306 and ECD_00307 are separated by 377 nucleotides ECD_00304: ECD_00304 - 2-keto-4-pentenoate hydratase, at 341,650 to 342,459 _00304 ECD_00305: ECD_00305 - acetaldehyde-CoA dehydrogenase II, NAD-binding, at 342,456 to 343,406 _00305 ECD_00306: ECD_00306 - 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase, class I, at 343,403 to 344,416 _00306 ECD_00307: ECD_00307 - 3-hydroxyphenylpropionic transporter, at 344,794 to 346,005 _00307 Position (kb) 343 344 345Strain fitness (log2 ratio) -2 -1 0 1at 342.404 kb on + strandat 342.404 kb on + strandat 342.404 kb on + strandat 342.404 kb on + strandat 342.405 kb on - strandat 342.603 kb on - strand, within ECD_00305at 342.676 kb on + strand, within ECD_00305at 342.676 kb on + strand, within ECD_00305at 342.676 kb on + strand, within ECD_00305at 342.926 kb on + strand, within ECD_00305at 342.935 kb on + strand, within ECD_00305at 343.086 kb on + strand, within ECD_00305at 343.086 kb on + strand, within ECD_00305at 343.086 kb on + strand, within ECD_00305at 343.087 kb on - strand, within ECD_00305at 343.087 kb on - strand, within ECD_00305at 343.087 kb on - strand, within ECD_00305at 343.090 kb on + strand, within ECD_00305at 343.090 kb on + strand, within ECD_00305at 343.091 kb on - strand, within ECD_00305at 343.091 kb on - strand, within ECD_00305at 343.161 kb on + strand, within ECD_00305at 343.162 kb on - strand, within ECD_00305at 343.162 kb on - strand, within ECD_00305at 343.162 kb on - strand, within ECD_00305at 343.162 kb on - strand, within ECD_00305at 343.166 kb on - strand, within ECD_00305at 343.311 kb on + strand, within ECD_00305at 343.331 kb on + strandat 343.421 kb on + strandat 343.573 kb on + strand, within ECD_00306at 343.574 kb on - strand, within ECD_00306at 343.577 kb on + strand, within ECD_00306at 343.578 kb on - strand, within ECD_00306at 343.769 kb on - strand, within ECD_00306at 343.826 kb on - strand, within ECD_00306at 343.888 kb on + strand, within ECD_00306at 343.888 kb on + strand, within ECD_00306at 343.892 kb on + strand, within ECD_00306at 343.892 kb on + strand, within ECD_00306at 343.892 kb on + strand, within ECD_00306at 344.165 kb on + strand, within ECD_00306at 344.327 kb on - strandat 344.374 kb on + strandat 344.444 kb on + strandat 344.444 kb on + strandat 344.699 kb on - strandat 344.726 kb on + strandat 344.752 kb on + strandat 344.752 kb on + strandat 344.793 kb on + strandat 344.958 kb on - strand, within ECD_00307at 344.962 kb on - strand, within ECD_00307at 345.031 kb on - strand, within ECD_00307at 345.226 kb on + strand, within ECD_00307at 345.227 kb on - strand, within ECD_00307at 345.287 kb on + strand, within ECD_00307at 345.287 kb on + strand, within ECD_00307at 345.416 kb on + strand, within ECD_00307

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas28
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342,404 + -0.6
342,404 + -0.4
342,404 + -0.1
342,404 + -0.1
342,405 - -1.1
342,603 - ECD_00305 0.15 -0.2
342,676 + ECD_00305 0.23 +0.8
342,676 + ECD_00305 0.23 +0.3
342,676 + ECD_00305 0.23 -0.8
342,926 + ECD_00305 0.49 -0.2
342,935 + ECD_00305 0.50 -0.0
343,086 + ECD_00305 0.66 +0.2
343,086 + ECD_00305 0.66 +0.8
343,086 + ECD_00305 0.66 +0.0
343,087 - ECD_00305 0.66 -0.9
343,087 - ECD_00305 0.66 +0.1
343,087 - ECD_00305 0.66 -1.4
343,090 + ECD_00305 0.67 -0.1
343,090 + ECD_00305 0.67 -0.8
343,091 - ECD_00305 0.67 -0.1
343,091 - ECD_00305 0.67 -1.6
343,161 + ECD_00305 0.74 -1.8
343,162 - ECD_00305 0.74 -0.3
343,162 - ECD_00305 0.74 -0.6
343,162 - ECD_00305 0.74 +0.3
343,162 - ECD_00305 0.74 -0.4
343,166 - ECD_00305 0.75 +0.2
343,311 + ECD_00305 0.90 +0.0
343,331 + -1.9
343,421 + +0.4
343,573 + ECD_00306 0.17 +0.4
343,574 - ECD_00306 0.17 +0.6
343,577 + ECD_00306 0.17 -1.2
343,578 - ECD_00306 0.17 -0.1
343,769 - ECD_00306 0.36 -0.6
343,826 - ECD_00306 0.42 +0.4
343,888 + ECD_00306 0.48 -0.6
343,888 + ECD_00306 0.48 -0.5
343,892 + ECD_00306 0.48 -1.1
343,892 + ECD_00306 0.48 -0.1
343,892 + ECD_00306 0.48 -1.0
344,165 + ECD_00306 0.75 -0.5
344,327 - +0.2
344,374 + -1.2
344,444 + +0.4
344,444 + +0.4
344,699 - +1.4
344,726 + +1.1
344,752 + +0.3
344,752 + +0.2
344,793 + +0.2
344,958 - ECD_00307 0.14 -1.0
344,962 - ECD_00307 0.14 -0.3
345,031 - ECD_00307 0.20 +0.8
345,226 + ECD_00307 0.36 -0.1
345,227 - ECD_00307 0.36 -1.0
345,287 + ECD_00307 0.41 +0.2
345,287 + ECD_00307 0.41 -0.7
345,416 + ECD_00307 0.51 -0.6

Or see this region's nucleotide sequence