Strain Fitness in Escherichia coli BL21 around ECD_03881

Experiment: Bas28

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03880 and ECD_03881 overlap by 4 nucleotidesECD_03881 and ECD_03882 overlap by 4 nucleotides ECD_03880: ECD_03880 - sensory histidine kinase in two-component regulatory system with ZraR, at 4,109,972 to 4,111,348 _03880 ECD_03881: ECD_03881 - fused DNA-binding response regulator in two-component regulatory system with ZraS: response regulator/sigma54 interaction protein, at 4,111,345 to 4,112,670 _03881 ECD_03882: ECD_03882 - phosphoribosylglycinamide synthetase phosphoribosylamine-glycine ligase, at 4,112,667 to 4,113,956 _03882 Position (kb) 4111 4112 4113Strain fitness (log2 ratio) -2 -1 0 1at 4110.410 kb on + strand, within ECD_03880at 4110.460 kb on + strand, within ECD_03880at 4110.461 kb on - strand, within ECD_03880at 4110.471 kb on - strand, within ECD_03880at 4110.471 kb on - strand, within ECD_03880at 4110.514 kb on + strand, within ECD_03880at 4110.559 kb on + strand, within ECD_03880at 4110.560 kb on - strand, within ECD_03880at 4110.614 kb on + strand, within ECD_03880at 4110.739 kb on + strand, within ECD_03880at 4110.740 kb on - strand, within ECD_03880at 4110.755 kb on + strand, within ECD_03880at 4110.755 kb on + strand, within ECD_03880at 4110.755 kb on + strand, within ECD_03880at 4110.924 kb on + strand, within ECD_03880at 4110.925 kb on - strand, within ECD_03880at 4110.934 kb on - strand, within ECD_03880at 4111.044 kb on - strand, within ECD_03880at 4111.055 kb on - strand, within ECD_03880at 4111.055 kb on - strand, within ECD_03880at 4111.085 kb on - strand, within ECD_03880at 4111.234 kb on + strandat 4111.235 kb on - strandat 4111.258 kb on + strandat 4111.258 kb on + strandat 4111.259 kb on - strandat 4111.259 kb on - strandat 4111.259 kb on - strandat 4111.324 kb on + strandat 4111.401 kb on + strandat 4111.416 kb on - strandat 4111.416 kb on - strandat 4111.433 kb on - strandat 4111.434 kb on + strandat 4111.590 kb on + strand, within ECD_03881at 4111.623 kb on - strand, within ECD_03881at 4111.652 kb on - strand, within ECD_03881at 4111.682 kb on + strand, within ECD_03881at 4111.713 kb on + strand, within ECD_03881at 4111.713 kb on + strand, within ECD_03881at 4111.714 kb on - strand, within ECD_03881at 4111.714 kb on - strand, within ECD_03881at 4111.722 kb on + strand, within ECD_03881at 4111.722 kb on + strand, within ECD_03881at 4111.723 kb on - strand, within ECD_03881at 4112.077 kb on - strand, within ECD_03881at 4112.154 kb on + strand, within ECD_03881at 4112.299 kb on - strand, within ECD_03881at 4112.344 kb on - strand, within ECD_03881at 4112.368 kb on - strand, within ECD_03881at 4112.415 kb on + strand, within ECD_03881at 4112.470 kb on + strand, within ECD_03881at 4112.471 kb on - strand, within ECD_03881at 4112.472 kb on + strand, within ECD_03881at 4112.472 kb on + strand, within ECD_03881at 4112.473 kb on - strand, within ECD_03881at 4112.805 kb on + strand, within ECD_03882at 4112.827 kb on - strand, within ECD_03882at 4112.827 kb on - strand, within ECD_03882at 4113.160 kb on + strand, within ECD_03882at 4113.161 kb on - strand, within ECD_03882at 4113.161 kb on - strand, within ECD_03882at 4113.206 kb on + strand, within ECD_03882at 4113.206 kb on + strand, within ECD_03882at 4113.207 kb on - strand, within ECD_03882at 4113.207 kb on - strand, within ECD_03882at 4113.207 kb on - strand, within ECD_03882at 4113.446 kb on + strand, within ECD_03882at 4113.446 kb on + strand, within ECD_03882at 4113.447 kb on - strand, within ECD_03882at 4113.556 kb on + strand, within ECD_03882at 4113.556 kb on + strand, within ECD_03882at 4113.557 kb on - strand, within ECD_03882at 4113.573 kb on + strand, within ECD_03882at 4113.573 kb on + strand, within ECD_03882at 4113.611 kb on + strand, within ECD_03882at 4113.612 kb on - strand, within ECD_03882

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas28
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4,110,410 + ECD_03880 0.32 +0.6
4,110,460 + ECD_03880 0.35 -0.8
4,110,461 - ECD_03880 0.36 +0.5
4,110,471 - ECD_03880 0.36 -0.1
4,110,471 - ECD_03880 0.36 +0.4
4,110,514 + ECD_03880 0.39 +1.2
4,110,559 + ECD_03880 0.43 +0.0
4,110,560 - ECD_03880 0.43 +0.8
4,110,614 + ECD_03880 0.47 -0.1
4,110,739 + ECD_03880 0.56 -0.1
4,110,740 - ECD_03880 0.56 -1.0
4,110,755 + ECD_03880 0.57 -1.5
4,110,755 + ECD_03880 0.57 -1.2
4,110,755 + ECD_03880 0.57 +0.4
4,110,924 + ECD_03880 0.69 -0.3
4,110,925 - ECD_03880 0.69 +0.3
4,110,934 - ECD_03880 0.70 +0.1
4,111,044 - ECD_03880 0.78 +0.2
4,111,055 - ECD_03880 0.79 -0.2
4,111,055 - ECD_03880 0.79 +0.2
4,111,085 - ECD_03880 0.81 +0.8
4,111,234 + +1.3
4,111,235 - +0.3
4,111,258 + +0.3
4,111,258 + -0.1
4,111,259 - +0.4
4,111,259 - +0.9
4,111,259 - -1.2
4,111,324 + -0.2
4,111,401 + +0.2
4,111,416 - +0.3
4,111,416 - +0.3
4,111,433 - -0.4
4,111,434 + +0.1
4,111,590 + ECD_03881 0.18 -1.3
4,111,623 - ECD_03881 0.21 -0.8
4,111,652 - ECD_03881 0.23 -0.6
4,111,682 + ECD_03881 0.25 +0.0
4,111,713 + ECD_03881 0.28 +0.5
4,111,713 + ECD_03881 0.28 -0.1
4,111,714 - ECD_03881 0.28 +0.6
4,111,714 - ECD_03881 0.28 -0.3
4,111,722 + ECD_03881 0.28 +0.1
4,111,722 + ECD_03881 0.28 -0.7
4,111,723 - ECD_03881 0.29 +1.0
4,112,077 - ECD_03881 0.55 +0.4
4,112,154 + ECD_03881 0.61 -0.7
4,112,299 - ECD_03881 0.72 -0.1
4,112,344 - ECD_03881 0.75 -0.5
4,112,368 - ECD_03881 0.77 -1.1
4,112,415 + ECD_03881 0.81 -0.6
4,112,470 + ECD_03881 0.85 +0.5
4,112,471 - ECD_03881 0.85 +0.1
4,112,472 + ECD_03881 0.85 -1.2
4,112,472 + ECD_03881 0.85 +0.2
4,112,473 - ECD_03881 0.85 -0.2
4,112,805 + ECD_03882 0.11 -0.0
4,112,827 - ECD_03882 0.12 +0.2
4,112,827 - ECD_03882 0.12 -0.2
4,113,160 + ECD_03882 0.38 -0.6
4,113,161 - ECD_03882 0.38 -0.8
4,113,161 - ECD_03882 0.38 +0.4
4,113,206 + ECD_03882 0.42 +0.1
4,113,206 + ECD_03882 0.42 +0.0
4,113,207 - ECD_03882 0.42 +0.3
4,113,207 - ECD_03882 0.42 +0.4
4,113,207 - ECD_03882 0.42 +0.6
4,113,446 + ECD_03882 0.60 -1.8
4,113,446 + ECD_03882 0.60 +1.1
4,113,447 - ECD_03882 0.60 +0.2
4,113,556 + ECD_03882 0.69 -1.2
4,113,556 + ECD_03882 0.69 +0.7
4,113,557 - ECD_03882 0.69 -0.1
4,113,573 + ECD_03882 0.70 +0.2
4,113,573 + ECD_03882 0.70 -1.3
4,113,611 + ECD_03882 0.73 +0.4
4,113,612 - ECD_03882 0.73 -0.3

Or see this region's nucleotide sequence