Experiment: Bas28
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03812 and ECD_03813 are separated by 425 nucleotides ECD_03813 and ECD_03814 are separated by 84 nucleotides ECD_03814 and ECD_03815 are separated by 92 nucleotides
ECD_03812: ECD_03812 - glycerol facilitator, at 4,025,167 to 4,026,012
_03812
ECD_03813: ECD_03813 - FtsZ stabilizer, septal ring assembly factor, cell division stimulator, at 4,026,438 to 4,026,683
_03813
ECD_03814: ECD_03814 - ribonuclease E (RNase E) inhibitor protein, at 4,026,768 to 4,027,253
_03814
ECD_03815: ECD_03815 - 1,4-dihydroxy-2-naphthoate octaprenyltransferase, at 4,027,346 to 4,028,272
_03815
Position (kb)
4026
4027
4028 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 4025.799 kb on + strand, within ECD_03812 at 4025.812 kb on - strand, within ECD_03812 at 4025.843 kb on + strand, within ECD_03812 at 4025.844 kb on - strand, within ECD_03812 at 4025.844 kb on - strand, within ECD_03812 at 4026.031 kb on + strand at 4026.032 kb on - strand at 4026.032 kb on - strand at 4026.032 kb on - strand at 4026.043 kb on + strand at 4026.043 kb on + strand at 4026.043 kb on + strand at 4026.043 kb on + strand at 4026.044 kb on - strand at 4026.088 kb on + strand at 4026.088 kb on + strand at 4026.120 kb on + strand at 4026.175 kb on - strand at 4026.189 kb on + strand at 4026.255 kb on + strand at 4026.255 kb on + strand at 4026.256 kb on - strand at 4026.256 kb on - strand at 4026.256 kb on - strand at 4026.256 kb on - strand at 4026.293 kb on + strand at 4026.336 kb on + strand at 4026.336 kb on + strand at 4026.336 kb on + strand at 4026.337 kb on - strand at 4026.352 kb on + strand at 4026.353 kb on - strand at 4026.353 kb on - strand at 4026.369 kb on + strand at 4026.369 kb on + strand at 4026.373 kb on - strand at 4026.373 kb on - strand at 4026.437 kb on + strand at 4026.438 kb on - strand at 4026.481 kb on + strand, within ECD_03813 at 4026.685 kb on + strand at 4026.685 kb on + strand at 4026.712 kb on + strand at 4026.712 kb on + strand at 4026.719 kb on + strand at 4026.719 kb on + strand at 4026.820 kb on + strand, within ECD_03814 at 4026.958 kb on - strand, within ECD_03814 at 4026.958 kb on - strand, within ECD_03814 at 4026.958 kb on - strand, within ECD_03814 at 4027.138 kb on - strand, within ECD_03814 at 4027.146 kb on + strand, within ECD_03814 at 4027.147 kb on - strand, within ECD_03814 at 4027.147 kb on - strand, within ECD_03814 at 4027.219 kb on + strand at 4027.219 kb on + strand at 4027.220 kb on - strand at 4027.220 kb on - strand at 4027.220 kb on - strand at 4027.220 kb on - strand at 4027.241 kb on + strand at 4027.242 kb on - strand at 4027.247 kb on - strand at 4027.253 kb on + strand at 4027.254 kb on - strand at 4027.259 kb on + strand at 4027.260 kb on - strand at 4027.260 kb on - strand at 4027.260 kb on - strand at 4027.291 kb on - strand at 4027.417 kb on + strand at 4027.418 kb on - strand at 4027.467 kb on + strand, within ECD_03815 at 4027.468 kb on - strand, within ECD_03815 at 4027.526 kb on - strand, within ECD_03815 at 4027.543 kb on + strand, within ECD_03815 at 4027.543 kb on + strand, within ECD_03815 at 4027.614 kb on - strand, within ECD_03815 at 4027.676 kb on - strand, within ECD_03815 at 4027.679 kb on - strand, within ECD_03815 at 4027.679 kb on - strand, within ECD_03815 at 4027.686 kb on - strand, within ECD_03815 at 4027.744 kb on + strand, within ECD_03815 at 4027.744 kb on + strand, within ECD_03815 at 4027.744 kb on + strand, within ECD_03815 at 4027.744 kb on + strand, within ECD_03815 at 4027.744 kb on + strand, within ECD_03815 at 4027.745 kb on - strand, within ECD_03815 at 4027.754 kb on + strand, within ECD_03815 at 4027.755 kb on - strand, within ECD_03815 at 4027.755 kb on - strand, within ECD_03815 at 4027.759 kb on - strand, within ECD_03815 at 4027.759 kb on - strand, within ECD_03815 at 4027.808 kb on - strand, within ECD_03815 at 4027.823 kb on - strand, within ECD_03815 at 4027.824 kb on + strand, within ECD_03815 at 4027.825 kb on - strand, within ECD_03815 at 4027.825 kb on - strand, within ECD_03815 at 4027.825 kb on - strand, within ECD_03815 at 4027.830 kb on + strand, within ECD_03815 at 4027.831 kb on - strand, within ECD_03815 at 4027.851 kb on + strand, within ECD_03815 at 4027.852 kb on - strand, within ECD_03815 at 4027.852 kb on - strand, within ECD_03815 at 4027.852 kb on - strand, within ECD_03815 at 4027.916 kb on - strand, within ECD_03815 at 4027.916 kb on - strand, within ECD_03815 at 4027.973 kb on - strand, within ECD_03815 at 4027.973 kb on - strand, within ECD_03815 at 4028.105 kb on + strand, within ECD_03815 at 4028.105 kb on + strand, within ECD_03815 at 4028.106 kb on - strand, within ECD_03815 at 4028.106 kb on - strand, within ECD_03815 at 4028.119 kb on + strand, within ECD_03815 at 4028.119 kb on + strand, within ECD_03815 at 4028.188 kb on + strand at 4028.225 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas28 remove 4,025,799 + ECD_03812 0.75 +0.6 4,025,812 - ECD_03812 0.76 +0.6 4,025,843 + ECD_03812 0.80 +0.6 4,025,844 - ECD_03812 0.80 +0.7 4,025,844 - ECD_03812 0.80 +1.2 4,026,031 + +0.9 4,026,032 - +0.9 4,026,032 - +0.1 4,026,032 - +0.4 4,026,043 + +0.5 4,026,043 + +0.2 4,026,043 + +0.3 4,026,043 + +0.7 4,026,044 - +0.7 4,026,088 + +0.7 4,026,088 + +0.4 4,026,120 + -1.2 4,026,175 - -0.4 4,026,189 + +0.8 4,026,255 + -0.2 4,026,255 + +0.3 4,026,256 - -0.2 4,026,256 - +0.6 4,026,256 - +0.8 4,026,256 - -0.0 4,026,293 + -0.1 4,026,336 + +0.2 4,026,336 + +0.3 4,026,336 + -0.6 4,026,337 - +0.8 4,026,352 + -0.2 4,026,353 - +0.7 4,026,353 - +0.2 4,026,369 + +0.4 4,026,369 + -0.4 4,026,373 - +0.9 4,026,373 - -0.9 4,026,437 + -0.7 4,026,438 - +0.3 4,026,481 + ECD_03813 0.17 -0.3 4,026,685 + -0.0 4,026,685 + +0.4 4,026,712 + +0.1 4,026,712 + -0.3 4,026,719 + +1.5 4,026,719 + -0.6 4,026,820 + ECD_03814 0.11 +0.9 4,026,958 - ECD_03814 0.39 +0.1 4,026,958 - ECD_03814 0.39 -0.0 4,026,958 - ECD_03814 0.39 +0.3 4,027,138 - ECD_03814 0.76 -0.1 4,027,146 + ECD_03814 0.78 +0.3 4,027,147 - ECD_03814 0.78 +0.7 4,027,147 - ECD_03814 0.78 +0.0 4,027,219 + -1.2 4,027,219 + -1.1 4,027,220 - +0.5 4,027,220 - +0.1 4,027,220 - +0.2 4,027,220 - +0.1 4,027,241 + +0.2 4,027,242 - -1.2 4,027,247 - -0.6 4,027,253 + +0.1 4,027,254 - +1.0 4,027,259 + -0.7 4,027,260 - -0.7 4,027,260 - +0.3 4,027,260 - -0.1 4,027,291 - -2.0 4,027,417 + +0.1 4,027,418 - +0.2 4,027,467 + ECD_03815 0.13 -0.2 4,027,468 - ECD_03815 0.13 -0.5 4,027,526 - ECD_03815 0.19 -0.4 4,027,543 + ECD_03815 0.21 -0.4 4,027,543 + ECD_03815 0.21 +0.6 4,027,614 - ECD_03815 0.29 -0.3 4,027,676 - ECD_03815 0.36 +0.4 4,027,679 - ECD_03815 0.36 +0.1 4,027,679 - ECD_03815 0.36 +0.2 4,027,686 - ECD_03815 0.37 -1.2 4,027,744 + ECD_03815 0.43 -0.0 4,027,744 + ECD_03815 0.43 -0.0 4,027,744 + ECD_03815 0.43 +0.2 4,027,744 + ECD_03815 0.43 +0.3 4,027,744 + ECD_03815 0.43 +0.1 4,027,745 - ECD_03815 0.43 +0.8 4,027,754 + ECD_03815 0.44 -1.2 4,027,755 - ECD_03815 0.44 +0.0 4,027,755 - ECD_03815 0.44 -2.8 4,027,759 - ECD_03815 0.45 -0.6 4,027,759 - ECD_03815 0.45 -0.6 4,027,808 - ECD_03815 0.50 -0.4 4,027,823 - ECD_03815 0.51 -0.1 4,027,824 + ECD_03815 0.52 -0.1 4,027,825 - ECD_03815 0.52 +0.1 4,027,825 - ECD_03815 0.52 -1.1 4,027,825 - ECD_03815 0.52 +0.5 4,027,830 + ECD_03815 0.52 +0.3 4,027,831 - ECD_03815 0.52 +0.9 4,027,851 + ECD_03815 0.54 +0.0 4,027,852 - ECD_03815 0.55 -1.2 4,027,852 - ECD_03815 0.55 +1.0 4,027,852 - ECD_03815 0.55 +0.2 4,027,916 - ECD_03815 0.61 -0.6 4,027,916 - ECD_03815 0.61 +1.1 4,027,973 - ECD_03815 0.68 +0.4 4,027,973 - ECD_03815 0.68 -0.2 4,028,105 + ECD_03815 0.82 +0.2 4,028,105 + ECD_03815 0.82 -0.7 4,028,106 - ECD_03815 0.82 +0.1 4,028,106 - ECD_03815 0.82 +0.1 4,028,119 + ECD_03815 0.83 +0.3 4,028,119 + ECD_03815 0.83 -0.6 4,028,188 + +0.6 4,028,225 + +0.1
Or see this region's nucleotide sequence