Strain Fitness in Escherichia coli BL21 around ECD_03782

Experiment: Bas28

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03781 and ECD_03782 are separated by 49 nucleotidesECD_03782 and ECD_03783 overlap by 1 nucleotides ECD_03781: ECD_03781 - DUF3829 family lipoprotein, at 3,993,589 to 3,994,644 _03781 ECD_03782: ECD_03782 - putative frv operon regulator; contains a PTS EIIA domain, at 3,994,694 to 3,996,442 _03782 ECD_03783: ECD_03783 - putative peptidase, at 3,996,442 to 3,997,512 _03783 Position (kb) 3994 3995 3996 3997Strain fitness (log2 ratio) -2 -1 0 1at 3993.732 kb on + strand, within ECD_03781at 3993.763 kb on - strand, within ECD_03781at 3993.829 kb on + strand, within ECD_03781at 3993.829 kb on + strand, within ECD_03781at 3993.830 kb on - strand, within ECD_03781at 3993.830 kb on - strand, within ECD_03781at 3993.851 kb on + strand, within ECD_03781at 3993.851 kb on + strand, within ECD_03781at 3993.852 kb on - strand, within ECD_03781at 3993.941 kb on - strand, within ECD_03781at 3993.949 kb on + strand, within ECD_03781at 3994.051 kb on + strand, within ECD_03781at 3994.051 kb on + strand, within ECD_03781at 3994.052 kb on - strand, within ECD_03781at 3994.207 kb on + strand, within ECD_03781at 3994.607 kb on - strandat 3994.628 kb on - strandat 3994.630 kb on - strandat 3994.630 kb on - strandat 3994.630 kb on - strandat 3994.633 kb on - strandat 3994.658 kb on + strandat 3994.658 kb on + strandat 3994.717 kb on + strandat 3994.728 kb on + strandat 3994.728 kb on + strandat 3994.729 kb on - strandat 3994.772 kb on + strandat 3994.772 kb on + strandat 3994.772 kb on + strandat 3994.786 kb on - strandat 3994.886 kb on - strand, within ECD_03782at 3995.008 kb on + strand, within ECD_03782at 3995.011 kb on + strand, within ECD_03782at 3995.012 kb on - strand, within ECD_03782at 3995.012 kb on - strand, within ECD_03782at 3995.012 kb on - strand, within ECD_03782at 3995.053 kb on + strand, within ECD_03782at 3995.053 kb on + strand, within ECD_03782at 3995.053 kb on + strand, within ECD_03782at 3995.054 kb on - strand, within ECD_03782at 3995.232 kb on + strand, within ECD_03782at 3995.294 kb on + strand, within ECD_03782at 3995.294 kb on + strand, within ECD_03782at 3995.299 kb on + strand, within ECD_03782at 3995.300 kb on - strand, within ECD_03782at 3995.308 kb on + strand, within ECD_03782at 3995.324 kb on + strand, within ECD_03782at 3995.436 kb on + strand, within ECD_03782at 3995.489 kb on + strand, within ECD_03782at 3995.494 kb on + strand, within ECD_03782at 3995.498 kb on - strand, within ECD_03782at 3995.513 kb on - strand, within ECD_03782at 3995.601 kb on - strand, within ECD_03782at 3995.603 kb on + strand, within ECD_03782at 3995.641 kb on + strand, within ECD_03782at 3995.641 kb on + strand, within ECD_03782at 3995.641 kb on + strand, within ECD_03782at 3995.642 kb on - strand, within ECD_03782at 3995.644 kb on + strand, within ECD_03782at 3995.645 kb on - strand, within ECD_03782at 3995.705 kb on + strand, within ECD_03782at 3995.753 kb on + strand, within ECD_03782at 3995.753 kb on + strand, within ECD_03782at 3995.753 kb on + strand, within ECD_03782at 3995.753 kb on + strand, within ECD_03782at 3995.754 kb on - strand, within ECD_03782at 3995.783 kb on - strand, within ECD_03782at 3995.783 kb on - strand, within ECD_03782at 3995.783 kb on - strand, within ECD_03782at 3995.783 kb on - strand, within ECD_03782at 3995.845 kb on + strand, within ECD_03782at 3995.883 kb on + strand, within ECD_03782at 3995.883 kb on + strand, within ECD_03782at 3995.957 kb on + strand, within ECD_03782at 3996.119 kb on + strand, within ECD_03782at 3996.140 kb on - strand, within ECD_03782at 3996.140 kb on - strand, within ECD_03782at 3996.175 kb on + strand, within ECD_03782at 3996.176 kb on - strand, within ECD_03782at 3996.182 kb on + strand, within ECD_03782at 3996.324 kb on + strandat 3996.325 kb on - strandat 3996.331 kb on + strandat 3996.443 kb on + strandat 3996.490 kb on + strandat 3996.490 kb on + strandat 3996.491 kb on - strandat 3996.533 kb on + strandat 3996.534 kb on - strandat 3996.552 kb on + strand, within ECD_03783at 3996.676 kb on + strand, within ECD_03783at 3996.684 kb on + strand, within ECD_03783at 3996.684 kb on + strand, within ECD_03783at 3996.734 kb on + strand, within ECD_03783at 3996.789 kb on + strand, within ECD_03783at 3996.855 kb on + strand, within ECD_03783at 3996.920 kb on + strand, within ECD_03783at 3996.940 kb on - strand, within ECD_03783at 3996.955 kb on + strand, within ECD_03783at 3996.955 kb on + strand, within ECD_03783at 3996.955 kb on + strand, within ECD_03783at 3996.956 kb on - strand, within ECD_03783at 3997.012 kb on - strand, within ECD_03783at 3997.220 kb on - strand, within ECD_03783at 3997.329 kb on + strand, within ECD_03783at 3997.329 kb on + strand, within ECD_03783at 3997.329 kb on + strand, within ECD_03783at 3997.329 kb on + strand, within ECD_03783

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas28
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3,993,732 + ECD_03781 0.14 +0.8
3,993,763 - ECD_03781 0.16 +0.3
3,993,829 + ECD_03781 0.23 +0.0
3,993,829 + ECD_03781 0.23 +0.1
3,993,830 - ECD_03781 0.23 -0.1
3,993,830 - ECD_03781 0.23 +0.2
3,993,851 + ECD_03781 0.25 -0.0
3,993,851 + ECD_03781 0.25 +0.4
3,993,852 - ECD_03781 0.25 +1.2
3,993,941 - ECD_03781 0.33 +0.2
3,993,949 + ECD_03781 0.34 +0.2
3,994,051 + ECD_03781 0.44 +0.1
3,994,051 + ECD_03781 0.44 -0.5
3,994,052 - ECD_03781 0.44 +0.3
3,994,207 + ECD_03781 0.59 +0.4
3,994,607 - -0.6
3,994,628 - -0.0
3,994,630 - +0.9
3,994,630 - -0.3
3,994,630 - -0.5
3,994,633 - -0.4
3,994,658 + -0.7
3,994,658 + +0.9
3,994,717 + -0.1
3,994,728 + -0.6
3,994,728 + +0.4
3,994,729 - +1.4
3,994,772 + +0.9
3,994,772 + -0.1
3,994,772 + +0.1
3,994,786 - +0.1
3,994,886 - ECD_03782 0.11 -0.0
3,995,008 + ECD_03782 0.18 +0.7
3,995,011 + ECD_03782 0.18 +0.3
3,995,012 - ECD_03782 0.18 -0.1
3,995,012 - ECD_03782 0.18 -0.0
3,995,012 - ECD_03782 0.18 +0.3
3,995,053 + ECD_03782 0.21 +0.2
3,995,053 + ECD_03782 0.21 +0.7
3,995,053 + ECD_03782 0.21 -0.4
3,995,054 - ECD_03782 0.21 +0.1
3,995,232 + ECD_03782 0.31 +0.1
3,995,294 + ECD_03782 0.34 -0.1
3,995,294 + ECD_03782 0.34 +1.2
3,995,299 + ECD_03782 0.35 -0.2
3,995,300 - ECD_03782 0.35 +0.6
3,995,308 + ECD_03782 0.35 -0.7
3,995,324 + ECD_03782 0.36 -0.7
3,995,436 + ECD_03782 0.42 -1.0
3,995,489 + ECD_03782 0.45 -1.2
3,995,494 + ECD_03782 0.46 -1.5
3,995,498 - ECD_03782 0.46 -0.4
3,995,513 - ECD_03782 0.47 -0.2
3,995,601 - ECD_03782 0.52 +0.2
3,995,603 + ECD_03782 0.52 -0.3
3,995,641 + ECD_03782 0.54 -2.4
3,995,641 + ECD_03782 0.54 -0.5
3,995,641 + ECD_03782 0.54 -0.4
3,995,642 - ECD_03782 0.54 -0.6
3,995,644 + ECD_03782 0.54 +0.4
3,995,645 - ECD_03782 0.54 +0.2
3,995,705 + ECD_03782 0.58 +0.0
3,995,753 + ECD_03782 0.61 -0.5
3,995,753 + ECD_03782 0.61 -0.8
3,995,753 + ECD_03782 0.61 -0.5
3,995,753 + ECD_03782 0.61 -0.9
3,995,754 - ECD_03782 0.61 +0.0
3,995,783 - ECD_03782 0.62 -0.2
3,995,783 - ECD_03782 0.62 -0.8
3,995,783 - ECD_03782 0.62 -0.1
3,995,783 - ECD_03782 0.62 +0.3
3,995,845 + ECD_03782 0.66 +1.0
3,995,883 + ECD_03782 0.68 +0.9
3,995,883 + ECD_03782 0.68 +0.1
3,995,957 + ECD_03782 0.72 +0.6
3,996,119 + ECD_03782 0.81 -0.2
3,996,140 - ECD_03782 0.83 -0.4
3,996,140 - ECD_03782 0.83 +0.1
3,996,175 + ECD_03782 0.85 -0.1
3,996,176 - ECD_03782 0.85 -0.3
3,996,182 + ECD_03782 0.85 -0.1
3,996,324 + -0.4
3,996,325 - +0.1
3,996,331 + -0.3
3,996,443 + +0.1
3,996,490 + +0.4
3,996,490 + +1.5
3,996,491 - -0.8
3,996,533 + +0.3
3,996,534 - +0.1
3,996,552 + ECD_03783 0.10 +0.3
3,996,676 + ECD_03783 0.22 +0.1
3,996,684 + ECD_03783 0.23 +0.2
3,996,684 + ECD_03783 0.23 +0.6
3,996,734 + ECD_03783 0.27 -1.5
3,996,789 + ECD_03783 0.32 -0.2
3,996,855 + ECD_03783 0.39 +1.0
3,996,920 + ECD_03783 0.45 -0.1
3,996,940 - ECD_03783 0.46 +0.6
3,996,955 + ECD_03783 0.48 +0.3
3,996,955 + ECD_03783 0.48 -0.6
3,996,955 + ECD_03783 0.48 +0.5
3,996,956 - ECD_03783 0.48 -0.2
3,997,012 - ECD_03783 0.53 +0.1
3,997,220 - ECD_03783 0.73 +0.2
3,997,329 + ECD_03783 0.83 -0.2
3,997,329 + ECD_03783 0.83 -0.1
3,997,329 + ECD_03783 0.83 +0.2
3,997,329 + ECD_03783 0.83 +0.2

Or see this region's nucleotide sequence