Experiment: Bas28
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03781 and ECD_03782 are separated by 49 nucleotides ECD_03782 and ECD_03783 overlap by 1 nucleotides
ECD_03781: ECD_03781 - DUF3829 family lipoprotein, at 3,993,589 to 3,994,644
_03781
ECD_03782: ECD_03782 - putative frv operon regulator; contains a PTS EIIA domain, at 3,994,694 to 3,996,442
_03782
ECD_03783: ECD_03783 - putative peptidase, at 3,996,442 to 3,997,512
_03783
Position (kb)
3994
3995
3996
3997 Strain fitness (log2 ratio)
-2
-1
0
1 at 3993.732 kb on + strand, within ECD_03781 at 3993.763 kb on - strand, within ECD_03781 at 3993.829 kb on + strand, within ECD_03781 at 3993.829 kb on + strand, within ECD_03781 at 3993.830 kb on - strand, within ECD_03781 at 3993.830 kb on - strand, within ECD_03781 at 3993.851 kb on + strand, within ECD_03781 at 3993.851 kb on + strand, within ECD_03781 at 3993.852 kb on - strand, within ECD_03781 at 3993.941 kb on - strand, within ECD_03781 at 3993.949 kb on + strand, within ECD_03781 at 3994.051 kb on + strand, within ECD_03781 at 3994.051 kb on + strand, within ECD_03781 at 3994.052 kb on - strand, within ECD_03781 at 3994.207 kb on + strand, within ECD_03781 at 3994.607 kb on - strand at 3994.628 kb on - strand at 3994.630 kb on - strand at 3994.630 kb on - strand at 3994.630 kb on - strand at 3994.633 kb on - strand at 3994.658 kb on + strand at 3994.658 kb on + strand at 3994.717 kb on + strand at 3994.728 kb on + strand at 3994.728 kb on + strand at 3994.729 kb on - strand at 3994.772 kb on + strand at 3994.772 kb on + strand at 3994.772 kb on + strand at 3994.786 kb on - strand at 3994.886 kb on - strand, within ECD_03782 at 3995.008 kb on + strand, within ECD_03782 at 3995.011 kb on + strand, within ECD_03782 at 3995.012 kb on - strand, within ECD_03782 at 3995.012 kb on - strand, within ECD_03782 at 3995.012 kb on - strand, within ECD_03782 at 3995.053 kb on + strand, within ECD_03782 at 3995.053 kb on + strand, within ECD_03782 at 3995.053 kb on + strand, within ECD_03782 at 3995.054 kb on - strand, within ECD_03782 at 3995.232 kb on + strand, within ECD_03782 at 3995.294 kb on + strand, within ECD_03782 at 3995.294 kb on + strand, within ECD_03782 at 3995.299 kb on + strand, within ECD_03782 at 3995.300 kb on - strand, within ECD_03782 at 3995.308 kb on + strand, within ECD_03782 at 3995.324 kb on + strand, within ECD_03782 at 3995.436 kb on + strand, within ECD_03782 at 3995.489 kb on + strand, within ECD_03782 at 3995.494 kb on + strand, within ECD_03782 at 3995.498 kb on - strand, within ECD_03782 at 3995.513 kb on - strand, within ECD_03782 at 3995.601 kb on - strand, within ECD_03782 at 3995.603 kb on + strand, within ECD_03782 at 3995.641 kb on + strand, within ECD_03782 at 3995.641 kb on + strand, within ECD_03782 at 3995.641 kb on + strand, within ECD_03782 at 3995.642 kb on - strand, within ECD_03782 at 3995.644 kb on + strand, within ECD_03782 at 3995.645 kb on - strand, within ECD_03782 at 3995.705 kb on + strand, within ECD_03782 at 3995.753 kb on + strand, within ECD_03782 at 3995.753 kb on + strand, within ECD_03782 at 3995.753 kb on + strand, within ECD_03782 at 3995.753 kb on + strand, within ECD_03782 at 3995.754 kb on - strand, within ECD_03782 at 3995.783 kb on - strand, within ECD_03782 at 3995.783 kb on - strand, within ECD_03782 at 3995.783 kb on - strand, within ECD_03782 at 3995.783 kb on - strand, within ECD_03782 at 3995.845 kb on + strand, within ECD_03782 at 3995.883 kb on + strand, within ECD_03782 at 3995.883 kb on + strand, within ECD_03782 at 3995.957 kb on + strand, within ECD_03782 at 3996.119 kb on + strand, within ECD_03782 at 3996.140 kb on - strand, within ECD_03782 at 3996.140 kb on - strand, within ECD_03782 at 3996.175 kb on + strand, within ECD_03782 at 3996.176 kb on - strand, within ECD_03782 at 3996.182 kb on + strand, within ECD_03782 at 3996.324 kb on + strand at 3996.325 kb on - strand at 3996.331 kb on + strand at 3996.443 kb on + strand at 3996.490 kb on + strand at 3996.490 kb on + strand at 3996.491 kb on - strand at 3996.533 kb on + strand at 3996.534 kb on - strand at 3996.552 kb on + strand, within ECD_03783 at 3996.676 kb on + strand, within ECD_03783 at 3996.684 kb on + strand, within ECD_03783 at 3996.684 kb on + strand, within ECD_03783 at 3996.734 kb on + strand, within ECD_03783 at 3996.789 kb on + strand, within ECD_03783 at 3996.855 kb on + strand, within ECD_03783 at 3996.920 kb on + strand, within ECD_03783 at 3996.940 kb on - strand, within ECD_03783 at 3996.955 kb on + strand, within ECD_03783 at 3996.955 kb on + strand, within ECD_03783 at 3996.955 kb on + strand, within ECD_03783 at 3996.956 kb on - strand, within ECD_03783 at 3997.012 kb on - strand, within ECD_03783 at 3997.220 kb on - strand, within ECD_03783 at 3997.329 kb on + strand, within ECD_03783 at 3997.329 kb on + strand, within ECD_03783 at 3997.329 kb on + strand, within ECD_03783 at 3997.329 kb on + strand, within ECD_03783
Per-strain Table
Position Strand Gene LocusTag Fraction Bas28 remove 3,993,732 + ECD_03781 0.14 +0.8 3,993,763 - ECD_03781 0.16 +0.3 3,993,829 + ECD_03781 0.23 +0.0 3,993,829 + ECD_03781 0.23 +0.1 3,993,830 - ECD_03781 0.23 -0.1 3,993,830 - ECD_03781 0.23 +0.2 3,993,851 + ECD_03781 0.25 -0.0 3,993,851 + ECD_03781 0.25 +0.4 3,993,852 - ECD_03781 0.25 +1.2 3,993,941 - ECD_03781 0.33 +0.2 3,993,949 + ECD_03781 0.34 +0.2 3,994,051 + ECD_03781 0.44 +0.1 3,994,051 + ECD_03781 0.44 -0.5 3,994,052 - ECD_03781 0.44 +0.3 3,994,207 + ECD_03781 0.59 +0.4 3,994,607 - -0.6 3,994,628 - -0.0 3,994,630 - +0.9 3,994,630 - -0.3 3,994,630 - -0.5 3,994,633 - -0.4 3,994,658 + -0.7 3,994,658 + +0.9 3,994,717 + -0.1 3,994,728 + -0.6 3,994,728 + +0.4 3,994,729 - +1.4 3,994,772 + +0.9 3,994,772 + -0.1 3,994,772 + +0.1 3,994,786 - +0.1 3,994,886 - ECD_03782 0.11 -0.0 3,995,008 + ECD_03782 0.18 +0.7 3,995,011 + ECD_03782 0.18 +0.3 3,995,012 - ECD_03782 0.18 -0.1 3,995,012 - ECD_03782 0.18 -0.0 3,995,012 - ECD_03782 0.18 +0.3 3,995,053 + ECD_03782 0.21 +0.2 3,995,053 + ECD_03782 0.21 +0.7 3,995,053 + ECD_03782 0.21 -0.4 3,995,054 - ECD_03782 0.21 +0.1 3,995,232 + ECD_03782 0.31 +0.1 3,995,294 + ECD_03782 0.34 -0.1 3,995,294 + ECD_03782 0.34 +1.2 3,995,299 + ECD_03782 0.35 -0.2 3,995,300 - ECD_03782 0.35 +0.6 3,995,308 + ECD_03782 0.35 -0.7 3,995,324 + ECD_03782 0.36 -0.7 3,995,436 + ECD_03782 0.42 -1.0 3,995,489 + ECD_03782 0.45 -1.2 3,995,494 + ECD_03782 0.46 -1.5 3,995,498 - ECD_03782 0.46 -0.4 3,995,513 - ECD_03782 0.47 -0.2 3,995,601 - ECD_03782 0.52 +0.2 3,995,603 + ECD_03782 0.52 -0.3 3,995,641 + ECD_03782 0.54 -2.4 3,995,641 + ECD_03782 0.54 -0.5 3,995,641 + ECD_03782 0.54 -0.4 3,995,642 - ECD_03782 0.54 -0.6 3,995,644 + ECD_03782 0.54 +0.4 3,995,645 - ECD_03782 0.54 +0.2 3,995,705 + ECD_03782 0.58 +0.0 3,995,753 + ECD_03782 0.61 -0.5 3,995,753 + ECD_03782 0.61 -0.8 3,995,753 + ECD_03782 0.61 -0.5 3,995,753 + ECD_03782 0.61 -0.9 3,995,754 - ECD_03782 0.61 +0.0 3,995,783 - ECD_03782 0.62 -0.2 3,995,783 - ECD_03782 0.62 -0.8 3,995,783 - ECD_03782 0.62 -0.1 3,995,783 - ECD_03782 0.62 +0.3 3,995,845 + ECD_03782 0.66 +1.0 3,995,883 + ECD_03782 0.68 +0.9 3,995,883 + ECD_03782 0.68 +0.1 3,995,957 + ECD_03782 0.72 +0.6 3,996,119 + ECD_03782 0.81 -0.2 3,996,140 - ECD_03782 0.83 -0.4 3,996,140 - ECD_03782 0.83 +0.1 3,996,175 + ECD_03782 0.85 -0.1 3,996,176 - ECD_03782 0.85 -0.3 3,996,182 + ECD_03782 0.85 -0.1 3,996,324 + -0.4 3,996,325 - +0.1 3,996,331 + -0.3 3,996,443 + +0.1 3,996,490 + +0.4 3,996,490 + +1.5 3,996,491 - -0.8 3,996,533 + +0.3 3,996,534 - +0.1 3,996,552 + ECD_03783 0.10 +0.3 3,996,676 + ECD_03783 0.22 +0.1 3,996,684 + ECD_03783 0.23 +0.2 3,996,684 + ECD_03783 0.23 +0.6 3,996,734 + ECD_03783 0.27 -1.5 3,996,789 + ECD_03783 0.32 -0.2 3,996,855 + ECD_03783 0.39 +1.0 3,996,920 + ECD_03783 0.45 -0.1 3,996,940 - ECD_03783 0.46 +0.6 3,996,955 + ECD_03783 0.48 +0.3 3,996,955 + ECD_03783 0.48 -0.6 3,996,955 + ECD_03783 0.48 +0.5 3,996,956 - ECD_03783 0.48 -0.2 3,997,012 - ECD_03783 0.53 +0.1 3,997,220 - ECD_03783 0.73 +0.2 3,997,329 + ECD_03783 0.83 -0.2 3,997,329 + ECD_03783 0.83 -0.1 3,997,329 + ECD_03783 0.83 +0.2 3,997,329 + ECD_03783 0.83 +0.2
Or see this region's nucleotide sequence