Strain Fitness in Escherichia coli BL21 around ECD_03780

Experiment: Bas28

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03779 and ECD_03780 are separated by 193 nucleotidesECD_03780 and ECD_03781 are separated by 152 nucleotides ECD_03779: ECD_03779 - formate dehydrogenase-O, large subunit, at 3,989,359 to 3,992,409 _03779 ECD_03780: ECD_03780 - formate dehydrogenase formation protein, at 3,992,603 to 3,993,436 _03780 ECD_03781: ECD_03781 - DUF3829 family lipoprotein, at 3,993,589 to 3,994,644 _03781 Position (kb) 3992 3993 3994Strain fitness (log2 ratio) -2 -1 0 1 2at 3991.617 kb on + strand, within ECD_03779at 3991.882 kb on + strand, within ECD_03779at 3991.883 kb on - strand, within ECD_03779at 3991.976 kb on + strand, within ECD_03779at 3991.976 kb on + strand, within ECD_03779at 3991.976 kb on + strand, within ECD_03779at 3991.976 kb on + strand, within ECD_03779at 3991.976 kb on + strand, within ECD_03779at 3991.976 kb on + strand, within ECD_03779at 3991.976 kb on + strand, within ECD_03779at 3991.977 kb on - strand, within ECD_03779at 3991.977 kb on - strand, within ECD_03779at 3991.980 kb on + strand, within ECD_03779at 3992.052 kb on + strand, within ECD_03779at 3992.052 kb on + strand, within ECD_03779at 3992.053 kb on - strand, within ECD_03779at 3992.187 kb on + strandat 3992.187 kb on + strandat 3992.188 kb on - strandat 3992.188 kb on - strandat 3992.188 kb on - strandat 3992.188 kb on - strandat 3992.188 kb on - strandat 3992.225 kb on + strandat 3992.225 kb on + strandat 3992.226 kb on - strandat 3992.245 kb on + strandat 3992.255 kb on + strandat 3992.255 kb on + strandat 3992.255 kb on + strandat 3992.255 kb on + strandat 3992.256 kb on - strandat 3992.256 kb on - strandat 3992.256 kb on - strandat 3992.266 kb on - strandat 3992.295 kb on + strandat 3992.295 kb on + strandat 3992.296 kb on - strandat 3992.296 kb on - strandat 3992.297 kb on + strandat 3992.297 kb on + strandat 3992.297 kb on + strandat 3992.298 kb on - strandat 3992.320 kb on + strandat 3992.321 kb on - strandat 3992.383 kb on - strandat 3992.383 kb on - strandat 3992.383 kb on - strandat 3992.383 kb on - strandat 3992.482 kb on - strandat 3992.560 kb on + strandat 3992.566 kb on - strandat 3992.587 kb on - strandat 3992.595 kb on - strandat 3992.644 kb on + strandat 3992.688 kb on + strand, within ECD_03780at 3992.688 kb on + strand, within ECD_03780at 3992.741 kb on + strand, within ECD_03780at 3992.742 kb on - strand, within ECD_03780at 3992.742 kb on - strand, within ECD_03780at 3992.792 kb on + strand, within ECD_03780at 3992.875 kb on + strand, within ECD_03780at 3992.956 kb on + strand, within ECD_03780at 3992.970 kb on + strand, within ECD_03780at 3992.989 kb on + strand, within ECD_03780at 3992.989 kb on + strand, within ECD_03780at 3992.990 kb on - strand, within ECD_03780at 3992.990 kb on - strand, within ECD_03780at 3992.990 kb on - strand, within ECD_03780at 3992.990 kb on - strand, within ECD_03780at 3992.990 kb on - strand, within ECD_03780at 3993.063 kb on + strand, within ECD_03780at 3993.064 kb on - strand, within ECD_03780at 3993.064 kb on - strand, within ECD_03780at 3993.109 kb on + strand, within ECD_03780at 3993.109 kb on + strand, within ECD_03780at 3993.109 kb on + strand, within ECD_03780at 3993.109 kb on + strand, within ECD_03780at 3993.199 kb on - strand, within ECD_03780at 3993.266 kb on + strand, within ECD_03780at 3993.267 kb on - strand, within ECD_03780at 3993.362 kb on - strandat 3993.376 kb on - strandat 3993.376 kb on - strandat 3993.408 kb on - strandat 3993.408 kb on - strandat 3993.410 kb on - strandat 3993.732 kb on + strand, within ECD_03781at 3993.763 kb on - strand, within ECD_03781at 3993.829 kb on + strand, within ECD_03781at 3993.829 kb on + strand, within ECD_03781at 3993.830 kb on - strand, within ECD_03781at 3993.830 kb on - strand, within ECD_03781at 3993.851 kb on + strand, within ECD_03781at 3993.851 kb on + strand, within ECD_03781at 3993.852 kb on - strand, within ECD_03781at 3993.941 kb on - strand, within ECD_03781at 3993.949 kb on + strand, within ECD_03781at 3994.051 kb on + strand, within ECD_03781at 3994.051 kb on + strand, within ECD_03781at 3994.052 kb on - strand, within ECD_03781at 3994.207 kb on + strand, within ECD_03781

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas28
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3,991,617 + ECD_03779 0.74 +0.4
3,991,882 + ECD_03779 0.83 +0.1
3,991,883 - ECD_03779 0.83 -0.9
3,991,976 + ECD_03779 0.86 +0.4
3,991,976 + ECD_03779 0.86 -1.1
3,991,976 + ECD_03779 0.86 +0.0
3,991,976 + ECD_03779 0.86 +1.1
3,991,976 + ECD_03779 0.86 -0.8
3,991,976 + ECD_03779 0.86 +0.5
3,991,976 + ECD_03779 0.86 -0.4
3,991,977 - ECD_03779 0.86 -0.4
3,991,977 - ECD_03779 0.86 +0.3
3,991,980 + ECD_03779 0.86 -0.3
3,992,052 + ECD_03779 0.88 -0.5
3,992,052 + ECD_03779 0.88 +0.9
3,992,053 - ECD_03779 0.88 -0.3
3,992,187 + -0.0
3,992,187 + +0.1
3,992,188 - +0.1
3,992,188 - +0.9
3,992,188 - +0.6
3,992,188 - +0.1
3,992,188 - +0.2
3,992,225 + +0.1
3,992,225 + -0.1
3,992,226 - +0.6
3,992,245 + -0.9
3,992,255 + +0.6
3,992,255 + +0.5
3,992,255 + +0.1
3,992,255 + +1.3
3,992,256 - +0.5
3,992,256 - +0.6
3,992,256 - +0.3
3,992,266 - -0.1
3,992,295 + -0.1
3,992,295 + -0.1
3,992,296 - -0.3
3,992,296 - +0.2
3,992,297 + +0.0
3,992,297 + -0.9
3,992,297 + +0.4
3,992,298 - +0.2
3,992,320 + +0.4
3,992,321 - -0.3
3,992,383 - +0.1
3,992,383 - +0.3
3,992,383 - +0.0
3,992,383 - -0.3
3,992,482 - -1.5
3,992,560 + +0.2
3,992,566 - -0.3
3,992,587 - +0.4
3,992,595 - +0.3
3,992,644 + +0.1
3,992,688 + ECD_03780 0.10 -1.1
3,992,688 + ECD_03780 0.10 +2.3
3,992,741 + ECD_03780 0.17 -0.2
3,992,742 - ECD_03780 0.17 +0.1
3,992,742 - ECD_03780 0.17 +0.7
3,992,792 + ECD_03780 0.23 -0.8
3,992,875 + ECD_03780 0.33 +0.3
3,992,956 + ECD_03780 0.42 +0.5
3,992,970 + ECD_03780 0.44 +0.4
3,992,989 + ECD_03780 0.46 -1.3
3,992,989 + ECD_03780 0.46 +0.1
3,992,990 - ECD_03780 0.46 -0.5
3,992,990 - ECD_03780 0.46 +0.5
3,992,990 - ECD_03780 0.46 -1.4
3,992,990 - ECD_03780 0.46 -0.2
3,992,990 - ECD_03780 0.46 -0.1
3,993,063 + ECD_03780 0.55 -0.3
3,993,064 - ECD_03780 0.55 +0.0
3,993,064 - ECD_03780 0.55 -0.6
3,993,109 + ECD_03780 0.61 +0.2
3,993,109 + ECD_03780 0.61 -1.2
3,993,109 + ECD_03780 0.61 -0.2
3,993,109 + ECD_03780 0.61 +0.2
3,993,199 - ECD_03780 0.71 -0.1
3,993,266 + ECD_03780 0.79 -1.8
3,993,267 - ECD_03780 0.80 +1.5
3,993,362 - +0.2
3,993,376 - +0.0
3,993,376 - +0.6
3,993,408 - +1.0
3,993,408 - +0.3
3,993,410 - +0.3
3,993,732 + ECD_03781 0.14 +0.8
3,993,763 - ECD_03781 0.16 +0.3
3,993,829 + ECD_03781 0.23 +0.0
3,993,829 + ECD_03781 0.23 +0.1
3,993,830 - ECD_03781 0.23 -0.1
3,993,830 - ECD_03781 0.23 +0.2
3,993,851 + ECD_03781 0.25 -0.0
3,993,851 + ECD_03781 0.25 +0.4
3,993,852 - ECD_03781 0.25 +1.2
3,993,941 - ECD_03781 0.33 +0.3
3,993,949 + ECD_03781 0.34 +0.2
3,994,051 + ECD_03781 0.44 +0.1
3,994,051 + ECD_03781 0.44 -0.5
3,994,052 - ECD_03781 0.44 +0.3
3,994,207 + ECD_03781 0.59 +0.4

Or see this region's nucleotide sequence