Experiment: Bas28
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03779 and ECD_03780 are separated by 193 nucleotides ECD_03780 and ECD_03781 are separated by 152 nucleotides
ECD_03779: ECD_03779 - formate dehydrogenase-O, large subunit, at 3,989,359 to 3,992,409
_03779
ECD_03780: ECD_03780 - formate dehydrogenase formation protein, at 3,992,603 to 3,993,436
_03780
ECD_03781: ECD_03781 - DUF3829 family lipoprotein, at 3,993,589 to 3,994,644
_03781
Position (kb)
3992
3993
3994 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3991.617 kb on + strand, within ECD_03779 at 3991.882 kb on + strand, within ECD_03779 at 3991.883 kb on - strand, within ECD_03779 at 3991.976 kb on + strand, within ECD_03779 at 3991.976 kb on + strand, within ECD_03779 at 3991.976 kb on + strand, within ECD_03779 at 3991.976 kb on + strand, within ECD_03779 at 3991.976 kb on + strand, within ECD_03779 at 3991.976 kb on + strand, within ECD_03779 at 3991.976 kb on + strand, within ECD_03779 at 3991.977 kb on - strand, within ECD_03779 at 3991.977 kb on - strand, within ECD_03779 at 3991.980 kb on + strand, within ECD_03779 at 3992.052 kb on + strand, within ECD_03779 at 3992.052 kb on + strand, within ECD_03779 at 3992.053 kb on - strand, within ECD_03779 at 3992.187 kb on + strand at 3992.187 kb on + strand at 3992.188 kb on - strand at 3992.188 kb on - strand at 3992.188 kb on - strand at 3992.188 kb on - strand at 3992.188 kb on - strand at 3992.225 kb on + strand at 3992.225 kb on + strand at 3992.226 kb on - strand at 3992.245 kb on + strand at 3992.255 kb on + strand at 3992.255 kb on + strand at 3992.255 kb on + strand at 3992.255 kb on + strand at 3992.256 kb on - strand at 3992.256 kb on - strand at 3992.256 kb on - strand at 3992.266 kb on - strand at 3992.295 kb on + strand at 3992.295 kb on + strand at 3992.296 kb on - strand at 3992.296 kb on - strand at 3992.297 kb on + strand at 3992.297 kb on + strand at 3992.297 kb on + strand at 3992.298 kb on - strand at 3992.320 kb on + strand at 3992.321 kb on - strand at 3992.383 kb on - strand at 3992.383 kb on - strand at 3992.383 kb on - strand at 3992.383 kb on - strand at 3992.482 kb on - strand at 3992.560 kb on + strand at 3992.566 kb on - strand at 3992.587 kb on - strand at 3992.595 kb on - strand at 3992.644 kb on + strand at 3992.688 kb on + strand, within ECD_03780 at 3992.688 kb on + strand, within ECD_03780 at 3992.741 kb on + strand, within ECD_03780 at 3992.742 kb on - strand, within ECD_03780 at 3992.742 kb on - strand, within ECD_03780 at 3992.792 kb on + strand, within ECD_03780 at 3992.875 kb on + strand, within ECD_03780 at 3992.956 kb on + strand, within ECD_03780 at 3992.970 kb on + strand, within ECD_03780 at 3992.989 kb on + strand, within ECD_03780 at 3992.989 kb on + strand, within ECD_03780 at 3992.990 kb on - strand, within ECD_03780 at 3992.990 kb on - strand, within ECD_03780 at 3992.990 kb on - strand, within ECD_03780 at 3992.990 kb on - strand, within ECD_03780 at 3992.990 kb on - strand, within ECD_03780 at 3993.063 kb on + strand, within ECD_03780 at 3993.064 kb on - strand, within ECD_03780 at 3993.064 kb on - strand, within ECD_03780 at 3993.109 kb on + strand, within ECD_03780 at 3993.109 kb on + strand, within ECD_03780 at 3993.109 kb on + strand, within ECD_03780 at 3993.109 kb on + strand, within ECD_03780 at 3993.199 kb on - strand, within ECD_03780 at 3993.266 kb on + strand, within ECD_03780 at 3993.267 kb on - strand, within ECD_03780 at 3993.362 kb on - strand at 3993.376 kb on - strand at 3993.376 kb on - strand at 3993.408 kb on - strand at 3993.408 kb on - strand at 3993.410 kb on - strand at 3993.732 kb on + strand, within ECD_03781 at 3993.763 kb on - strand, within ECD_03781 at 3993.829 kb on + strand, within ECD_03781 at 3993.829 kb on + strand, within ECD_03781 at 3993.830 kb on - strand, within ECD_03781 at 3993.830 kb on - strand, within ECD_03781 at 3993.851 kb on + strand, within ECD_03781 at 3993.851 kb on + strand, within ECD_03781 at 3993.852 kb on - strand, within ECD_03781 at 3993.941 kb on - strand, within ECD_03781 at 3993.949 kb on + strand, within ECD_03781 at 3994.051 kb on + strand, within ECD_03781 at 3994.051 kb on + strand, within ECD_03781 at 3994.052 kb on - strand, within ECD_03781 at 3994.207 kb on + strand, within ECD_03781
Per-strain Table
Position Strand Gene LocusTag Fraction Bas28 remove 3,991,617 + ECD_03779 0.74 +0.4 3,991,882 + ECD_03779 0.83 +0.1 3,991,883 - ECD_03779 0.83 -0.9 3,991,976 + ECD_03779 0.86 +0.4 3,991,976 + ECD_03779 0.86 -1.1 3,991,976 + ECD_03779 0.86 +0.0 3,991,976 + ECD_03779 0.86 +1.1 3,991,976 + ECD_03779 0.86 -0.8 3,991,976 + ECD_03779 0.86 +0.5 3,991,976 + ECD_03779 0.86 -0.4 3,991,977 - ECD_03779 0.86 -0.4 3,991,977 - ECD_03779 0.86 +0.3 3,991,980 + ECD_03779 0.86 -0.3 3,992,052 + ECD_03779 0.88 -0.5 3,992,052 + ECD_03779 0.88 +0.9 3,992,053 - ECD_03779 0.88 -0.3 3,992,187 + -0.0 3,992,187 + +0.1 3,992,188 - +0.1 3,992,188 - +0.9 3,992,188 - +0.6 3,992,188 - +0.1 3,992,188 - +0.2 3,992,225 + +0.1 3,992,225 + -0.1 3,992,226 - +0.6 3,992,245 + -0.9 3,992,255 + +0.6 3,992,255 + +0.5 3,992,255 + +0.1 3,992,255 + +1.3 3,992,256 - +0.5 3,992,256 - +0.6 3,992,256 - +0.3 3,992,266 - -0.1 3,992,295 + -0.1 3,992,295 + -0.1 3,992,296 - -0.3 3,992,296 - +0.2 3,992,297 + +0.0 3,992,297 + -0.9 3,992,297 + +0.4 3,992,298 - +0.2 3,992,320 + +0.4 3,992,321 - -0.3 3,992,383 - +0.1 3,992,383 - +0.3 3,992,383 - +0.0 3,992,383 - -0.3 3,992,482 - -1.5 3,992,560 + +0.2 3,992,566 - -0.3 3,992,587 - +0.4 3,992,595 - +0.3 3,992,644 + +0.1 3,992,688 + ECD_03780 0.10 -1.1 3,992,688 + ECD_03780 0.10 +2.3 3,992,741 + ECD_03780 0.17 -0.2 3,992,742 - ECD_03780 0.17 +0.1 3,992,742 - ECD_03780 0.17 +0.7 3,992,792 + ECD_03780 0.23 -0.8 3,992,875 + ECD_03780 0.33 +0.3 3,992,956 + ECD_03780 0.42 +0.5 3,992,970 + ECD_03780 0.44 +0.4 3,992,989 + ECD_03780 0.46 -1.3 3,992,989 + ECD_03780 0.46 +0.1 3,992,990 - ECD_03780 0.46 -0.5 3,992,990 - ECD_03780 0.46 +0.5 3,992,990 - ECD_03780 0.46 -1.4 3,992,990 - ECD_03780 0.46 -0.2 3,992,990 - ECD_03780 0.46 -0.1 3,993,063 + ECD_03780 0.55 -0.3 3,993,064 - ECD_03780 0.55 +0.0 3,993,064 - ECD_03780 0.55 -0.6 3,993,109 + ECD_03780 0.61 +0.2 3,993,109 + ECD_03780 0.61 -1.2 3,993,109 + ECD_03780 0.61 -0.2 3,993,109 + ECD_03780 0.61 +0.2 3,993,199 - ECD_03780 0.71 -0.1 3,993,266 + ECD_03780 0.79 -1.8 3,993,267 - ECD_03780 0.80 +1.5 3,993,362 - +0.2 3,993,376 - +0.0 3,993,376 - +0.6 3,993,408 - +1.0 3,993,408 - +0.3 3,993,410 - +0.3 3,993,732 + ECD_03781 0.14 +0.8 3,993,763 - ECD_03781 0.16 +0.3 3,993,829 + ECD_03781 0.23 +0.0 3,993,829 + ECD_03781 0.23 +0.1 3,993,830 - ECD_03781 0.23 -0.1 3,993,830 - ECD_03781 0.23 +0.2 3,993,851 + ECD_03781 0.25 -0.0 3,993,851 + ECD_03781 0.25 +0.4 3,993,852 - ECD_03781 0.25 +1.2 3,993,941 - ECD_03781 0.33 +0.3 3,993,949 + ECD_03781 0.34 +0.2 3,994,051 + ECD_03781 0.44 +0.1 3,994,051 + ECD_03781 0.44 -0.5 3,994,052 - ECD_03781 0.44 +0.3 3,994,207 + ECD_03781 0.59 +0.4
Or see this region's nucleotide sequence