Strain Fitness in Escherichia coli BL21 around ECD_03178

Experiment: Bas28

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03177 and ECD_03178 overlap by 4 nucleotidesECD_03178 and ECD_03179 are separated by 9 nucleotidesECD_03179 and ECD_03180 are separated by 7 nucleotidesECD_03180 and ECD_03181 overlap by 4 nucleotides ECD_03177: ECD_03177 - general secretory pathway component, cryptic, at 3,318,573 to 3,320,054 _03177 ECD_03178: ECD_03178 - general secretory pathway component, cryptic, at 3,320,051 to 3,321,247 _03178 ECD_03179: ECD_03179 - pseudopilin, cryptic, general secretion pathway, at 3,321,257 to 3,321,694 _03179 ECD_03180: ECD_03180 - putative general secretory pathway component, cryptic, at 3,321,702 to 3,322,211 _03180 ECD_03181: ECD_03181 - general secretory pathway component, cryptic, at 3,322,208 to 3,322,585 _03181 Position (kb) 3320 3321 3322Strain fitness (log2 ratio) -1 0 1at 3319.052 kb on + strand, within ECD_03177at 3319.052 kb on + strand, within ECD_03177at 3319.052 kb on + strand, within ECD_03177at 3319.053 kb on - strand, within ECD_03177at 3319.053 kb on - strand, within ECD_03177at 3319.065 kb on - strand, within ECD_03177at 3319.142 kb on + strand, within ECD_03177at 3319.143 kb on - strand, within ECD_03177at 3319.143 kb on - strand, within ECD_03177at 3319.147 kb on + strand, within ECD_03177at 3319.147 kb on + strand, within ECD_03177at 3319.147 kb on + strand, within ECD_03177at 3319.147 kb on + strand, within ECD_03177at 3319.147 kb on + strand, within ECD_03177at 3319.147 kb on + strand, within ECD_03177at 3319.147 kb on + strand, within ECD_03177at 3319.147 kb on + strand, within ECD_03177at 3319.148 kb on - strand, within ECD_03177at 3319.148 kb on - strand, within ECD_03177at 3319.148 kb on - strand, within ECD_03177at 3319.148 kb on - strand, within ECD_03177at 3319.148 kb on - strand, within ECD_03177at 3319.148 kb on - strand, within ECD_03177at 3319.148 kb on - strand, within ECD_03177at 3319.148 kb on - strand, within ECD_03177at 3319.148 kb on - strand, within ECD_03177at 3319.148 kb on - strand, within ECD_03177at 3319.148 kb on - strand, within ECD_03177at 3319.148 kb on - strand, within ECD_03177at 3319.148 kb on - strand, within ECD_03177at 3319.148 kb on - strand, within ECD_03177at 3319.179 kb on + strand, within ECD_03177at 3319.180 kb on - strand, within ECD_03177at 3319.180 kb on - strand, within ECD_03177at 3319.180 kb on - strand, within ECD_03177at 3319.180 kb on - strand, within ECD_03177at 3319.180 kb on - strand, within ECD_03177at 3319.302 kb on - strand, within ECD_03177at 3319.302 kb on - strand, within ECD_03177at 3319.304 kb on + strand, within ECD_03177at 3319.305 kb on - strand, within ECD_03177at 3319.350 kb on + strand, within ECD_03177at 3319.374 kb on - strand, within ECD_03177at 3319.416 kb on + strand, within ECD_03177at 3319.417 kb on - strand, within ECD_03177at 3319.463 kb on + strand, within ECD_03177at 3319.607 kb on + strand, within ECD_03177at 3319.608 kb on - strand, within ECD_03177at 3319.774 kb on - strand, within ECD_03177at 3319.960 kb on + strandat 3319.988 kb on - strandat 3320.015 kb on + strandat 3320.058 kb on - strandat 3320.320 kb on + strand, within ECD_03178at 3320.321 kb on - strand, within ECD_03178at 3320.323 kb on + strand, within ECD_03178at 3320.343 kb on + strand, within ECD_03178at 3320.344 kb on - strand, within ECD_03178at 3320.394 kb on + strand, within ECD_03178at 3320.394 kb on + strand, within ECD_03178at 3320.395 kb on - strand, within ECD_03178at 3320.546 kb on + strand, within ECD_03178at 3320.546 kb on + strand, within ECD_03178at 3320.547 kb on - strand, within ECD_03178at 3320.555 kb on - strand, within ECD_03178at 3320.555 kb on - strand, within ECD_03178at 3320.555 kb on - strand, within ECD_03178at 3320.564 kb on - strand, within ECD_03178at 3320.635 kb on + strand, within ECD_03178at 3320.636 kb on - strand, within ECD_03178at 3320.659 kb on + strand, within ECD_03178at 3320.660 kb on - strand, within ECD_03178at 3320.673 kb on + strand, within ECD_03178at 3320.712 kb on + strand, within ECD_03178at 3320.713 kb on - strand, within ECD_03178at 3320.713 kb on - strand, within ECD_03178at 3320.729 kb on - strand, within ECD_03178at 3320.729 kb on - strand, within ECD_03178at 3320.849 kb on + strand, within ECD_03178at 3320.850 kb on - strand, within ECD_03178at 3320.850 kb on - strand, within ECD_03178at 3320.850 kb on - strand, within ECD_03178at 3320.850 kb on - strand, within ECD_03178at 3320.862 kb on + strand, within ECD_03178at 3320.867 kb on - strand, within ECD_03178at 3320.867 kb on - strand, within ECD_03178at 3320.867 kb on - strand, within ECD_03178at 3321.038 kb on + strand, within ECD_03178at 3321.038 kb on + strand, within ECD_03178at 3321.038 kb on + strand, within ECD_03178at 3321.038 kb on + strand, within ECD_03178at 3321.038 kb on + strand, within ECD_03178at 3321.038 kb on + strand, within ECD_03178at 3321.039 kb on - strand, within ECD_03178at 3321.039 kb on - strand, within ECD_03178at 3321.039 kb on - strand, within ECD_03178at 3321.039 kb on - strand, within ECD_03178at 3321.039 kb on - strand, within ECD_03178at 3321.082 kb on - strand, within ECD_03178at 3321.169 kb on + strandat 3321.287 kb on - strandat 3321.301 kb on + strand, within ECD_03179at 3321.354 kb on + strand, within ECD_03179at 3321.354 kb on + strand, within ECD_03179at 3321.428 kb on - strand, within ECD_03179at 3321.431 kb on + strand, within ECD_03179at 3321.431 kb on + strand, within ECD_03179at 3321.431 kb on + strand, within ECD_03179at 3321.432 kb on - strand, within ECD_03179at 3321.432 kb on - strand, within ECD_03179at 3321.432 kb on - strand, within ECD_03179at 3321.432 kb on - strand, within ECD_03179at 3321.432 kb on - strand, within ECD_03179at 3321.486 kb on + strand, within ECD_03179at 3321.487 kb on - strand, within ECD_03179at 3321.522 kb on - strand, within ECD_03179at 3321.522 kb on - strand, within ECD_03179at 3321.522 kb on - strand, within ECD_03179at 3321.523 kb on + strand, within ECD_03179at 3321.524 kb on - strand, within ECD_03179at 3321.536 kb on + strand, within ECD_03179at 3321.537 kb on - strand, within ECD_03179at 3321.538 kb on + strand, within ECD_03179at 3321.539 kb on - strand, within ECD_03179at 3321.575 kb on + strand, within ECD_03179at 3321.575 kb on + strand, within ECD_03179at 3321.575 kb on + strand, within ECD_03179at 3321.575 kb on + strand, within ECD_03179at 3321.576 kb on - strand, within ECD_03179at 3321.608 kb on + strand, within ECD_03179at 3321.608 kb on + strand, within ECD_03179at 3321.608 kb on + strand, within ECD_03179at 3321.609 kb on - strand, within ECD_03179at 3321.609 kb on - strand, within ECD_03179at 3321.609 kb on - strand, within ECD_03179at 3321.692 kb on + strandat 3321.789 kb on + strand, within ECD_03180at 3321.790 kb on - strand, within ECD_03180at 3321.860 kb on - strand, within ECD_03180at 3321.973 kb on + strand, within ECD_03180at 3322.043 kb on + strand, within ECD_03180at 3322.154 kb on - strand, within ECD_03180

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas28
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3,319,052 + ECD_03177 0.32 +0.9
3,319,052 + ECD_03177 0.32 -0.1
3,319,052 + ECD_03177 0.32 -0.2
3,319,053 - ECD_03177 0.32 +0.9
3,319,053 - ECD_03177 0.32 +0.2
3,319,065 - ECD_03177 0.33 -1.1
3,319,142 + ECD_03177 0.38 -0.3
3,319,143 - ECD_03177 0.38 +0.1
3,319,143 - ECD_03177 0.38 -0.1
3,319,147 + ECD_03177 0.39 -1.2
3,319,147 + ECD_03177 0.39 -0.1
3,319,147 + ECD_03177 0.39 -0.8
3,319,147 + ECD_03177 0.39 -0.2
3,319,147 + ECD_03177 0.39 +0.1
3,319,147 + ECD_03177 0.39 -0.4
3,319,147 + ECD_03177 0.39 +0.2
3,319,147 + ECD_03177 0.39 -0.2
3,319,148 - ECD_03177 0.39 -1.6
3,319,148 - ECD_03177 0.39 -1.1
3,319,148 - ECD_03177 0.39 -0.3
3,319,148 - ECD_03177 0.39 -0.6
3,319,148 - ECD_03177 0.39 +0.2
3,319,148 - ECD_03177 0.39 +0.3
3,319,148 - ECD_03177 0.39 +0.8
3,319,148 - ECD_03177 0.39 -1.0
3,319,148 - ECD_03177 0.39 +0.2
3,319,148 - ECD_03177 0.39 -0.0
3,319,148 - ECD_03177 0.39 -0.1
3,319,148 - ECD_03177 0.39 +0.1
3,319,148 - ECD_03177 0.39 +0.6
3,319,148 - ECD_03177 0.39 +0.3
3,319,179 + ECD_03177 0.41 -0.5
3,319,180 - ECD_03177 0.41 -1.0
3,319,180 - ECD_03177 0.41 -0.2
3,319,180 - ECD_03177 0.41 +0.7
3,319,180 - ECD_03177 0.41 +0.7
3,319,180 - ECD_03177 0.41 +0.1
3,319,302 - ECD_03177 0.49 -0.8
3,319,302 - ECD_03177 0.49 +0.6
3,319,304 + ECD_03177 0.49 +0.3
3,319,305 - ECD_03177 0.49 +0.2
3,319,350 + ECD_03177 0.52 +0.0
3,319,374 - ECD_03177 0.54 -0.2
3,319,416 + ECD_03177 0.57 -0.8
3,319,417 - ECD_03177 0.57 -0.3
3,319,463 + ECD_03177 0.60 +0.4
3,319,607 + ECD_03177 0.70 -0.0
3,319,608 - ECD_03177 0.70 +0.7
3,319,774 - ECD_03177 0.81 -0.3
3,319,960 + -0.0
3,319,988 - -0.3
3,320,015 + -1.0
3,320,058 - +0.4
3,320,320 + ECD_03178 0.22 +0.3
3,320,321 - ECD_03178 0.23 +0.7
3,320,323 + ECD_03178 0.23 +0.6
3,320,343 + ECD_03178 0.24 +0.1
3,320,344 - ECD_03178 0.24 -0.5
3,320,394 + ECD_03178 0.29 -0.4
3,320,394 + ECD_03178 0.29 -0.2
3,320,395 - ECD_03178 0.29 +0.8
3,320,546 + ECD_03178 0.41 +0.8
3,320,546 + ECD_03178 0.41 +0.2
3,320,547 - ECD_03178 0.41 +0.4
3,320,555 - ECD_03178 0.42 +0.0
3,320,555 - ECD_03178 0.42 -0.2
3,320,555 - ECD_03178 0.42 +0.6
3,320,564 - ECD_03178 0.43 -0.1
3,320,635 + ECD_03178 0.49 +0.6
3,320,636 - ECD_03178 0.49 +0.3
3,320,659 + ECD_03178 0.51 -0.5
3,320,660 - ECD_03178 0.51 +0.4
3,320,673 + ECD_03178 0.52 +0.2
3,320,712 + ECD_03178 0.55 -0.5
3,320,713 - ECD_03178 0.55 -0.1
3,320,713 - ECD_03178 0.55 +0.2
3,320,729 - ECD_03178 0.57 -0.3
3,320,729 - ECD_03178 0.57 -0.2
3,320,849 + ECD_03178 0.67 +0.4
3,320,850 - ECD_03178 0.67 +0.4
3,320,850 - ECD_03178 0.67 +0.4
3,320,850 - ECD_03178 0.67 -1.4
3,320,850 - ECD_03178 0.67 +0.3
3,320,862 + ECD_03178 0.68 +0.8
3,320,867 - ECD_03178 0.68 +0.7
3,320,867 - ECD_03178 0.68 -1.5
3,320,867 - ECD_03178 0.68 +0.2
3,321,038 + ECD_03178 0.82 +0.5
3,321,038 + ECD_03178 0.82 +1.1
3,321,038 + ECD_03178 0.82 -0.1
3,321,038 + ECD_03178 0.82 +0.5
3,321,038 + ECD_03178 0.82 -0.2
3,321,038 + ECD_03178 0.82 -0.7
3,321,039 - ECD_03178 0.83 -0.1
3,321,039 - ECD_03178 0.83 -0.5
3,321,039 - ECD_03178 0.83 -0.1
3,321,039 - ECD_03178 0.83 -0.2
3,321,039 - ECD_03178 0.83 +0.2
3,321,082 - ECD_03178 0.86 +0.1
3,321,169 + -1.6
3,321,287 - -0.2
3,321,301 + ECD_03179 0.10 -0.2
3,321,354 + ECD_03179 0.22 -0.5
3,321,354 + ECD_03179 0.22 -0.1
3,321,428 - ECD_03179 0.39 +0.6
3,321,431 + ECD_03179 0.40 +0.1
3,321,431 + ECD_03179 0.40 -0.2
3,321,431 + ECD_03179 0.40 +0.9
3,321,432 - ECD_03179 0.40 -0.3
3,321,432 - ECD_03179 0.40 +0.2
3,321,432 - ECD_03179 0.40 +0.9
3,321,432 - ECD_03179 0.40 -0.6
3,321,432 - ECD_03179 0.40 +0.4
3,321,486 + ECD_03179 0.52 +0.1
3,321,487 - ECD_03179 0.53 -0.9
3,321,522 - ECD_03179 0.61 +0.2
3,321,522 - ECD_03179 0.61 +0.4
3,321,522 - ECD_03179 0.61 +1.0
3,321,523 + ECD_03179 0.61 -0.9
3,321,524 - ECD_03179 0.61 +0.4
3,321,536 + ECD_03179 0.64 +0.5
3,321,537 - ECD_03179 0.64 +0.9
3,321,538 + ECD_03179 0.64 +0.5
3,321,539 - ECD_03179 0.64 +0.5
3,321,575 + ECD_03179 0.73 +0.3
3,321,575 + ECD_03179 0.73 +0.2
3,321,575 + ECD_03179 0.73 -0.4
3,321,575 + ECD_03179 0.73 +0.2
3,321,576 - ECD_03179 0.73 -0.4
3,321,608 + ECD_03179 0.80 -0.2
3,321,608 + ECD_03179 0.80 +0.6
3,321,608 + ECD_03179 0.80 +0.0
3,321,609 - ECD_03179 0.80 +0.4
3,321,609 - ECD_03179 0.80 +0.4
3,321,609 - ECD_03179 0.80 +0.8
3,321,692 + -1.0
3,321,789 + ECD_03180 0.17 -0.0
3,321,790 - ECD_03180 0.17 +0.6
3,321,860 - ECD_03180 0.31 +0.2
3,321,973 + ECD_03180 0.53 +0.1
3,322,043 + ECD_03180 0.67 -0.7
3,322,154 - ECD_03180 0.89 -0.7

Or see this region's nucleotide sequence