Experiment: Bas28
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03177 and ECD_03178 overlap by 4 nucleotides ECD_03178 and ECD_03179 are separated by 9 nucleotides ECD_03179 and ECD_03180 are separated by 7 nucleotides ECD_03180 and ECD_03181 overlap by 4 nucleotides
ECD_03177: ECD_03177 - general secretory pathway component, cryptic, at 3,318,573 to 3,320,054
_03177
ECD_03178: ECD_03178 - general secretory pathway component, cryptic, at 3,320,051 to 3,321,247
_03178
ECD_03179: ECD_03179 - pseudopilin, cryptic, general secretion pathway, at 3,321,257 to 3,321,694
_03179
ECD_03180: ECD_03180 - putative general secretory pathway component, cryptic, at 3,321,702 to 3,322,211
_03180
ECD_03181: ECD_03181 - general secretory pathway component, cryptic, at 3,322,208 to 3,322,585
_03181
Position (kb)
3320
3321
3322 Strain fitness (log2 ratio)
-1
0
1 at 3319.052 kb on + strand, within ECD_03177 at 3319.052 kb on + strand, within ECD_03177 at 3319.052 kb on + strand, within ECD_03177 at 3319.053 kb on - strand, within ECD_03177 at 3319.053 kb on - strand, within ECD_03177 at 3319.065 kb on - strand, within ECD_03177 at 3319.142 kb on + strand, within ECD_03177 at 3319.143 kb on - strand, within ECD_03177 at 3319.143 kb on - strand, within ECD_03177 at 3319.147 kb on + strand, within ECD_03177 at 3319.147 kb on + strand, within ECD_03177 at 3319.147 kb on + strand, within ECD_03177 at 3319.147 kb on + strand, within ECD_03177 at 3319.147 kb on + strand, within ECD_03177 at 3319.147 kb on + strand, within ECD_03177 at 3319.147 kb on + strand, within ECD_03177 at 3319.147 kb on + strand, within ECD_03177 at 3319.148 kb on - strand, within ECD_03177 at 3319.148 kb on - strand, within ECD_03177 at 3319.148 kb on - strand, within ECD_03177 at 3319.148 kb on - strand, within ECD_03177 at 3319.148 kb on - strand, within ECD_03177 at 3319.148 kb on - strand, within ECD_03177 at 3319.148 kb on - strand, within ECD_03177 at 3319.148 kb on - strand, within ECD_03177 at 3319.148 kb on - strand, within ECD_03177 at 3319.148 kb on - strand, within ECD_03177 at 3319.148 kb on - strand, within ECD_03177 at 3319.148 kb on - strand, within ECD_03177 at 3319.148 kb on - strand, within ECD_03177 at 3319.148 kb on - strand, within ECD_03177 at 3319.179 kb on + strand, within ECD_03177 at 3319.180 kb on - strand, within ECD_03177 at 3319.180 kb on - strand, within ECD_03177 at 3319.180 kb on - strand, within ECD_03177 at 3319.180 kb on - strand, within ECD_03177 at 3319.180 kb on - strand, within ECD_03177 at 3319.302 kb on - strand, within ECD_03177 at 3319.302 kb on - strand, within ECD_03177 at 3319.304 kb on + strand, within ECD_03177 at 3319.305 kb on - strand, within ECD_03177 at 3319.350 kb on + strand, within ECD_03177 at 3319.374 kb on - strand, within ECD_03177 at 3319.416 kb on + strand, within ECD_03177 at 3319.417 kb on - strand, within ECD_03177 at 3319.463 kb on + strand, within ECD_03177 at 3319.607 kb on + strand, within ECD_03177 at 3319.608 kb on - strand, within ECD_03177 at 3319.774 kb on - strand, within ECD_03177 at 3319.960 kb on + strand at 3319.988 kb on - strand at 3320.015 kb on + strand at 3320.058 kb on - strand at 3320.320 kb on + strand, within ECD_03178 at 3320.321 kb on - strand, within ECD_03178 at 3320.323 kb on + strand, within ECD_03178 at 3320.343 kb on + strand, within ECD_03178 at 3320.344 kb on - strand, within ECD_03178 at 3320.394 kb on + strand, within ECD_03178 at 3320.394 kb on + strand, within ECD_03178 at 3320.395 kb on - strand, within ECD_03178 at 3320.546 kb on + strand, within ECD_03178 at 3320.546 kb on + strand, within ECD_03178 at 3320.547 kb on - strand, within ECD_03178 at 3320.555 kb on - strand, within ECD_03178 at 3320.555 kb on - strand, within ECD_03178 at 3320.555 kb on - strand, within ECD_03178 at 3320.564 kb on - strand, within ECD_03178 at 3320.635 kb on + strand, within ECD_03178 at 3320.636 kb on - strand, within ECD_03178 at 3320.659 kb on + strand, within ECD_03178 at 3320.660 kb on - strand, within ECD_03178 at 3320.673 kb on + strand, within ECD_03178 at 3320.712 kb on + strand, within ECD_03178 at 3320.713 kb on - strand, within ECD_03178 at 3320.713 kb on - strand, within ECD_03178 at 3320.729 kb on - strand, within ECD_03178 at 3320.729 kb on - strand, within ECD_03178 at 3320.849 kb on + strand, within ECD_03178 at 3320.850 kb on - strand, within ECD_03178 at 3320.850 kb on - strand, within ECD_03178 at 3320.850 kb on - strand, within ECD_03178 at 3320.850 kb on - strand, within ECD_03178 at 3320.862 kb on + strand, within ECD_03178 at 3320.867 kb on - strand, within ECD_03178 at 3320.867 kb on - strand, within ECD_03178 at 3320.867 kb on - strand, within ECD_03178 at 3321.038 kb on + strand, within ECD_03178 at 3321.038 kb on + strand, within ECD_03178 at 3321.038 kb on + strand, within ECD_03178 at 3321.038 kb on + strand, within ECD_03178 at 3321.038 kb on + strand, within ECD_03178 at 3321.038 kb on + strand, within ECD_03178 at 3321.039 kb on - strand, within ECD_03178 at 3321.039 kb on - strand, within ECD_03178 at 3321.039 kb on - strand, within ECD_03178 at 3321.039 kb on - strand, within ECD_03178 at 3321.039 kb on - strand, within ECD_03178 at 3321.082 kb on - strand, within ECD_03178 at 3321.169 kb on + strand at 3321.287 kb on - strand at 3321.301 kb on + strand, within ECD_03179 at 3321.354 kb on + strand, within ECD_03179 at 3321.354 kb on + strand, within ECD_03179 at 3321.428 kb on - strand, within ECD_03179 at 3321.431 kb on + strand, within ECD_03179 at 3321.431 kb on + strand, within ECD_03179 at 3321.431 kb on + strand, within ECD_03179 at 3321.432 kb on - strand, within ECD_03179 at 3321.432 kb on - strand, within ECD_03179 at 3321.432 kb on - strand, within ECD_03179 at 3321.432 kb on - strand, within ECD_03179 at 3321.432 kb on - strand, within ECD_03179 at 3321.486 kb on + strand, within ECD_03179 at 3321.487 kb on - strand, within ECD_03179 at 3321.522 kb on - strand, within ECD_03179 at 3321.522 kb on - strand, within ECD_03179 at 3321.522 kb on - strand, within ECD_03179 at 3321.523 kb on + strand, within ECD_03179 at 3321.524 kb on - strand, within ECD_03179 at 3321.536 kb on + strand, within ECD_03179 at 3321.537 kb on - strand, within ECD_03179 at 3321.538 kb on + strand, within ECD_03179 at 3321.539 kb on - strand, within ECD_03179 at 3321.575 kb on + strand, within ECD_03179 at 3321.575 kb on + strand, within ECD_03179 at 3321.575 kb on + strand, within ECD_03179 at 3321.575 kb on + strand, within ECD_03179 at 3321.576 kb on - strand, within ECD_03179 at 3321.608 kb on + strand, within ECD_03179 at 3321.608 kb on + strand, within ECD_03179 at 3321.608 kb on + strand, within ECD_03179 at 3321.609 kb on - strand, within ECD_03179 at 3321.609 kb on - strand, within ECD_03179 at 3321.609 kb on - strand, within ECD_03179 at 3321.692 kb on + strand at 3321.789 kb on + strand, within ECD_03180 at 3321.790 kb on - strand, within ECD_03180 at 3321.860 kb on - strand, within ECD_03180 at 3321.973 kb on + strand, within ECD_03180 at 3322.043 kb on + strand, within ECD_03180 at 3322.154 kb on - strand, within ECD_03180
Per-strain Table
Position Strand Gene LocusTag Fraction Bas28 remove 3,319,052 + ECD_03177 0.32 +0.9 3,319,052 + ECD_03177 0.32 -0.1 3,319,052 + ECD_03177 0.32 -0.2 3,319,053 - ECD_03177 0.32 +0.9 3,319,053 - ECD_03177 0.32 +0.2 3,319,065 - ECD_03177 0.33 -1.1 3,319,142 + ECD_03177 0.38 -0.3 3,319,143 - ECD_03177 0.38 +0.1 3,319,143 - ECD_03177 0.38 -0.1 3,319,147 + ECD_03177 0.39 -1.2 3,319,147 + ECD_03177 0.39 -0.1 3,319,147 + ECD_03177 0.39 -0.8 3,319,147 + ECD_03177 0.39 -0.2 3,319,147 + ECD_03177 0.39 +0.1 3,319,147 + ECD_03177 0.39 -0.4 3,319,147 + ECD_03177 0.39 +0.2 3,319,147 + ECD_03177 0.39 -0.2 3,319,148 - ECD_03177 0.39 -1.6 3,319,148 - ECD_03177 0.39 -1.1 3,319,148 - ECD_03177 0.39 -0.3 3,319,148 - ECD_03177 0.39 -0.6 3,319,148 - ECD_03177 0.39 +0.2 3,319,148 - ECD_03177 0.39 +0.3 3,319,148 - ECD_03177 0.39 +0.8 3,319,148 - ECD_03177 0.39 -1.0 3,319,148 - ECD_03177 0.39 +0.2 3,319,148 - ECD_03177 0.39 -0.0 3,319,148 - ECD_03177 0.39 -0.1 3,319,148 - ECD_03177 0.39 +0.1 3,319,148 - ECD_03177 0.39 +0.6 3,319,148 - ECD_03177 0.39 +0.3 3,319,179 + ECD_03177 0.41 -0.5 3,319,180 - ECD_03177 0.41 -1.0 3,319,180 - ECD_03177 0.41 -0.2 3,319,180 - ECD_03177 0.41 +0.7 3,319,180 - ECD_03177 0.41 +0.7 3,319,180 - ECD_03177 0.41 +0.1 3,319,302 - ECD_03177 0.49 -0.8 3,319,302 - ECD_03177 0.49 +0.6 3,319,304 + ECD_03177 0.49 +0.3 3,319,305 - ECD_03177 0.49 +0.2 3,319,350 + ECD_03177 0.52 +0.0 3,319,374 - ECD_03177 0.54 -0.2 3,319,416 + ECD_03177 0.57 -0.8 3,319,417 - ECD_03177 0.57 -0.3 3,319,463 + ECD_03177 0.60 +0.4 3,319,607 + ECD_03177 0.70 -0.0 3,319,608 - ECD_03177 0.70 +0.7 3,319,774 - ECD_03177 0.81 -0.3 3,319,960 + -0.0 3,319,988 - -0.3 3,320,015 + -1.0 3,320,058 - +0.4 3,320,320 + ECD_03178 0.22 +0.3 3,320,321 - ECD_03178 0.23 +0.7 3,320,323 + ECD_03178 0.23 +0.6 3,320,343 + ECD_03178 0.24 +0.1 3,320,344 - ECD_03178 0.24 -0.5 3,320,394 + ECD_03178 0.29 -0.4 3,320,394 + ECD_03178 0.29 -0.2 3,320,395 - ECD_03178 0.29 +0.8 3,320,546 + ECD_03178 0.41 +0.8 3,320,546 + ECD_03178 0.41 +0.2 3,320,547 - ECD_03178 0.41 +0.4 3,320,555 - ECD_03178 0.42 +0.0 3,320,555 - ECD_03178 0.42 -0.2 3,320,555 - ECD_03178 0.42 +0.6 3,320,564 - ECD_03178 0.43 -0.1 3,320,635 + ECD_03178 0.49 +0.6 3,320,636 - ECD_03178 0.49 +0.3 3,320,659 + ECD_03178 0.51 -0.5 3,320,660 - ECD_03178 0.51 +0.4 3,320,673 + ECD_03178 0.52 +0.2 3,320,712 + ECD_03178 0.55 -0.5 3,320,713 - ECD_03178 0.55 -0.1 3,320,713 - ECD_03178 0.55 +0.2 3,320,729 - ECD_03178 0.57 -0.3 3,320,729 - ECD_03178 0.57 -0.2 3,320,849 + ECD_03178 0.67 +0.4 3,320,850 - ECD_03178 0.67 +0.4 3,320,850 - ECD_03178 0.67 +0.4 3,320,850 - ECD_03178 0.67 -1.4 3,320,850 - ECD_03178 0.67 +0.3 3,320,862 + ECD_03178 0.68 +0.8 3,320,867 - ECD_03178 0.68 +0.7 3,320,867 - ECD_03178 0.68 -1.5 3,320,867 - ECD_03178 0.68 +0.2 3,321,038 + ECD_03178 0.82 +0.5 3,321,038 + ECD_03178 0.82 +1.1 3,321,038 + ECD_03178 0.82 -0.1 3,321,038 + ECD_03178 0.82 +0.5 3,321,038 + ECD_03178 0.82 -0.2 3,321,038 + ECD_03178 0.82 -0.7 3,321,039 - ECD_03178 0.83 -0.1 3,321,039 - ECD_03178 0.83 -0.5 3,321,039 - ECD_03178 0.83 -0.1 3,321,039 - ECD_03178 0.83 -0.2 3,321,039 - ECD_03178 0.83 +0.2 3,321,082 - ECD_03178 0.86 +0.1 3,321,169 + -1.6 3,321,287 - -0.2 3,321,301 + ECD_03179 0.10 -0.2 3,321,354 + ECD_03179 0.22 -0.5 3,321,354 + ECD_03179 0.22 -0.1 3,321,428 - ECD_03179 0.39 +0.6 3,321,431 + ECD_03179 0.40 +0.1 3,321,431 + ECD_03179 0.40 -0.2 3,321,431 + ECD_03179 0.40 +0.9 3,321,432 - ECD_03179 0.40 -0.3 3,321,432 - ECD_03179 0.40 +0.2 3,321,432 - ECD_03179 0.40 +0.9 3,321,432 - ECD_03179 0.40 -0.6 3,321,432 - ECD_03179 0.40 +0.4 3,321,486 + ECD_03179 0.52 +0.1 3,321,487 - ECD_03179 0.53 -0.9 3,321,522 - ECD_03179 0.61 +0.2 3,321,522 - ECD_03179 0.61 +0.4 3,321,522 - ECD_03179 0.61 +1.0 3,321,523 + ECD_03179 0.61 -0.9 3,321,524 - ECD_03179 0.61 +0.4 3,321,536 + ECD_03179 0.64 +0.5 3,321,537 - ECD_03179 0.64 +0.9 3,321,538 + ECD_03179 0.64 +0.5 3,321,539 - ECD_03179 0.64 +0.5 3,321,575 + ECD_03179 0.73 +0.3 3,321,575 + ECD_03179 0.73 +0.2 3,321,575 + ECD_03179 0.73 -0.4 3,321,575 + ECD_03179 0.73 +0.2 3,321,576 - ECD_03179 0.73 -0.4 3,321,608 + ECD_03179 0.80 -0.2 3,321,608 + ECD_03179 0.80 +0.6 3,321,608 + ECD_03179 0.80 +0.0 3,321,609 - ECD_03179 0.80 +0.4 3,321,609 - ECD_03179 0.80 +0.4 3,321,609 - ECD_03179 0.80 +0.8 3,321,692 + -1.0 3,321,789 + ECD_03180 0.17 -0.0 3,321,790 - ECD_03180 0.17 +0.6 3,321,860 - ECD_03180 0.31 +0.2 3,321,973 + ECD_03180 0.53 +0.1 3,322,043 + ECD_03180 0.67 -0.7 3,322,154 - ECD_03180 0.89 -0.7
Or see this region's nucleotide sequence