Experiment: Bas28
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01439 and ECD_01440 are separated by 344 nucleotides ECD_01440 and ECD_01441 are separated by 55 nucleotides ECD_01441 and ECD_01442 overlap by 8 nucleotides ECD_01442 and ECD_01443 overlap by 4 nucleotides
ECD_01439: ECD_01439 - biofilm-dependent modulation protein, at 1,511,533 to 1,511,748
_01439
ECD_01440: ECD_01440 - lipoyl-dependent Cys-based peroxidase, hydroperoxide resistance; salt-shock inducible membrane protein; peroxiredoxin, at 1,512,093 to 1,512,524
_01440
ECD_01441: ECD_01441 - D,D-dipeptide ABC transporter ATPase, at 1,512,580 to 1,513,506
_01441
ECD_01442: ECD_01442 - D,D-dipeptide ABC transporter ATPase, at 1,513,499 to 1,514,485
_01442
ECD_01443: ECD_01443 - D,D-dipeptide ABC transporter permease, at 1,514,482 to 1,515,378
_01443
Position (kb) 1512
1513
1514 Strain fitness (log2 ratio) -1
0
1
2 at 1512.053 kb on + strand at 1512.629 kb on - strand at 1512.794 kb on + strand, within ECD_01441 at 1513.180 kb on + strand, within ECD_01441 at 1513.290 kb on - strand, within ECD_01441 at 1513.508 kb on + strand at 1513.606 kb on - strand, within ECD_01442 at 1513.730 kb on - strand, within ECD_01442 at 1514.111 kb on + strand, within ECD_01442
Per-strain Table
Position Strand Gene LocusTag Fraction Bas28 remove 1,512,053 + +0.0 1,512,629 - +0.7 1,512,794 + ECD_01441 0.23 -0.3 1,513,180 + ECD_01441 0.65 +0.1 1,513,290 - ECD_01441 0.77 +2.1 1,513,508 + +2.0 1,513,606 - ECD_01442 0.11 -0.0 1,513,730 - ECD_01442 0.23 +0.1 1,514,111 + ECD_01442 0.62 -0.8
Or see this region's nucleotide sequence