Experiment: Bas28
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00652 and ECD_00653 overlap by 8 nucleotides ECD_00653 and ECD_00654 are separated by 8 nucleotides ECD_00654 and ECD_00655 are separated by 22 nucleotides
ECD_00652: ECD_00652 - fused sensory histidine kinase in two-component regulatory system with KdpE: signal sensing protein, at 681,604 to 684,288
_00652
ECD_00653: ECD_00653 - potassium translocating ATPase, subunit C, at 684,281 to 684,853
_00653
ECD_00654: ECD_00654 - potassium translocating ATPase, subunit B, at 684,862 to 686,910
_00654
ECD_00655: ECD_00655 - potassium translocating ATPase, subunit A, at 686,933 to 688,606
_00655
Position (kb) 684
685
686
687 Strain fitness (log2 ratio) -2
-1
0
1 at 683.946 kb on + strand, within ECD_00652 at 683.968 kb on + strand, within ECD_00652 at 684.127 kb on - strand at 684.272 kb on - strand at 684.272 kb on - strand at 684.344 kb on - strand, within ECD_00653 at 684.461 kb on - strand, within ECD_00653 at 684.461 kb on - strand, within ECD_00653 at 684.625 kb on - strand, within ECD_00653 at 684.820 kb on + strand at 684.890 kb on - strand at 684.955 kb on - strand at 684.989 kb on + strand at 685.003 kb on + strand at 685.004 kb on - strand at 685.252 kb on - strand, within ECD_00654 at 685.585 kb on - strand, within ECD_00654 at 685.787 kb on - strand, within ECD_00654 at 685.857 kb on + strand, within ECD_00654 at 686.530 kb on - strand, within ECD_00654 at 686.764 kb on - strand at 686.764 kb on - strand at 686.767 kb on - strand at 686.910 kb on + strand at 687.080 kb on - strand at 687.375 kb on - strand, within ECD_00655 at 687.431 kb on - strand, within ECD_00655 at 687.545 kb on - strand, within ECD_00655
Per-strain Table
Position Strand Gene LocusTag Fraction Bas28 remove 683,946 + ECD_00652 0.87 +0.5 683,968 + ECD_00652 0.88 +1.1 684,127 - -0.4 684,272 - -0.6 684,272 - +0.6 684,344 - ECD_00653 0.11 -2.0 684,461 - ECD_00653 0.31 -1.0 684,461 - ECD_00653 0.31 -0.1 684,625 - ECD_00653 0.60 -0.4 684,820 + +0.8 684,890 - +0.2 684,955 - +0.5 684,989 + -0.2 685,003 + -0.1 685,004 - +0.0 685,252 - ECD_00654 0.19 +0.0 685,585 - ECD_00654 0.35 +0.3 685,787 - ECD_00654 0.45 +1.5 685,857 + ECD_00654 0.49 +0.4 686,530 - ECD_00654 0.81 +0.5 686,764 - +0.1 686,764 - -1.1 686,767 - -0.9 686,910 + -0.3 687,080 - -0.5 687,375 - ECD_00655 0.26 +0.2 687,431 - ECD_00655 0.30 +1.0 687,545 - ECD_00655 0.37 +1.3
Or see this region's nucleotide sequence