Experiment: Bas14
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03752 and ECD_04384 are separated by 189 nucleotides ECD_04384 and ECD_03753 are separated by 111 nucleotides ECD_03753 and ECD_03754 are separated by 11 nucleotides
ECD_03752: ECD_03752 - coproporphyrinogen III oxidase, SAM and NAD(P)H dependent, oxygen-independent, at 3,958,782 to 3,960,155
_03752
ECD_04384: ECD_04384 - small predicted membrane protein, at 3,960,345 to 3,960,455
_04384
ECD_03753: ECD_03753 - fused DNA-binding response regulator in two-component regulatory system with GlnL: response regulator/sigma54 interaction protein, at 3,960,567 to 3,961,976
_03753
ECD_03754: ECD_03754 - sensory histidine kinase in two-component regulatory system with GlnG, at 3,961,988 to 3,963,037
_03754
Position (kb)
3960
3961
3962 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3959.718 kb on + strand, within ECD_03752 at 3959.817 kb on + strand, within ECD_03752 at 3959.820 kb on + strand, within ECD_03752 at 3959.820 kb on + strand, within ECD_03752 at 3959.820 kb on + strand, within ECD_03752 at 3959.821 kb on - strand, within ECD_03752 at 3959.886 kb on - strand, within ECD_03752 at 3959.976 kb on + strand, within ECD_03752 at 3960.049 kb on + strand at 3960.050 kb on - strand at 3960.050 kb on - strand at 3960.108 kb on + strand at 3960.108 kb on + strand at 3960.108 kb on + strand at 3960.108 kb on + strand at 3960.108 kb on + strand at 3960.109 kb on - strand at 3960.109 kb on - strand at 3960.153 kb on + strand at 3960.153 kb on + strand at 3960.153 kb on + strand at 3960.177 kb on - strand at 3960.234 kb on + strand at 3960.438 kb on - strand, within ECD_04384 at 3960.441 kb on + strand, within ECD_04384 at 3960.442 kb on - strand, within ECD_04384 at 3960.497 kb on - strand at 3960.550 kb on + strand at 3960.594 kb on - strand at 3960.645 kb on - strand at 3960.656 kb on + strand at 3960.760 kb on - strand, within ECD_03753 at 3960.798 kb on - strand, within ECD_03753 at 3960.907 kb on - strand, within ECD_03753 at 3960.907 kb on - strand, within ECD_03753 at 3960.972 kb on + strand, within ECD_03753 at 3960.972 kb on + strand, within ECD_03753 at 3960.973 kb on - strand, within ECD_03753 at 3960.973 kb on - strand, within ECD_03753 at 3961.025 kb on + strand, within ECD_03753 at 3961.026 kb on - strand, within ECD_03753 at 3961.103 kb on + strand, within ECD_03753 at 3961.103 kb on + strand, within ECD_03753 at 3961.104 kb on - strand, within ECD_03753 at 3961.247 kb on + strand, within ECD_03753 at 3961.269 kb on + strand, within ECD_03753 at 3961.275 kb on - strand, within ECD_03753 at 3961.313 kb on + strand, within ECD_03753 at 3961.314 kb on - strand, within ECD_03753 at 3961.314 kb on - strand, within ECD_03753 at 3961.379 kb on + strand, within ECD_03753 at 3961.493 kb on + strand, within ECD_03753 at 3961.589 kb on + strand, within ECD_03753 at 3961.589 kb on + strand, within ECD_03753 at 3961.612 kb on + strand, within ECD_03753 at 3961.736 kb on + strand, within ECD_03753 at 3961.736 kb on + strand, within ECD_03753 at 3961.737 kb on - strand, within ECD_03753 at 3961.737 kb on - strand, within ECD_03753 at 3961.770 kb on - strand, within ECD_03753 at 3961.887 kb on - strand at 3961.893 kb on + strand at 3961.940 kb on + strand at 3961.940 kb on + strand at 3961.941 kb on - strand at 3961.962 kb on + strand at 3961.962 kb on + strand at 3961.977 kb on - strand at 3961.977 kb on - strand at 3961.989 kb on + strand at 3962.000 kb on - strand at 3962.008 kb on - strand at 3962.305 kb on + strand, within ECD_03754 at 3962.305 kb on + strand, within ECD_03754 at 3962.367 kb on + strand, within ECD_03754 at 3962.418 kb on - strand, within ECD_03754 at 3962.536 kb on + strand, within ECD_03754 at 3962.536 kb on + strand, within ECD_03754 at 3962.537 kb on - strand, within ECD_03754 at 3962.537 kb on - strand, within ECD_03754 at 3962.539 kb on - strand, within ECD_03754 at 3962.539 kb on - strand, within ECD_03754 at 3962.639 kb on + strand, within ECD_03754 at 3962.672 kb on + strand, within ECD_03754 at 3962.672 kb on + strand, within ECD_03754 at 3962.672 kb on + strand, within ECD_03754 at 3962.672 kb on + strand, within ECD_03754 at 3962.672 kb on + strand, within ECD_03754 at 3962.673 kb on - strand, within ECD_03754 at 3962.673 kb on - strand, within ECD_03754 at 3962.673 kb on - strand, within ECD_03754 at 3962.743 kb on + strand, within ECD_03754 at 3962.744 kb on - strand, within ECD_03754 at 3962.851 kb on + strand, within ECD_03754 at 3962.851 kb on + strand, within ECD_03754 at 3962.855 kb on + strand, within ECD_03754 at 3962.866 kb on - strand, within ECD_03754 at 3962.866 kb on - strand, within ECD_03754
Per-strain Table
Position Strand Gene LocusTag Fraction Bas14 remove 3,959,718 + ECD_03752 0.68 +0.2 3,959,817 + ECD_03752 0.75 -0.4 3,959,820 + ECD_03752 0.76 +1.9 3,959,820 + ECD_03752 0.76 -2.0 3,959,820 + ECD_03752 0.76 -1.6 3,959,821 - ECD_03752 0.76 -0.8 3,959,886 - ECD_03752 0.80 -0.5 3,959,976 + ECD_03752 0.87 -0.8 3,960,049 + +0.7 3,960,050 - -0.5 3,960,050 - -0.7 3,960,108 + -0.7 3,960,108 + +0.2 3,960,108 + -2.1 3,960,108 + -1.2 3,960,108 + +0.9 3,960,109 - -1.0 3,960,109 - -0.5 3,960,153 + -0.1 3,960,153 + -0.4 3,960,153 + +0.2 3,960,177 - -0.1 3,960,234 + +0.6 3,960,438 - ECD_04384 0.84 -0.2 3,960,441 + ECD_04384 0.86 -1.6 3,960,442 - ECD_04384 0.87 +0.4 3,960,497 - -0.3 3,960,550 + +0.3 3,960,594 - -0.7 3,960,645 - -0.6 3,960,656 + -0.3 3,960,760 - ECD_03753 0.14 -0.2 3,960,798 - ECD_03753 0.16 -0.5 3,960,907 - ECD_03753 0.24 +2.0 3,960,907 - ECD_03753 0.24 -0.5 3,960,972 + ECD_03753 0.29 -0.8 3,960,972 + ECD_03753 0.29 +0.6 3,960,973 - ECD_03753 0.29 -0.5 3,960,973 - ECD_03753 0.29 -0.5 3,961,025 + ECD_03753 0.32 -1.0 3,961,026 - ECD_03753 0.33 -0.5 3,961,103 + ECD_03753 0.38 -1.5 3,961,103 + ECD_03753 0.38 -1.1 3,961,104 - ECD_03753 0.38 +0.5 3,961,247 + ECD_03753 0.48 -1.1 3,961,269 + ECD_03753 0.50 -0.2 3,961,275 - ECD_03753 0.50 -0.2 3,961,313 + ECD_03753 0.53 +1.0 3,961,314 - ECD_03753 0.53 -1.0 3,961,314 - ECD_03753 0.53 -0.3 3,961,379 + ECD_03753 0.58 -0.7 3,961,493 + ECD_03753 0.66 -0.2 3,961,589 + ECD_03753 0.72 -0.3 3,961,589 + ECD_03753 0.72 -0.2 3,961,612 + ECD_03753 0.74 +0.3 3,961,736 + ECD_03753 0.83 +0.1 3,961,736 + ECD_03753 0.83 -0.2 3,961,737 - ECD_03753 0.83 -0.9 3,961,737 - ECD_03753 0.83 +0.1 3,961,770 - ECD_03753 0.85 -1.4 3,961,887 - +0.2 3,961,893 + +0.2 3,961,940 + +0.9 3,961,940 + +0.6 3,961,941 - +0.1 3,961,962 + +0.6 3,961,962 + +0.3 3,961,977 - +0.2 3,961,977 - -0.1 3,961,989 + -0.9 3,962,000 - +0.1 3,962,008 - +0.5 3,962,305 + ECD_03754 0.30 -0.4 3,962,305 + ECD_03754 0.30 +0.2 3,962,367 + ECD_03754 0.36 -0.8 3,962,418 - ECD_03754 0.41 +0.1 3,962,536 + ECD_03754 0.52 -1.4 3,962,536 + ECD_03754 0.52 +0.5 3,962,537 - ECD_03754 0.52 +0.5 3,962,537 - ECD_03754 0.52 +0.5 3,962,539 - ECD_03754 0.52 +0.1 3,962,539 - ECD_03754 0.52 +0.3 3,962,639 + ECD_03754 0.62 +0.2 3,962,672 + ECD_03754 0.65 +0.2 3,962,672 + ECD_03754 0.65 -1.1 3,962,672 + ECD_03754 0.65 -0.9 3,962,672 + ECD_03754 0.65 +0.5 3,962,672 + ECD_03754 0.65 -0.2 3,962,673 - ECD_03754 0.65 -0.5 3,962,673 - ECD_03754 0.65 -0.5 3,962,673 - ECD_03754 0.65 -0.3 3,962,743 + ECD_03754 0.72 -0.2 3,962,744 - ECD_03754 0.72 +0.2 3,962,851 + ECD_03754 0.82 -0.5 3,962,851 + ECD_03754 0.82 +0.2 3,962,855 + ECD_03754 0.83 +0.7 3,962,866 - ECD_03754 0.84 -1.5 3,962,866 - ECD_03754 0.84 +0.1
Or see this region's nucleotide sequence