Strain Fitness in Escherichia coli BL21 around ECD_03753

Experiment: Bas14

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03752 and ECD_04384 are separated by 189 nucleotidesECD_04384 and ECD_03753 are separated by 111 nucleotidesECD_03753 and ECD_03754 are separated by 11 nucleotides ECD_03752: ECD_03752 - coproporphyrinogen III oxidase, SAM and NAD(P)H dependent, oxygen-independent, at 3,958,782 to 3,960,155 _03752 ECD_04384: ECD_04384 - small predicted membrane protein, at 3,960,345 to 3,960,455 _04384 ECD_03753: ECD_03753 - fused DNA-binding response regulator in two-component regulatory system with GlnL: response regulator/sigma54 interaction protein, at 3,960,567 to 3,961,976 _03753 ECD_03754: ECD_03754 - sensory histidine kinase in two-component regulatory system with GlnG, at 3,961,988 to 3,963,037 _03754 Position (kb) 3960 3961 3962Strain fitness (log2 ratio) -2 -1 0 1 2at 3959.718 kb on + strand, within ECD_03752at 3959.817 kb on + strand, within ECD_03752at 3959.820 kb on + strand, within ECD_03752at 3959.820 kb on + strand, within ECD_03752at 3959.820 kb on + strand, within ECD_03752at 3959.821 kb on - strand, within ECD_03752at 3959.886 kb on - strand, within ECD_03752at 3959.976 kb on + strand, within ECD_03752at 3960.049 kb on + strandat 3960.050 kb on - strandat 3960.050 kb on - strandat 3960.108 kb on + strandat 3960.108 kb on + strandat 3960.108 kb on + strandat 3960.108 kb on + strandat 3960.108 kb on + strandat 3960.109 kb on - strandat 3960.109 kb on - strandat 3960.153 kb on + strandat 3960.153 kb on + strandat 3960.153 kb on + strandat 3960.177 kb on - strandat 3960.234 kb on + strandat 3960.438 kb on - strand, within ECD_04384at 3960.441 kb on + strand, within ECD_04384at 3960.442 kb on - strand, within ECD_04384at 3960.497 kb on - strandat 3960.550 kb on + strandat 3960.594 kb on - strandat 3960.645 kb on - strandat 3960.656 kb on + strandat 3960.760 kb on - strand, within ECD_03753at 3960.798 kb on - strand, within ECD_03753at 3960.907 kb on - strand, within ECD_03753at 3960.907 kb on - strand, within ECD_03753at 3960.972 kb on + strand, within ECD_03753at 3960.972 kb on + strand, within ECD_03753at 3960.973 kb on - strand, within ECD_03753at 3960.973 kb on - strand, within ECD_03753at 3961.025 kb on + strand, within ECD_03753at 3961.026 kb on - strand, within ECD_03753at 3961.103 kb on + strand, within ECD_03753at 3961.103 kb on + strand, within ECD_03753at 3961.104 kb on - strand, within ECD_03753at 3961.247 kb on + strand, within ECD_03753at 3961.269 kb on + strand, within ECD_03753at 3961.275 kb on - strand, within ECD_03753at 3961.313 kb on + strand, within ECD_03753at 3961.314 kb on - strand, within ECD_03753at 3961.314 kb on - strand, within ECD_03753at 3961.379 kb on + strand, within ECD_03753at 3961.493 kb on + strand, within ECD_03753at 3961.589 kb on + strand, within ECD_03753at 3961.589 kb on + strand, within ECD_03753at 3961.612 kb on + strand, within ECD_03753at 3961.736 kb on + strand, within ECD_03753at 3961.736 kb on + strand, within ECD_03753at 3961.737 kb on - strand, within ECD_03753at 3961.737 kb on - strand, within ECD_03753at 3961.770 kb on - strand, within ECD_03753at 3961.887 kb on - strandat 3961.893 kb on + strandat 3961.940 kb on + strandat 3961.940 kb on + strandat 3961.941 kb on - strandat 3961.962 kb on + strandat 3961.962 kb on + strandat 3961.977 kb on - strandat 3961.977 kb on - strandat 3961.989 kb on + strandat 3962.000 kb on - strandat 3962.008 kb on - strandat 3962.305 kb on + strand, within ECD_03754at 3962.305 kb on + strand, within ECD_03754at 3962.367 kb on + strand, within ECD_03754at 3962.418 kb on - strand, within ECD_03754at 3962.536 kb on + strand, within ECD_03754at 3962.536 kb on + strand, within ECD_03754at 3962.537 kb on - strand, within ECD_03754at 3962.537 kb on - strand, within ECD_03754at 3962.539 kb on - strand, within ECD_03754at 3962.539 kb on - strand, within ECD_03754at 3962.639 kb on + strand, within ECD_03754at 3962.672 kb on + strand, within ECD_03754at 3962.672 kb on + strand, within ECD_03754at 3962.672 kb on + strand, within ECD_03754at 3962.672 kb on + strand, within ECD_03754at 3962.672 kb on + strand, within ECD_03754at 3962.673 kb on - strand, within ECD_03754at 3962.673 kb on - strand, within ECD_03754at 3962.673 kb on - strand, within ECD_03754at 3962.743 kb on + strand, within ECD_03754at 3962.744 kb on - strand, within ECD_03754at 3962.851 kb on + strand, within ECD_03754at 3962.851 kb on + strand, within ECD_03754at 3962.855 kb on + strand, within ECD_03754at 3962.866 kb on - strand, within ECD_03754at 3962.866 kb on - strand, within ECD_03754

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas14
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3,959,718 + ECD_03752 0.68 +0.2
3,959,817 + ECD_03752 0.75 -0.4
3,959,820 + ECD_03752 0.76 +1.9
3,959,820 + ECD_03752 0.76 -2.0
3,959,820 + ECD_03752 0.76 -1.6
3,959,821 - ECD_03752 0.76 -0.8
3,959,886 - ECD_03752 0.80 -0.5
3,959,976 + ECD_03752 0.87 -0.8
3,960,049 + +0.7
3,960,050 - -0.5
3,960,050 - -0.7
3,960,108 + -0.7
3,960,108 + +0.2
3,960,108 + -2.1
3,960,108 + -1.2
3,960,108 + +0.9
3,960,109 - -1.0
3,960,109 - -0.5
3,960,153 + -0.1
3,960,153 + -0.4
3,960,153 + +0.2
3,960,177 - -0.1
3,960,234 + +0.6
3,960,438 - ECD_04384 0.84 -0.2
3,960,441 + ECD_04384 0.86 -1.6
3,960,442 - ECD_04384 0.87 +0.4
3,960,497 - -0.3
3,960,550 + +0.3
3,960,594 - -0.7
3,960,645 - -0.6
3,960,656 + -0.3
3,960,760 - ECD_03753 0.14 -0.2
3,960,798 - ECD_03753 0.16 -0.5
3,960,907 - ECD_03753 0.24 +2.0
3,960,907 - ECD_03753 0.24 -0.5
3,960,972 + ECD_03753 0.29 -0.8
3,960,972 + ECD_03753 0.29 +0.6
3,960,973 - ECD_03753 0.29 -0.5
3,960,973 - ECD_03753 0.29 -0.5
3,961,025 + ECD_03753 0.32 -1.0
3,961,026 - ECD_03753 0.33 -0.5
3,961,103 + ECD_03753 0.38 -1.5
3,961,103 + ECD_03753 0.38 -1.1
3,961,104 - ECD_03753 0.38 +0.5
3,961,247 + ECD_03753 0.48 -1.1
3,961,269 + ECD_03753 0.50 -0.2
3,961,275 - ECD_03753 0.50 -0.2
3,961,313 + ECD_03753 0.53 +1.0
3,961,314 - ECD_03753 0.53 -1.0
3,961,314 - ECD_03753 0.53 -0.3
3,961,379 + ECD_03753 0.58 -0.7
3,961,493 + ECD_03753 0.66 -0.2
3,961,589 + ECD_03753 0.72 -0.3
3,961,589 + ECD_03753 0.72 -0.2
3,961,612 + ECD_03753 0.74 +0.3
3,961,736 + ECD_03753 0.83 +0.1
3,961,736 + ECD_03753 0.83 -0.2
3,961,737 - ECD_03753 0.83 -0.9
3,961,737 - ECD_03753 0.83 +0.1
3,961,770 - ECD_03753 0.85 -1.4
3,961,887 - +0.2
3,961,893 + +0.2
3,961,940 + +0.9
3,961,940 + +0.6
3,961,941 - +0.1
3,961,962 + +0.6
3,961,962 + +0.3
3,961,977 - +0.2
3,961,977 - -0.1
3,961,989 + -0.9
3,962,000 - +0.1
3,962,008 - +0.5
3,962,305 + ECD_03754 0.30 -0.4
3,962,305 + ECD_03754 0.30 +0.2
3,962,367 + ECD_03754 0.36 -0.8
3,962,418 - ECD_03754 0.41 +0.1
3,962,536 + ECD_03754 0.52 -1.4
3,962,536 + ECD_03754 0.52 +0.5
3,962,537 - ECD_03754 0.52 +0.5
3,962,537 - ECD_03754 0.52 +0.5
3,962,539 - ECD_03754 0.52 +0.1
3,962,539 - ECD_03754 0.52 +0.3
3,962,639 + ECD_03754 0.62 +0.2
3,962,672 + ECD_03754 0.65 +0.2
3,962,672 + ECD_03754 0.65 -1.1
3,962,672 + ECD_03754 0.65 -0.9
3,962,672 + ECD_03754 0.65 +0.5
3,962,672 + ECD_03754 0.65 -0.2
3,962,673 - ECD_03754 0.65 -0.5
3,962,673 - ECD_03754 0.65 -0.5
3,962,673 - ECD_03754 0.65 -0.3
3,962,743 + ECD_03754 0.72 -0.2
3,962,744 - ECD_03754 0.72 +0.2
3,962,851 + ECD_03754 0.82 -0.5
3,962,851 + ECD_03754 0.82 +0.2
3,962,855 + ECD_03754 0.83 +0.7
3,962,866 - ECD_03754 0.84 -1.5
3,962,866 - ECD_03754 0.84 +0.1

Or see this region's nucleotide sequence