Strain Fitness in Escherichia coli BL21 around ECD_03594

Experiment: Bas14

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03593 and ECD_03594 are separated by 131 nucleotidesECD_03594 and ECD_03595 overlap by 26 nucleotides ECD_03593: ECD_03593 - tryptophan transporter of low affinity, at 3,779,032 to 3,780,279 _03593 ECD_03594: ECD_03594 - multidrug efflux system protein, at 3,780,411 to 3,781,586 _03594 ECD_03595: ECD_03595 - putative DNA-binding transcriptional regulator, at 3,781,561 to 3,782,520 _03595 Position (kb) 3780 3781 3782Strain fitness (log2 ratio) -2 -1 0 1 2at 3779.412 kb on + strand, within ECD_03593at 3779.413 kb on - strand, within ECD_03593at 3779.413 kb on - strand, within ECD_03593at 3779.413 kb on - strand, within ECD_03593at 3779.484 kb on + strand, within ECD_03593at 3779.557 kb on + strand, within ECD_03593at 3779.603 kb on - strand, within ECD_03593at 3779.603 kb on - strand, within ECD_03593at 3779.603 kb on - strand, within ECD_03593at 3779.611 kb on + strand, within ECD_03593at 3779.611 kb on + strand, within ECD_03593at 3779.614 kb on - strand, within ECD_03593at 3779.614 kb on - strand, within ECD_03593at 3779.614 kb on - strand, within ECD_03593at 3779.703 kb on + strand, within ECD_03593at 3779.704 kb on - strand, within ECD_03593at 3779.704 kb on - strand, within ECD_03593at 3779.723 kb on + strand, within ECD_03593at 3779.752 kb on + strand, within ECD_03593at 3779.753 kb on - strand, within ECD_03593at 3779.753 kb on - strand, within ECD_03593at 3779.767 kb on + strand, within ECD_03593at 3779.768 kb on - strand, within ECD_03593at 3779.784 kb on + strand, within ECD_03593at 3779.905 kb on - strand, within ECD_03593at 3779.909 kb on + strand, within ECD_03593at 3779.909 kb on + strand, within ECD_03593at 3779.909 kb on + strand, within ECD_03593at 3779.909 kb on + strand, within ECD_03593at 3779.910 kb on - strand, within ECD_03593at 3779.910 kb on - strand, within ECD_03593at 3779.910 kb on - strand, within ECD_03593at 3779.910 kb on - strand, within ECD_03593at 3779.910 kb on - strand, within ECD_03593at 3779.910 kb on - strand, within ECD_03593at 3779.910 kb on - strand, within ECD_03593at 3779.957 kb on - strand, within ECD_03593at 3779.973 kb on + strand, within ECD_03593at 3779.974 kb on - strand, within ECD_03593at 3779.983 kb on - strand, within ECD_03593at 3780.044 kb on - strand, within ECD_03593at 3780.044 kb on - strand, within ECD_03593at 3780.070 kb on + strand, within ECD_03593at 3780.117 kb on + strand, within ECD_03593at 3780.118 kb on - strand, within ECD_03593at 3780.219 kb on + strandat 3780.220 kb on - strandat 3780.268 kb on - strandat 3780.268 kb on - strandat 3780.332 kb on + strandat 3780.332 kb on + strandat 3780.332 kb on + strandat 3780.333 kb on - strandat 3780.333 kb on - strandat 3780.372 kb on + strandat 3780.372 kb on + strandat 3780.373 kb on - strandat 3780.373 kb on - strandat 3780.373 kb on - strandat 3780.373 kb on - strandat 3780.389 kb on + strandat 3780.389 kb on + strandat 3780.389 kb on + strandat 3780.389 kb on + strandat 3780.390 kb on - strandat 3780.390 kb on - strandat 3780.406 kb on - strandat 3780.431 kb on + strandat 3780.431 kb on + strandat 3780.431 kb on + strandat 3780.432 kb on - strandat 3780.448 kb on + strandat 3780.449 kb on - strandat 3780.449 kb on - strandat 3780.449 kb on - strandat 3780.470 kb on + strandat 3780.470 kb on + strandat 3780.470 kb on + strandat 3780.470 kb on + strandat 3780.470 kb on + strandat 3780.470 kb on + strandat 3780.471 kb on - strandat 3780.471 kb on - strandat 3780.471 kb on - strandat 3780.474 kb on + strandat 3780.474 kb on + strandat 3780.475 kb on - strandat 3780.475 kb on - strandat 3780.475 kb on - strandat 3780.487 kb on + strandat 3780.533 kb on + strand, within ECD_03594at 3780.548 kb on - strand, within ECD_03594at 3780.549 kb on + strand, within ECD_03594at 3780.550 kb on - strand, within ECD_03594at 3780.578 kb on - strand, within ECD_03594at 3780.578 kb on - strand, within ECD_03594at 3780.644 kb on + strand, within ECD_03594at 3780.644 kb on + strand, within ECD_03594at 3780.644 kb on + strand, within ECD_03594at 3780.644 kb on + strand, within ECD_03594at 3780.644 kb on + strand, within ECD_03594at 3780.645 kb on - strand, within ECD_03594at 3780.645 kb on - strand, within ECD_03594at 3780.689 kb on - strand, within ECD_03594at 3780.689 kb on - strand, within ECD_03594at 3780.710 kb on - strand, within ECD_03594at 3780.735 kb on + strand, within ECD_03594at 3780.735 kb on + strand, within ECD_03594at 3780.735 kb on + strand, within ECD_03594at 3780.735 kb on + strand, within ECD_03594at 3780.736 kb on - strand, within ECD_03594at 3780.736 kb on - strand, within ECD_03594at 3780.736 kb on - strand, within ECD_03594at 3780.736 kb on - strand, within ECD_03594at 3780.736 kb on - strand, within ECD_03594at 3780.736 kb on - strand, within ECD_03594at 3780.736 kb on - strand, within ECD_03594at 3780.802 kb on + strand, within ECD_03594at 3780.803 kb on - strand, within ECD_03594at 3780.813 kb on - strand, within ECD_03594at 3780.813 kb on - strand, within ECD_03594at 3780.815 kb on + strand, within ECD_03594at 3780.815 kb on + strand, within ECD_03594at 3780.816 kb on - strand, within ECD_03594at 3780.835 kb on + strand, within ECD_03594at 3780.860 kb on + strand, within ECD_03594at 3780.861 kb on - strand, within ECD_03594at 3780.861 kb on - strand, within ECD_03594at 3780.867 kb on - strand, within ECD_03594at 3780.939 kb on - strand, within ECD_03594at 3780.995 kb on + strand, within ECD_03594at 3781.038 kb on - strand, within ECD_03594at 3781.080 kb on - strand, within ECD_03594at 3781.080 kb on - strand, within ECD_03594at 3781.128 kb on + strand, within ECD_03594at 3781.214 kb on + strand, within ECD_03594at 3781.215 kb on - strand, within ECD_03594at 3781.241 kb on - strand, within ECD_03594at 3781.241 kb on - strand, within ECD_03594at 3781.402 kb on + strand, within ECD_03594at 3781.402 kb on + strand, within ECD_03594at 3781.403 kb on - strand, within ECD_03594at 3781.403 kb on - strand, within ECD_03594at 3781.403 kb on - strand, within ECD_03594at 3781.403 kb on - strand, within ECD_03594at 3781.407 kb on - strand, within ECD_03594at 3781.407 kb on - strand, within ECD_03594at 3781.475 kb on + strandat 3781.476 kb on - strandat 3781.476 kb on - strandat 3781.502 kb on + strandat 3781.508 kb on - strandat 3781.526 kb on + strandat 3781.526 kb on + strandat 3781.526 kb on + strandat 3781.680 kb on + strand, within ECD_03595at 3781.822 kb on - strand, within ECD_03595at 3781.896 kb on + strand, within ECD_03595at 3781.897 kb on - strand, within ECD_03595at 3781.897 kb on - strand, within ECD_03595at 3781.897 kb on - strand, within ECD_03595at 3781.918 kb on + strand, within ECD_03595at 3781.918 kb on + strand, within ECD_03595at 3781.918 kb on + strand, within ECD_03595at 3781.918 kb on + strand, within ECD_03595at 3781.919 kb on - strand, within ECD_03595at 3781.949 kb on + strand, within ECD_03595at 3781.950 kb on - strand, within ECD_03595at 3781.953 kb on + strand, within ECD_03595at 3781.953 kb on + strand, within ECD_03595at 3781.954 kb on - strand, within ECD_03595at 3781.954 kb on - strand, within ECD_03595at 3781.973 kb on + strand, within ECD_03595at 3781.974 kb on - strand, within ECD_03595at 3781.974 kb on - strand, within ECD_03595at 3782.049 kb on - strand, within ECD_03595at 3782.074 kb on + strand, within ECD_03595at 3782.074 kb on + strand, within ECD_03595at 3782.075 kb on - strand, within ECD_03595at 3782.088 kb on + strand, within ECD_03595at 3782.096 kb on + strand, within ECD_03595at 3782.096 kb on + strand, within ECD_03595at 3782.097 kb on - strand, within ECD_03595at 3782.097 kb on - strand, within ECD_03595at 3782.163 kb on - strand, within ECD_03595at 3782.163 kb on - strand, within ECD_03595at 3782.176 kb on - strand, within ECD_03595at 3782.176 kb on - strand, within ECD_03595at 3782.225 kb on + strand, within ECD_03595at 3782.226 kb on - strand, within ECD_03595at 3782.256 kb on + strand, within ECD_03595at 3782.257 kb on - strand, within ECD_03595at 3782.257 kb on - strand, within ECD_03595at 3782.316 kb on - strand, within ECD_03595at 3782.335 kb on + strand, within ECD_03595at 3782.345 kb on - strand, within ECD_03595at 3782.347 kb on + strand, within ECD_03595at 3782.348 kb on - strand, within ECD_03595at 3782.348 kb on - strand, within ECD_03595at 3782.430 kb on + strandat 3782.431 kb on - strandat 3782.431 kb on - strandat 3782.461 kb on - strandat 3782.530 kb on - strandat 3782.575 kb on + strandat 3782.575 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas14
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3,779,412 + ECD_03593 0.30 -0.4
3,779,413 - ECD_03593 0.31 +0.3
3,779,413 - ECD_03593 0.31 +0.0
3,779,413 - ECD_03593 0.31 -0.4
3,779,484 + ECD_03593 0.36 -0.3
3,779,557 + ECD_03593 0.42 +0.7
3,779,603 - ECD_03593 0.46 +0.7
3,779,603 - ECD_03593 0.46 +0.9
3,779,603 - ECD_03593 0.46 -0.1
3,779,611 + ECD_03593 0.46 -0.0
3,779,611 + ECD_03593 0.46 +0.1
3,779,614 - ECD_03593 0.47 -1.1
3,779,614 - ECD_03593 0.47 +0.8
3,779,614 - ECD_03593 0.47 +1.0
3,779,703 + ECD_03593 0.54 -0.7
3,779,704 - ECD_03593 0.54 +0.3
3,779,704 - ECD_03593 0.54 +0.4
3,779,723 + ECD_03593 0.55 -0.6
3,779,752 + ECD_03593 0.58 -0.2
3,779,753 - ECD_03593 0.58 -0.1
3,779,753 - ECD_03593 0.58 +0.3
3,779,767 + ECD_03593 0.59 +0.4
3,779,768 - ECD_03593 0.59 -0.3
3,779,784 + ECD_03593 0.60 +0.5
3,779,905 - ECD_03593 0.70 -0.3
3,779,909 + ECD_03593 0.70 +0.3
3,779,909 + ECD_03593 0.70 +0.6
3,779,909 + ECD_03593 0.70 -0.2
3,779,909 + ECD_03593 0.70 -0.3
3,779,910 - ECD_03593 0.70 -0.2
3,779,910 - ECD_03593 0.70 +0.2
3,779,910 - ECD_03593 0.70 -0.5
3,779,910 - ECD_03593 0.70 +0.5
3,779,910 - ECD_03593 0.70 +0.2
3,779,910 - ECD_03593 0.70 -0.4
3,779,910 - ECD_03593 0.70 +0.9
3,779,957 - ECD_03593 0.74 -0.3
3,779,973 + ECD_03593 0.75 -0.1
3,779,974 - ECD_03593 0.75 +1.3
3,779,983 - ECD_03593 0.76 -0.1
3,780,044 - ECD_03593 0.81 -0.5
3,780,044 - ECD_03593 0.81 -1.6
3,780,070 + ECD_03593 0.83 -0.4
3,780,117 + ECD_03593 0.87 -0.6
3,780,118 - ECD_03593 0.87 +0.4
3,780,219 + -0.3
3,780,220 - -1.4
3,780,268 - +0.1
3,780,268 - -0.1
3,780,332 + -0.2
3,780,332 + -0.5
3,780,332 + +0.6
3,780,333 - -0.1
3,780,333 - -1.5
3,780,372 + -0.1
3,780,372 + +0.1
3,780,373 - -0.5
3,780,373 - +0.8
3,780,373 - -0.5
3,780,373 - +0.1
3,780,389 + -0.2
3,780,389 + -0.1
3,780,389 + -0.3
3,780,389 + -0.2
3,780,390 - -0.2
3,780,390 - -0.5
3,780,406 - +0.0
3,780,431 + -0.1
3,780,431 + -0.2
3,780,431 + -0.3
3,780,432 - +0.3
3,780,448 + +0.2
3,780,449 - +0.4
3,780,449 - +0.1
3,780,449 - +0.2
3,780,470 + -2.5
3,780,470 + -0.6
3,780,470 + +0.3
3,780,470 + -1.1
3,780,470 + -0.4
3,780,470 + -1.3
3,780,471 - -0.1
3,780,471 - +0.1
3,780,471 - +0.1
3,780,474 + +0.0
3,780,474 + +0.4
3,780,475 - -0.9
3,780,475 - -0.0
3,780,475 - -0.1
3,780,487 + +0.5
3,780,533 + ECD_03594 0.10 +1.0
3,780,548 - ECD_03594 0.12 -0.7
3,780,549 + ECD_03594 0.12 +0.7
3,780,550 - ECD_03594 0.12 -0.0
3,780,578 - ECD_03594 0.14 -0.8
3,780,578 - ECD_03594 0.14 +0.3
3,780,644 + ECD_03594 0.20 +1.0
3,780,644 + ECD_03594 0.20 -0.1
3,780,644 + ECD_03594 0.20 +0.4
3,780,644 + ECD_03594 0.20 -0.5
3,780,644 + ECD_03594 0.20 +0.9
3,780,645 - ECD_03594 0.20 +0.4
3,780,645 - ECD_03594 0.20 +0.5
3,780,689 - ECD_03594 0.24 -0.5
3,780,689 - ECD_03594 0.24 -0.1
3,780,710 - ECD_03594 0.25 +0.3
3,780,735 + ECD_03594 0.28 +0.1
3,780,735 + ECD_03594 0.28 -0.4
3,780,735 + ECD_03594 0.28 -0.3
3,780,735 + ECD_03594 0.28 +0.9
3,780,736 - ECD_03594 0.28 +0.5
3,780,736 - ECD_03594 0.28 +0.5
3,780,736 - ECD_03594 0.28 +0.2
3,780,736 - ECD_03594 0.28 +0.7
3,780,736 - ECD_03594 0.28 +0.0
3,780,736 - ECD_03594 0.28 +0.3
3,780,736 - ECD_03594 0.28 +0.2
3,780,802 + ECD_03594 0.33 +0.2
3,780,803 - ECD_03594 0.33 +1.9
3,780,813 - ECD_03594 0.34 +0.2
3,780,813 - ECD_03594 0.34 +0.9
3,780,815 + ECD_03594 0.34 +0.9
3,780,815 + ECD_03594 0.34 +0.8
3,780,816 - ECD_03594 0.34 +0.3
3,780,835 + ECD_03594 0.36 -0.3
3,780,860 + ECD_03594 0.38 -0.1
3,780,861 - ECD_03594 0.38 -0.9
3,780,861 - ECD_03594 0.38 +0.1
3,780,867 - ECD_03594 0.39 +1.1
3,780,939 - ECD_03594 0.45 -0.2
3,780,995 + ECD_03594 0.50 +0.1
3,781,038 - ECD_03594 0.53 -0.1
3,781,080 - ECD_03594 0.57 +0.8
3,781,080 - ECD_03594 0.57 +0.1
3,781,128 + ECD_03594 0.61 +0.4
3,781,214 + ECD_03594 0.68 +0.4
3,781,215 - ECD_03594 0.68 -0.1
3,781,241 - ECD_03594 0.71 -0.2
3,781,241 - ECD_03594 0.71 +1.3
3,781,402 + ECD_03594 0.84 +0.5
3,781,402 + ECD_03594 0.84 -0.5
3,781,403 - ECD_03594 0.84 +0.1
3,781,403 - ECD_03594 0.84 +0.4
3,781,403 - ECD_03594 0.84 +0.5
3,781,403 - ECD_03594 0.84 +0.2
3,781,407 - ECD_03594 0.85 +1.4
3,781,407 - ECD_03594 0.85 +0.2
3,781,475 + +0.4
3,781,476 - +0.2
3,781,476 - +0.2
3,781,502 + +0.0
3,781,508 - +0.6
3,781,526 + +0.3
3,781,526 + -0.6
3,781,526 + -0.4
3,781,680 + ECD_03595 0.12 +0.3
3,781,822 - ECD_03595 0.27 +0.3
3,781,896 + ECD_03595 0.35 +0.1
3,781,897 - ECD_03595 0.35 +0.3
3,781,897 - ECD_03595 0.35 +0.1
3,781,897 - ECD_03595 0.35 +0.5
3,781,918 + ECD_03595 0.37 -1.0
3,781,918 + ECD_03595 0.37 -0.1
3,781,918 + ECD_03595 0.37 +0.0
3,781,918 + ECD_03595 0.37 +0.3
3,781,919 - ECD_03595 0.37 +0.7
3,781,949 + ECD_03595 0.40 +0.0
3,781,950 - ECD_03595 0.41 -0.2
3,781,953 + ECD_03595 0.41 +0.7
3,781,953 + ECD_03595 0.41 -0.6
3,781,954 - ECD_03595 0.41 -0.3
3,781,954 - ECD_03595 0.41 +0.1
3,781,973 + ECD_03595 0.43 +0.0
3,781,974 - ECD_03595 0.43 +0.2
3,781,974 - ECD_03595 0.43 -0.4
3,782,049 - ECD_03595 0.51 +0.5
3,782,074 + ECD_03595 0.53 +0.0
3,782,074 + ECD_03595 0.53 -0.9
3,782,075 - ECD_03595 0.54 -0.8
3,782,088 + ECD_03595 0.55 -0.1
3,782,096 + ECD_03595 0.56 -0.7
3,782,096 + ECD_03595 0.56 +0.2
3,782,097 - ECD_03595 0.56 -0.5
3,782,097 - ECD_03595 0.56 +0.2
3,782,163 - ECD_03595 0.63 +0.7
3,782,163 - ECD_03595 0.63 -0.4
3,782,176 - ECD_03595 0.64 -0.2
3,782,176 - ECD_03595 0.64 +0.9
3,782,225 + ECD_03595 0.69 -0.9
3,782,226 - ECD_03595 0.69 +0.2
3,782,256 + ECD_03595 0.72 -1.7
3,782,257 - ECD_03595 0.72 -0.4
3,782,257 - ECD_03595 0.72 +0.4
3,782,316 - ECD_03595 0.79 +0.5
3,782,335 + ECD_03595 0.81 -0.1
3,782,345 - ECD_03595 0.82 +0.2
3,782,347 + ECD_03595 0.82 +0.5
3,782,348 - ECD_03595 0.82 +0.3
3,782,348 - ECD_03595 0.82 -0.0
3,782,430 + +0.2
3,782,431 - -0.6
3,782,431 - +0.6
3,782,461 - -0.5
3,782,530 - +0.5
3,782,575 + -0.2
3,782,575 + +0.6

Or see this region's nucleotide sequence