Experiment: Bas14
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03593 and ECD_03594 are separated by 131 nucleotides ECD_03594 and ECD_03595 overlap by 26 nucleotides
ECD_03593: ECD_03593 - tryptophan transporter of low affinity, at 3,779,032 to 3,780,279
_03593
ECD_03594: ECD_03594 - multidrug efflux system protein, at 3,780,411 to 3,781,586
_03594
ECD_03595: ECD_03595 - putative DNA-binding transcriptional regulator, at 3,781,561 to 3,782,520
_03595
Position (kb)
3780
3781
3782 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3779.412 kb on + strand, within ECD_03593 at 3779.413 kb on - strand, within ECD_03593 at 3779.413 kb on - strand, within ECD_03593 at 3779.413 kb on - strand, within ECD_03593 at 3779.484 kb on + strand, within ECD_03593 at 3779.557 kb on + strand, within ECD_03593 at 3779.603 kb on - strand, within ECD_03593 at 3779.603 kb on - strand, within ECD_03593 at 3779.603 kb on - strand, within ECD_03593 at 3779.611 kb on + strand, within ECD_03593 at 3779.611 kb on + strand, within ECD_03593 at 3779.614 kb on - strand, within ECD_03593 at 3779.614 kb on - strand, within ECD_03593 at 3779.614 kb on - strand, within ECD_03593 at 3779.703 kb on + strand, within ECD_03593 at 3779.704 kb on - strand, within ECD_03593 at 3779.704 kb on - strand, within ECD_03593 at 3779.723 kb on + strand, within ECD_03593 at 3779.752 kb on + strand, within ECD_03593 at 3779.753 kb on - strand, within ECD_03593 at 3779.753 kb on - strand, within ECD_03593 at 3779.767 kb on + strand, within ECD_03593 at 3779.768 kb on - strand, within ECD_03593 at 3779.784 kb on + strand, within ECD_03593 at 3779.905 kb on - strand, within ECD_03593 at 3779.909 kb on + strand, within ECD_03593 at 3779.909 kb on + strand, within ECD_03593 at 3779.909 kb on + strand, within ECD_03593 at 3779.909 kb on + strand, within ECD_03593 at 3779.910 kb on - strand, within ECD_03593 at 3779.910 kb on - strand, within ECD_03593 at 3779.910 kb on - strand, within ECD_03593 at 3779.910 kb on - strand, within ECD_03593 at 3779.910 kb on - strand, within ECD_03593 at 3779.910 kb on - strand, within ECD_03593 at 3779.910 kb on - strand, within ECD_03593 at 3779.957 kb on - strand, within ECD_03593 at 3779.973 kb on + strand, within ECD_03593 at 3779.974 kb on - strand, within ECD_03593 at 3779.983 kb on - strand, within ECD_03593 at 3780.044 kb on - strand, within ECD_03593 at 3780.044 kb on - strand, within ECD_03593 at 3780.070 kb on + strand, within ECD_03593 at 3780.117 kb on + strand, within ECD_03593 at 3780.118 kb on - strand, within ECD_03593 at 3780.219 kb on + strand at 3780.220 kb on - strand at 3780.268 kb on - strand at 3780.268 kb on - strand at 3780.332 kb on + strand at 3780.332 kb on + strand at 3780.332 kb on + strand at 3780.333 kb on - strand at 3780.333 kb on - strand at 3780.372 kb on + strand at 3780.372 kb on + strand at 3780.373 kb on - strand at 3780.373 kb on - strand at 3780.373 kb on - strand at 3780.373 kb on - strand at 3780.389 kb on + strand at 3780.389 kb on + strand at 3780.389 kb on + strand at 3780.389 kb on + strand at 3780.390 kb on - strand at 3780.390 kb on - strand at 3780.406 kb on - strand at 3780.431 kb on + strand at 3780.431 kb on + strand at 3780.431 kb on + strand at 3780.432 kb on - strand at 3780.448 kb on + strand at 3780.449 kb on - strand at 3780.449 kb on - strand at 3780.449 kb on - strand at 3780.470 kb on + strand at 3780.470 kb on + strand at 3780.470 kb on + strand at 3780.470 kb on + strand at 3780.470 kb on + strand at 3780.470 kb on + strand at 3780.471 kb on - strand at 3780.471 kb on - strand at 3780.471 kb on - strand at 3780.474 kb on + strand at 3780.474 kb on + strand at 3780.475 kb on - strand at 3780.475 kb on - strand at 3780.475 kb on - strand at 3780.487 kb on + strand at 3780.533 kb on + strand, within ECD_03594 at 3780.548 kb on - strand, within ECD_03594 at 3780.549 kb on + strand, within ECD_03594 at 3780.550 kb on - strand, within ECD_03594 at 3780.578 kb on - strand, within ECD_03594 at 3780.578 kb on - strand, within ECD_03594 at 3780.644 kb on + strand, within ECD_03594 at 3780.644 kb on + strand, within ECD_03594 at 3780.644 kb on + strand, within ECD_03594 at 3780.644 kb on + strand, within ECD_03594 at 3780.644 kb on + strand, within ECD_03594 at 3780.645 kb on - strand, within ECD_03594 at 3780.645 kb on - strand, within ECD_03594 at 3780.689 kb on - strand, within ECD_03594 at 3780.689 kb on - strand, within ECD_03594 at 3780.710 kb on - strand, within ECD_03594 at 3780.735 kb on + strand, within ECD_03594 at 3780.735 kb on + strand, within ECD_03594 at 3780.735 kb on + strand, within ECD_03594 at 3780.735 kb on + strand, within ECD_03594 at 3780.736 kb on - strand, within ECD_03594 at 3780.736 kb on - strand, within ECD_03594 at 3780.736 kb on - strand, within ECD_03594 at 3780.736 kb on - strand, within ECD_03594 at 3780.736 kb on - strand, within ECD_03594 at 3780.736 kb on - strand, within ECD_03594 at 3780.736 kb on - strand, within ECD_03594 at 3780.802 kb on + strand, within ECD_03594 at 3780.803 kb on - strand, within ECD_03594 at 3780.813 kb on - strand, within ECD_03594 at 3780.813 kb on - strand, within ECD_03594 at 3780.815 kb on + strand, within ECD_03594 at 3780.815 kb on + strand, within ECD_03594 at 3780.816 kb on - strand, within ECD_03594 at 3780.835 kb on + strand, within ECD_03594 at 3780.860 kb on + strand, within ECD_03594 at 3780.861 kb on - strand, within ECD_03594 at 3780.861 kb on - strand, within ECD_03594 at 3780.867 kb on - strand, within ECD_03594 at 3780.939 kb on - strand, within ECD_03594 at 3780.995 kb on + strand, within ECD_03594 at 3781.038 kb on - strand, within ECD_03594 at 3781.080 kb on - strand, within ECD_03594 at 3781.080 kb on - strand, within ECD_03594 at 3781.128 kb on + strand, within ECD_03594 at 3781.214 kb on + strand, within ECD_03594 at 3781.215 kb on - strand, within ECD_03594 at 3781.241 kb on - strand, within ECD_03594 at 3781.241 kb on - strand, within ECD_03594 at 3781.402 kb on + strand, within ECD_03594 at 3781.402 kb on + strand, within ECD_03594 at 3781.403 kb on - strand, within ECD_03594 at 3781.403 kb on - strand, within ECD_03594 at 3781.403 kb on - strand, within ECD_03594 at 3781.403 kb on - strand, within ECD_03594 at 3781.407 kb on - strand, within ECD_03594 at 3781.407 kb on - strand, within ECD_03594 at 3781.475 kb on + strand at 3781.476 kb on - strand at 3781.476 kb on - strand at 3781.502 kb on + strand at 3781.508 kb on - strand at 3781.526 kb on + strand at 3781.526 kb on + strand at 3781.526 kb on + strand at 3781.680 kb on + strand, within ECD_03595 at 3781.822 kb on - strand, within ECD_03595 at 3781.896 kb on + strand, within ECD_03595 at 3781.897 kb on - strand, within ECD_03595 at 3781.897 kb on - strand, within ECD_03595 at 3781.897 kb on - strand, within ECD_03595 at 3781.918 kb on + strand, within ECD_03595 at 3781.918 kb on + strand, within ECD_03595 at 3781.918 kb on + strand, within ECD_03595 at 3781.918 kb on + strand, within ECD_03595 at 3781.919 kb on - strand, within ECD_03595 at 3781.949 kb on + strand, within ECD_03595 at 3781.950 kb on - strand, within ECD_03595 at 3781.953 kb on + strand, within ECD_03595 at 3781.953 kb on + strand, within ECD_03595 at 3781.954 kb on - strand, within ECD_03595 at 3781.954 kb on - strand, within ECD_03595 at 3781.973 kb on + strand, within ECD_03595 at 3781.974 kb on - strand, within ECD_03595 at 3781.974 kb on - strand, within ECD_03595 at 3782.049 kb on - strand, within ECD_03595 at 3782.074 kb on + strand, within ECD_03595 at 3782.074 kb on + strand, within ECD_03595 at 3782.075 kb on - strand, within ECD_03595 at 3782.088 kb on + strand, within ECD_03595 at 3782.096 kb on + strand, within ECD_03595 at 3782.096 kb on + strand, within ECD_03595 at 3782.097 kb on - strand, within ECD_03595 at 3782.097 kb on - strand, within ECD_03595 at 3782.163 kb on - strand, within ECD_03595 at 3782.163 kb on - strand, within ECD_03595 at 3782.176 kb on - strand, within ECD_03595 at 3782.176 kb on - strand, within ECD_03595 at 3782.225 kb on + strand, within ECD_03595 at 3782.226 kb on - strand, within ECD_03595 at 3782.256 kb on + strand, within ECD_03595 at 3782.257 kb on - strand, within ECD_03595 at 3782.257 kb on - strand, within ECD_03595 at 3782.316 kb on - strand, within ECD_03595 at 3782.335 kb on + strand, within ECD_03595 at 3782.345 kb on - strand, within ECD_03595 at 3782.347 kb on + strand, within ECD_03595 at 3782.348 kb on - strand, within ECD_03595 at 3782.348 kb on - strand, within ECD_03595 at 3782.430 kb on + strand at 3782.431 kb on - strand at 3782.431 kb on - strand at 3782.461 kb on - strand at 3782.530 kb on - strand at 3782.575 kb on + strand at 3782.575 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas14 remove 3,779,412 + ECD_03593 0.30 -0.4 3,779,413 - ECD_03593 0.31 +0.3 3,779,413 - ECD_03593 0.31 +0.0 3,779,413 - ECD_03593 0.31 -0.4 3,779,484 + ECD_03593 0.36 -0.3 3,779,557 + ECD_03593 0.42 +0.7 3,779,603 - ECD_03593 0.46 +0.7 3,779,603 - ECD_03593 0.46 +0.9 3,779,603 - ECD_03593 0.46 -0.1 3,779,611 + ECD_03593 0.46 -0.0 3,779,611 + ECD_03593 0.46 +0.1 3,779,614 - ECD_03593 0.47 -1.1 3,779,614 - ECD_03593 0.47 +0.8 3,779,614 - ECD_03593 0.47 +1.0 3,779,703 + ECD_03593 0.54 -0.7 3,779,704 - ECD_03593 0.54 +0.3 3,779,704 - ECD_03593 0.54 +0.4 3,779,723 + ECD_03593 0.55 -0.6 3,779,752 + ECD_03593 0.58 -0.2 3,779,753 - ECD_03593 0.58 -0.1 3,779,753 - ECD_03593 0.58 +0.3 3,779,767 + ECD_03593 0.59 +0.4 3,779,768 - ECD_03593 0.59 -0.3 3,779,784 + ECD_03593 0.60 +0.5 3,779,905 - ECD_03593 0.70 -0.3 3,779,909 + ECD_03593 0.70 +0.3 3,779,909 + ECD_03593 0.70 +0.6 3,779,909 + ECD_03593 0.70 -0.2 3,779,909 + ECD_03593 0.70 -0.3 3,779,910 - ECD_03593 0.70 -0.2 3,779,910 - ECD_03593 0.70 +0.2 3,779,910 - ECD_03593 0.70 -0.5 3,779,910 - ECD_03593 0.70 +0.5 3,779,910 - ECD_03593 0.70 +0.2 3,779,910 - ECD_03593 0.70 -0.4 3,779,910 - ECD_03593 0.70 +0.9 3,779,957 - ECD_03593 0.74 -0.3 3,779,973 + ECD_03593 0.75 -0.1 3,779,974 - ECD_03593 0.75 +1.3 3,779,983 - ECD_03593 0.76 -0.1 3,780,044 - ECD_03593 0.81 -0.5 3,780,044 - ECD_03593 0.81 -1.6 3,780,070 + ECD_03593 0.83 -0.4 3,780,117 + ECD_03593 0.87 -0.6 3,780,118 - ECD_03593 0.87 +0.4 3,780,219 + -0.3 3,780,220 - -1.4 3,780,268 - +0.1 3,780,268 - -0.1 3,780,332 + -0.2 3,780,332 + -0.5 3,780,332 + +0.6 3,780,333 - -0.1 3,780,333 - -1.5 3,780,372 + -0.1 3,780,372 + +0.1 3,780,373 - -0.5 3,780,373 - +0.8 3,780,373 - -0.5 3,780,373 - +0.1 3,780,389 + -0.2 3,780,389 + -0.1 3,780,389 + -0.3 3,780,389 + -0.2 3,780,390 - -0.2 3,780,390 - -0.5 3,780,406 - +0.0 3,780,431 + -0.1 3,780,431 + -0.2 3,780,431 + -0.3 3,780,432 - +0.3 3,780,448 + +0.2 3,780,449 - +0.4 3,780,449 - +0.1 3,780,449 - +0.2 3,780,470 + -2.5 3,780,470 + -0.6 3,780,470 + +0.3 3,780,470 + -1.1 3,780,470 + -0.4 3,780,470 + -1.3 3,780,471 - -0.1 3,780,471 - +0.1 3,780,471 - +0.1 3,780,474 + +0.0 3,780,474 + +0.4 3,780,475 - -0.9 3,780,475 - -0.0 3,780,475 - -0.1 3,780,487 + +0.5 3,780,533 + ECD_03594 0.10 +1.0 3,780,548 - ECD_03594 0.12 -0.7 3,780,549 + ECD_03594 0.12 +0.7 3,780,550 - ECD_03594 0.12 -0.0 3,780,578 - ECD_03594 0.14 -0.8 3,780,578 - ECD_03594 0.14 +0.3 3,780,644 + ECD_03594 0.20 +1.0 3,780,644 + ECD_03594 0.20 -0.1 3,780,644 + ECD_03594 0.20 +0.4 3,780,644 + ECD_03594 0.20 -0.5 3,780,644 + ECD_03594 0.20 +0.9 3,780,645 - ECD_03594 0.20 +0.4 3,780,645 - ECD_03594 0.20 +0.5 3,780,689 - ECD_03594 0.24 -0.5 3,780,689 - ECD_03594 0.24 -0.1 3,780,710 - ECD_03594 0.25 +0.3 3,780,735 + ECD_03594 0.28 +0.1 3,780,735 + ECD_03594 0.28 -0.4 3,780,735 + ECD_03594 0.28 -0.3 3,780,735 + ECD_03594 0.28 +0.9 3,780,736 - ECD_03594 0.28 +0.5 3,780,736 - ECD_03594 0.28 +0.5 3,780,736 - ECD_03594 0.28 +0.2 3,780,736 - ECD_03594 0.28 +0.7 3,780,736 - ECD_03594 0.28 +0.0 3,780,736 - ECD_03594 0.28 +0.3 3,780,736 - ECD_03594 0.28 +0.2 3,780,802 + ECD_03594 0.33 +0.2 3,780,803 - ECD_03594 0.33 +1.9 3,780,813 - ECD_03594 0.34 +0.2 3,780,813 - ECD_03594 0.34 +0.9 3,780,815 + ECD_03594 0.34 +0.9 3,780,815 + ECD_03594 0.34 +0.8 3,780,816 - ECD_03594 0.34 +0.3 3,780,835 + ECD_03594 0.36 -0.3 3,780,860 + ECD_03594 0.38 -0.1 3,780,861 - ECD_03594 0.38 -0.9 3,780,861 - ECD_03594 0.38 +0.1 3,780,867 - ECD_03594 0.39 +1.1 3,780,939 - ECD_03594 0.45 -0.2 3,780,995 + ECD_03594 0.50 +0.1 3,781,038 - ECD_03594 0.53 -0.1 3,781,080 - ECD_03594 0.57 +0.8 3,781,080 - ECD_03594 0.57 +0.1 3,781,128 + ECD_03594 0.61 +0.4 3,781,214 + ECD_03594 0.68 +0.4 3,781,215 - ECD_03594 0.68 -0.1 3,781,241 - ECD_03594 0.71 -0.2 3,781,241 - ECD_03594 0.71 +1.3 3,781,402 + ECD_03594 0.84 +0.5 3,781,402 + ECD_03594 0.84 -0.5 3,781,403 - ECD_03594 0.84 +0.1 3,781,403 - ECD_03594 0.84 +0.4 3,781,403 - ECD_03594 0.84 +0.5 3,781,403 - ECD_03594 0.84 +0.2 3,781,407 - ECD_03594 0.85 +1.4 3,781,407 - ECD_03594 0.85 +0.2 3,781,475 + +0.4 3,781,476 - +0.2 3,781,476 - +0.2 3,781,502 + +0.0 3,781,508 - +0.6 3,781,526 + +0.3 3,781,526 + -0.6 3,781,526 + -0.4 3,781,680 + ECD_03595 0.12 +0.3 3,781,822 - ECD_03595 0.27 +0.3 3,781,896 + ECD_03595 0.35 +0.1 3,781,897 - ECD_03595 0.35 +0.3 3,781,897 - ECD_03595 0.35 +0.1 3,781,897 - ECD_03595 0.35 +0.5 3,781,918 + ECD_03595 0.37 -1.0 3,781,918 + ECD_03595 0.37 -0.1 3,781,918 + ECD_03595 0.37 +0.0 3,781,918 + ECD_03595 0.37 +0.3 3,781,919 - ECD_03595 0.37 +0.7 3,781,949 + ECD_03595 0.40 +0.0 3,781,950 - ECD_03595 0.41 -0.2 3,781,953 + ECD_03595 0.41 +0.7 3,781,953 + ECD_03595 0.41 -0.6 3,781,954 - ECD_03595 0.41 -0.3 3,781,954 - ECD_03595 0.41 +0.1 3,781,973 + ECD_03595 0.43 +0.0 3,781,974 - ECD_03595 0.43 +0.2 3,781,974 - ECD_03595 0.43 -0.4 3,782,049 - ECD_03595 0.51 +0.5 3,782,074 + ECD_03595 0.53 +0.0 3,782,074 + ECD_03595 0.53 -0.9 3,782,075 - ECD_03595 0.54 -0.8 3,782,088 + ECD_03595 0.55 -0.1 3,782,096 + ECD_03595 0.56 -0.7 3,782,096 + ECD_03595 0.56 +0.2 3,782,097 - ECD_03595 0.56 -0.5 3,782,097 - ECD_03595 0.56 +0.2 3,782,163 - ECD_03595 0.63 +0.7 3,782,163 - ECD_03595 0.63 -0.4 3,782,176 - ECD_03595 0.64 -0.2 3,782,176 - ECD_03595 0.64 +0.9 3,782,225 + ECD_03595 0.69 -0.9 3,782,226 - ECD_03595 0.69 +0.2 3,782,256 + ECD_03595 0.72 -1.7 3,782,257 - ECD_03595 0.72 -0.4 3,782,257 - ECD_03595 0.72 +0.4 3,782,316 - ECD_03595 0.79 +0.5 3,782,335 + ECD_03595 0.81 -0.1 3,782,345 - ECD_03595 0.82 +0.2 3,782,347 + ECD_03595 0.82 +0.5 3,782,348 - ECD_03595 0.82 +0.3 3,782,348 - ECD_03595 0.82 -0.0 3,782,430 + +0.2 3,782,431 - -0.6 3,782,431 - +0.6 3,782,461 - -0.5 3,782,530 - +0.5 3,782,575 + -0.2 3,782,575 + +0.6
Or see this region's nucleotide sequence