Experiment: Bas14
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03496 and ECD_03497 overlap by 20 nucleotides ECD_03497 and ECD_03498 are separated by 106 nucleotides ECD_03498 and ECD_03499 are separated by 36 nucleotides ECD_03499 and ECD_03500 are separated by 65 nucleotides
ECD_03496: ECD_03496 - fused 4'-phosphopantothenoylcysteine decarboxylase/phosphopantothenoylcysteine synthetase, FMN-binding, at 3,679,521 to 3,680,741
_03496
ECD_03497: ECD_03497 - deoxyuridinetriphosphatase, at 3,680,722 to 3,681,177
_03497
ECD_03498: ECD_03498 - nucleoid occlusion factor, anti-FtsZ division inhibitor, at 3,681,284 to 3,681,880
_03498
ECD_03499: ECD_03499 - orotate phosphoribosyltransferase, at 3,681,917 to 3,682,558
_03499
ECD_03500: ECD_03500 - ribonuclease PH, at 3,682,624 to 3,683,340
_03500
Position (kb)
3681
3682 Strain fitness (log2 ratio)
-2
-1
0
1 at 3681.182 kb on + strand at 3681.182 kb on + strand at 3681.182 kb on + strand at 3681.183 kb on - strand at 3681.183 kb on - strand at 3681.183 kb on - strand at 3681.183 kb on - strand at 3681.202 kb on + strand at 3681.203 kb on - strand at 3681.208 kb on - strand at 3681.376 kb on + strand, within ECD_03498 at 3681.377 kb on - strand, within ECD_03498 at 3681.446 kb on - strand, within ECD_03498 at 3681.488 kb on - strand, within ECD_03498 at 3681.586 kb on + strand, within ECD_03498 at 3681.586 kb on + strand, within ECD_03498 at 3681.587 kb on - strand, within ECD_03498 at 3681.676 kb on + strand, within ECD_03498 at 3681.788 kb on - strand, within ECD_03498 at 3681.788 kb on - strand, within ECD_03498 at 3681.788 kb on - strand, within ECD_03498 at 3681.817 kb on + strand, within ECD_03498 at 3681.881 kb on + strand at 3681.881 kb on + strand at 3681.881 kb on + strand at 3682.019 kb on - strand, within ECD_03499 at 3682.019 kb on - strand, within ECD_03499 at 3682.039 kb on - strand, within ECD_03499 at 3682.039 kb on - strand, within ECD_03499 at 3682.110 kb on - strand, within ECD_03499 at 3682.110 kb on - strand, within ECD_03499 at 3682.141 kb on + strand, within ECD_03499 at 3682.142 kb on - strand, within ECD_03499 at 3682.190 kb on + strand, within ECD_03499 at 3682.190 kb on + strand, within ECD_03499 at 3682.190 kb on + strand, within ECD_03499 at 3682.191 kb on - strand, within ECD_03499 at 3682.191 kb on - strand, within ECD_03499 at 3682.200 kb on - strand, within ECD_03499 at 3682.200 kb on - strand, within ECD_03499 at 3682.211 kb on + strand, within ECD_03499 at 3682.345 kb on - strand, within ECD_03499 at 3682.345 kb on - strand, within ECD_03499 at 3682.402 kb on - strand, within ECD_03499 at 3682.435 kb on + strand, within ECD_03499 at 3682.461 kb on + strand, within ECD_03499 at 3682.461 kb on + strand, within ECD_03499 at 3682.462 kb on - strand, within ECD_03499 at 3682.584 kb on + strand at 3682.585 kb on - strand at 3682.655 kb on - strand at 3682.655 kb on - strand at 3682.700 kb on - strand, within ECD_03500 at 3682.775 kb on - strand, within ECD_03500 at 3682.775 kb on - strand, within ECD_03500 at 3682.811 kb on + strand, within ECD_03500 at 3682.812 kb on - strand, within ECD_03500 at 3682.841 kb on - strand, within ECD_03500 at 3682.841 kb on - strand, within ECD_03500
Per-strain Table
Position Strand Gene LocusTag Fraction Bas14 remove 3,681,182 + -0.2 3,681,182 + -0.4 3,681,182 + +0.7 3,681,183 - -0.7 3,681,183 - +0.6 3,681,183 - -1.3 3,681,183 - -0.4 3,681,202 + -0.8 3,681,203 - -0.7 3,681,208 - -1.1 3,681,376 + ECD_03498 0.15 -1.0 3,681,377 - ECD_03498 0.16 -1.7 3,681,446 - ECD_03498 0.27 +0.1 3,681,488 - ECD_03498 0.34 +0.7 3,681,586 + ECD_03498 0.51 -2.2 3,681,586 + ECD_03498 0.51 +0.1 3,681,587 - ECD_03498 0.51 -0.4 3,681,676 + ECD_03498 0.66 -1.9 3,681,788 - ECD_03498 0.84 -0.9 3,681,788 - ECD_03498 0.84 -0.4 3,681,788 - ECD_03498 0.84 +0.5 3,681,817 + ECD_03498 0.89 -1.4 3,681,881 + +0.1 3,681,881 + +0.3 3,681,881 + +0.1 3,682,019 - ECD_03499 0.16 -2.4 3,682,019 - ECD_03499 0.16 -0.1 3,682,039 - ECD_03499 0.19 -0.1 3,682,039 - ECD_03499 0.19 -0.1 3,682,110 - ECD_03499 0.30 -0.1 3,682,110 - ECD_03499 0.30 -0.4 3,682,141 + ECD_03499 0.35 -0.2 3,682,142 - ECD_03499 0.35 -0.2 3,682,190 + ECD_03499 0.43 -1.4 3,682,190 + ECD_03499 0.43 +0.7 3,682,190 + ECD_03499 0.43 -0.4 3,682,191 - ECD_03499 0.43 -0.6 3,682,191 - ECD_03499 0.43 +1.4 3,682,200 - ECD_03499 0.44 +0.1 3,682,200 - ECD_03499 0.44 -0.0 3,682,211 + ECD_03499 0.46 -0.0 3,682,345 - ECD_03499 0.67 +0.8 3,682,345 - ECD_03499 0.67 +0.7 3,682,402 - ECD_03499 0.76 -0.1 3,682,435 + ECD_03499 0.81 +0.3 3,682,461 + ECD_03499 0.85 +0.5 3,682,461 + ECD_03499 0.85 -0.2 3,682,462 - ECD_03499 0.85 -0.3 3,682,584 + -0.3 3,682,585 - -0.1 3,682,655 - -0.9 3,682,655 - +0.1 3,682,700 - ECD_03500 0.11 +0.6 3,682,775 - ECD_03500 0.21 -1.6 3,682,775 - ECD_03500 0.21 -0.0 3,682,811 + ECD_03500 0.26 -1.0 3,682,812 - ECD_03500 0.26 -1.0 3,682,841 - ECD_03500 0.30 -0.7 3,682,841 - ECD_03500 0.30 +0.0
Or see this region's nucleotide sequence