Strain Fitness in Escherichia coli BL21 around ECD_03329

Experiment: Bas14

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03327 and ECD_03328 overlap by 1 nucleotidesECD_03328 and ECD_03329 overlap by 4 nucleotidesECD_03329 and ECD_03330 are separated by 5 nucleotidesECD_03330 and ECD_03331 are separated by 202 nucleotides ECD_03327: ECD_03327 - nickel ABC transporter permease, at 3,478,566 to 3,479,399 _03327 ECD_03328: ECD_03328 - nickel ABC transporter ATPase, at 3,479,399 to 3,480,163 _03328 ECD_03329: ECD_03329 - nickel ABC transporter ATPase, at 3,480,160 to 3,480,966 _03329 ECD_03330: ECD_03330 - transcriptional repressor, Ni-binding, at 3,480,972 to 3,481,373 _03330 ECD_03331: ECD_03331 - Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor, at 3,481,576 to 3,485,811 _03331 Position (kb) 3480 3481Strain fitness (log2 ratio) -1 0 1 2at 3479.172 kb on - strand, within ECD_03327at 3479.172 kb on - strand, within ECD_03327at 3479.265 kb on + strand, within ECD_03327at 3479.266 kb on - strand, within ECD_03327at 3479.266 kb on - strand, within ECD_03327at 3479.267 kb on + strand, within ECD_03327at 3479.267 kb on + strand, within ECD_03327at 3479.267 kb on + strand, within ECD_03327at 3479.268 kb on - strand, within ECD_03327at 3479.268 kb on - strand, within ECD_03327at 3479.333 kb on + strandat 3479.397 kb on + strandat 3479.398 kb on - strandat 3479.418 kb on + strandat 3479.419 kb on - strandat 3479.422 kb on + strandat 3479.422 kb on + strandat 3479.422 kb on + strandat 3479.423 kb on - strandat 3479.455 kb on - strandat 3479.463 kb on + strandat 3479.464 kb on - strandat 3479.764 kb on - strand, within ECD_03328at 3479.919 kb on + strand, within ECD_03328at 3479.998 kb on + strand, within ECD_03328at 3480.050 kb on - strand, within ECD_03328at 3480.072 kb on + strand, within ECD_03328at 3480.072 kb on + strand, within ECD_03328at 3480.073 kb on - strand, within ECD_03328at 3480.140 kb on + strandat 3480.168 kb on - strandat 3480.168 kb on - strandat 3480.168 kb on - strandat 3480.172 kb on - strandat 3480.197 kb on - strandat 3480.341 kb on + strand, within ECD_03329at 3480.342 kb on - strand, within ECD_03329at 3480.342 kb on - strand, within ECD_03329at 3480.364 kb on - strand, within ECD_03329at 3480.364 kb on - strand, within ECD_03329at 3480.366 kb on + strand, within ECD_03329at 3480.366 kb on + strand, within ECD_03329at 3480.366 kb on + strand, within ECD_03329at 3480.367 kb on - strand, within ECD_03329at 3480.367 kb on - strand, within ECD_03329at 3480.367 kb on - strand, within ECD_03329at 3480.367 kb on - strand, within ECD_03329at 3480.412 kb on - strand, within ECD_03329at 3480.440 kb on + strand, within ECD_03329at 3480.518 kb on + strand, within ECD_03329at 3480.518 kb on + strand, within ECD_03329at 3480.615 kb on - strand, within ECD_03329at 3480.674 kb on + strand, within ECD_03329at 3480.675 kb on - strand, within ECD_03329at 3480.717 kb on - strand, within ECD_03329at 3480.749 kb on + strand, within ECD_03329at 3480.794 kb on + strand, within ECD_03329at 3480.794 kb on + strand, within ECD_03329at 3480.874 kb on - strand, within ECD_03329at 3480.874 kb on - strand, within ECD_03329at 3480.874 kb on - strand, within ECD_03329at 3481.044 kb on + strand, within ECD_03330at 3481.045 kb on - strand, within ECD_03330at 3481.046 kb on + strand, within ECD_03330at 3481.046 kb on + strand, within ECD_03330at 3481.046 kb on + strand, within ECD_03330at 3481.047 kb on - strand, within ECD_03330at 3481.074 kb on - strand, within ECD_03330at 3481.104 kb on - strand, within ECD_03330at 3481.144 kb on - strand, within ECD_03330at 3481.144 kb on - strand, within ECD_03330at 3481.149 kb on + strand, within ECD_03330at 3481.149 kb on + strand, within ECD_03330at 3481.150 kb on - strand, within ECD_03330at 3481.150 kb on - strand, within ECD_03330at 3481.171 kb on + strand, within ECD_03330at 3481.377 kb on + strandat 3481.378 kb on - strandat 3481.418 kb on - strandat 3481.437 kb on + strandat 3481.441 kb on + strandat 3481.442 kb on - strandat 3481.475 kb on - strandat 3481.478 kb on + strandat 3481.480 kb on + strandat 3481.543 kb on - strandat 3481.543 kb on - strandat 3481.560 kb on - strandat 3481.652 kb on + strandat 3481.652 kb on + strandat 3481.887 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas14
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3,479,172 - ECD_03327 0.73 -0.0
3,479,172 - ECD_03327 0.73 +0.8
3,479,265 + ECD_03327 0.84 +0.6
3,479,266 - ECD_03327 0.84 +1.1
3,479,266 - ECD_03327 0.84 -0.3
3,479,267 + ECD_03327 0.84 +0.5
3,479,267 + ECD_03327 0.84 -0.4
3,479,267 + ECD_03327 0.84 +0.1
3,479,268 - ECD_03327 0.84 +0.5
3,479,268 - ECD_03327 0.84 +1.2
3,479,333 + +0.2
3,479,397 + +0.1
3,479,398 - +0.4
3,479,418 + +0.3
3,479,419 - +1.4
3,479,422 + +0.4
3,479,422 + -0.2
3,479,422 + -0.4
3,479,423 - -0.1
3,479,455 - +1.2
3,479,463 + +0.3
3,479,464 - +0.9
3,479,764 - ECD_03328 0.48 -0.6
3,479,919 + ECD_03328 0.68 -0.0
3,479,998 + ECD_03328 0.78 +0.9
3,480,050 - ECD_03328 0.85 +0.4
3,480,072 + ECD_03328 0.88 +0.1
3,480,072 + ECD_03328 0.88 +0.0
3,480,073 - ECD_03328 0.88 +2.1
3,480,140 + +0.4
3,480,168 - -0.1
3,480,168 - -0.0
3,480,168 - -0.0
3,480,172 - -0.2
3,480,197 - -0.4
3,480,341 + ECD_03329 0.22 +1.0
3,480,342 - ECD_03329 0.23 -0.3
3,480,342 - ECD_03329 0.23 -0.4
3,480,364 - ECD_03329 0.25 +0.9
3,480,364 - ECD_03329 0.25 +0.7
3,480,366 + ECD_03329 0.26 +0.2
3,480,366 + ECD_03329 0.26 -0.9
3,480,366 + ECD_03329 0.26 +0.4
3,480,367 - ECD_03329 0.26 +0.0
3,480,367 - ECD_03329 0.26 +0.3
3,480,367 - ECD_03329 0.26 +0.5
3,480,367 - ECD_03329 0.26 +0.1
3,480,412 - ECD_03329 0.31 +0.1
3,480,440 + ECD_03329 0.35 +0.3
3,480,518 + ECD_03329 0.44 -0.1
3,480,518 + ECD_03329 0.44 -0.5
3,480,615 - ECD_03329 0.56 -0.8
3,480,674 + ECD_03329 0.64 +0.7
3,480,675 - ECD_03329 0.64 +0.3
3,480,717 - ECD_03329 0.69 +0.8
3,480,749 + ECD_03329 0.73 -0.7
3,480,794 + ECD_03329 0.79 +0.6
3,480,794 + ECD_03329 0.79 -0.3
3,480,874 - ECD_03329 0.88 +0.1
3,480,874 - ECD_03329 0.88 -0.6
3,480,874 - ECD_03329 0.88 +1.4
3,481,044 + ECD_03330 0.18 -0.4
3,481,045 - ECD_03330 0.18 -0.3
3,481,046 + ECD_03330 0.18 +0.7
3,481,046 + ECD_03330 0.18 +0.9
3,481,046 + ECD_03330 0.18 +0.1
3,481,047 - ECD_03330 0.19 +0.1
3,481,074 - ECD_03330 0.25 +0.9
3,481,104 - ECD_03330 0.33 -0.8
3,481,144 - ECD_03330 0.43 +0.6
3,481,144 - ECD_03330 0.43 +0.2
3,481,149 + ECD_03330 0.44 +1.0
3,481,149 + ECD_03330 0.44 +0.7
3,481,150 - ECD_03330 0.44 +0.6
3,481,150 - ECD_03330 0.44 +0.4
3,481,171 + ECD_03330 0.50 +0.5
3,481,377 + +0.0
3,481,378 - +0.7
3,481,418 - +0.7
3,481,437 + -0.6
3,481,441 + +0.4
3,481,442 - -0.2
3,481,475 - +0.2
3,481,478 + -0.8
3,481,480 + +0.8
3,481,543 - -0.7
3,481,543 - +0.3
3,481,560 - +0.3
3,481,652 + -0.4
3,481,652 + +0.1
3,481,887 - -0.0

Or see this region's nucleotide sequence