Strain Fitness in Escherichia coli BL21 around ECD_03035

Experiment: Bas14

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntECD_03033 and ECD_03034 overlap by 1 nucleotidesECD_03034 and ECD_03035 are separated by 163 nucleotidesECD_03035 and ECD_03036 are separated by 24 nucleotides ECD_03033: ECD_03033 - tRNA pseudouridine synthase B: tRNA pseudouridine(55) synthase and putative tmRNA pseudouridine(342) synthase, at 3,180,332 to 3,181,276 _03033 ECD_03034: ECD_03034 - 30s ribosome binding factor, at 3,181,276 to 3,181,677 _03034 ECD_03035: ECD_03035 - translation initiation factor IF-2, at 3,181,841 to 3,184,513 _03035 ECD_03036: ECD_03036 - transcription termination/antitermination L factor, at 3,184,538 to 3,186,025 _03036 Position (kb) 3181 3182 3183 3184 3185Strain fitness (log2 ratio) -3 -2 -1 0 1at 3180.886 kb on - strand, within ECD_03033at 3180.901 kb on - strand, within ECD_03033at 3181.168 kb on + strand, within ECD_03033at 3181.169 kb on - strand, within ECD_03033at 3181.169 kb on - strand, within ECD_03033at 3181.170 kb on + strand, within ECD_03033at 3181.170 kb on + strand, within ECD_03033at 3181.170 kb on + strand, within ECD_03033at 3181.170 kb on + strand, within ECD_03033at 3181.170 kb on + strand, within ECD_03033at 3181.170 kb on + strand, within ECD_03033at 3181.170 kb on + strand, within ECD_03033at 3181.170 kb on + strand, within ECD_03033at 3181.171 kb on - strand, within ECD_03033at 3181.171 kb on - strand, within ECD_03033at 3181.171 kb on - strand, within ECD_03033at 3181.171 kb on - strand, within ECD_03033at 3181.171 kb on - strand, within ECD_03033at 3181.171 kb on - strand, within ECD_03033at 3181.171 kb on - strand, within ECD_03033at 3181.171 kb on - strand, within ECD_03033at 3181.172 kb on + strand, within ECD_03033at 3181.172 kb on + strand, within ECD_03033at 3181.172 kb on + strand, within ECD_03033at 3181.172 kb on + strand, within ECD_03033at 3181.172 kb on + strand, within ECD_03033at 3181.172 kb on + strand, within ECD_03033at 3181.172 kb on + strand, within ECD_03033at 3181.173 kb on - strand, within ECD_03033at 3181.173 kb on - strand, within ECD_03033at 3181.174 kb on + strand, within ECD_03033at 3181.174 kb on + strand, within ECD_03033at 3181.174 kb on + strand, within ECD_03033at 3181.174 kb on + strand, within ECD_03033at 3181.175 kb on - strand, within ECD_03033at 3181.175 kb on - strand, within ECD_03033at 3181.175 kb on - strand, within ECD_03033at 3181.175 kb on - strand, within ECD_03033at 3181.175 kb on - strand, within ECD_03033at 3181.175 kb on - strand, within ECD_03033at 3181.210 kb on + strandat 3181.211 kb on - strandat 3181.278 kb on - strandat 3181.278 kb on - strandat 3181.278 kb on - strandat 3181.762 kb on - strandat 3181.853 kb on - strandat 3181.853 kb on - strandat 3181.853 kb on - strandat 3181.853 kb on - strandat 3184.530 kb on - strandat 3184.530 kb on - strandat 3184.530 kb on - strandat 3184.537 kb on - strandat 3184.537 kb on - strandat 3184.664 kb on - strandat 3184.664 kb on - strandat 3184.664 kb on - strandat 3184.664 kb on - strandat 3184.664 kb on - strandat 3184.870 kb on - strand, within ECD_03036at 3184.870 kb on - strand, within ECD_03036at 3184.870 kb on - strand, within ECD_03036at 3184.870 kb on - strand, within ECD_03036at 3184.870 kb on - strand, within ECD_03036at 3184.870 kb on - strand, within ECD_03036at 3184.942 kb on - strand, within ECD_03036

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Bas14
remove
3,180,886 - ECD_03033 0.59 -0.2
3,180,901 - ECD_03033 0.60 -0.1
3,181,168 + ECD_03033 0.88 -1.3
3,181,169 - ECD_03033 0.89 -0.0
3,181,169 - ECD_03033 0.89 -1.3
3,181,170 + ECD_03033 0.89 -0.3
3,181,170 + ECD_03033 0.89 +0.4
3,181,170 + ECD_03033 0.89 -0.7
3,181,170 + ECD_03033 0.89 -0.1
3,181,170 + ECD_03033 0.89 +0.1
3,181,170 + ECD_03033 0.89 +0.6
3,181,170 + ECD_03033 0.89 -0.3
3,181,170 + ECD_03033 0.89 -0.5
3,181,171 - ECD_03033 0.89 -0.2
3,181,171 - ECD_03033 0.89 +0.3
3,181,171 - ECD_03033 0.89 -0.3
3,181,171 - ECD_03033 0.89 -0.1
3,181,171 - ECD_03033 0.89 -0.4
3,181,171 - ECD_03033 0.89 +0.6
3,181,171 - ECD_03033 0.89 -0.6
3,181,171 - ECD_03033 0.89 +0.1
3,181,172 + ECD_03033 0.89 +0.5
3,181,172 + ECD_03033 0.89 -0.1
3,181,172 + ECD_03033 0.89 +0.7
3,181,172 + ECD_03033 0.89 -0.1
3,181,172 + ECD_03033 0.89 -0.8
3,181,172 + ECD_03033 0.89 +0.6
3,181,172 + ECD_03033 0.89 -0.1
3,181,173 - ECD_03033 0.89 +0.1
3,181,173 - ECD_03033 0.89 +0.4
3,181,174 + ECD_03033 0.89 +0.1
3,181,174 + ECD_03033 0.89 -0.8
3,181,174 + ECD_03033 0.89 +0.3
3,181,174 + ECD_03033 0.89 +0.8
3,181,175 - ECD_03033 0.89 -1.5
3,181,175 - ECD_03033 0.89 +0.0
3,181,175 - ECD_03033 0.89 +0.2
3,181,175 - ECD_03033 0.89 +0.2
3,181,175 - ECD_03033 0.89 -0.0
3,181,175 - ECD_03033 0.89 +0.9
3,181,210 + +0.2
3,181,211 - +0.7
3,181,278 - -0.3
3,181,278 - +0.1
3,181,278 - +0.6
3,181,762 - +0.4
3,181,853 - +0.5
3,181,853 - +0.2
3,181,853 - -1.3
3,181,853 - +0.4
3,184,530 - +0.5
3,184,530 - -0.1
3,184,530 - -1.4
3,184,537 - +0.4
3,184,537 - +0.7
3,184,664 - -0.3
3,184,664 - +0.3
3,184,664 - -1.6
3,184,664 - -0.3
3,184,664 - -0.3
3,184,870 - ECD_03036 0.22 -2.6
3,184,870 - ECD_03036 0.22 -0.7
3,184,870 - ECD_03036 0.22 -0.4
3,184,870 - ECD_03036 0.22 -1.3
3,184,870 - ECD_03036 0.22 -3.0
3,184,870 - ECD_03036 0.22 -2.3
3,184,942 - ECD_03036 0.27 -0.7

Or see this region's nucleotide sequence