Experiment: Bas14
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01847 and ECD_01848 are separated by 176 nucleotides ECD_01848 and ECD_01849 are separated by 119 nucleotides ECD_01849 and ECD_01850 overlap by 1 nucleotides
ECD_01847: ECD_01847 - arginyl-tRNA synthetase, at 1,905,980 to 1,907,713
_01847
ECD_01848: ECD_01848 - uncharacterized protein, at 1,907,890 to 1,908,378
_01848
ECD_01849: ECD_01849 - proton seal during flagellar secretion, at 1,908,498 to 1,908,890
_01849
ECD_01850: ECD_01850 - putative flagellar export pore protein, at 1,908,890 to 1,910,968
_01850
Position (kb)
1908
1909 Strain fitness (log2 ratio)
-1
0
1 at 1907.777 kb on - strand at 1908.643 kb on - strand, within ECD_01849 at 1908.811 kb on - strand, within ECD_01849 at 1908.816 kb on - strand, within ECD_01849 at 1908.871 kb on - strand at 1908.871 kb on - strand at 1908.877 kb on - strand at 1909.493 kb on - strand, within ECD_01850 at 1909.739 kb on - strand, within ECD_01850 at 1909.739 kb on - strand, within ECD_01850
Per-strain Table
Position Strand Gene LocusTag Fraction Bas14 remove 1,907,777 - +0.3 1,908,643 - ECD_01849 0.37 -0.2 1,908,811 - ECD_01849 0.80 -0.3 1,908,816 - ECD_01849 0.81 -0.5 1,908,871 - +0.0 1,908,871 - -1.1 1,908,877 - -0.1 1,909,493 - ECD_01850 0.29 +0.2 1,909,739 - ECD_01850 0.41 +0.3 1,909,739 - ECD_01850 0.41 +0.6
Or see this region's nucleotide sequence