Experiment: Bas14
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01611 and ECD_01612 are separated by 46 nucleotides ECD_01612 and ECD_01613 are separated by 200 nucleotides ECD_01613 and ECD_01614 are separated by 2 nucleotides ECD_01614 and ECD_01615 overlap by 1 nucleotides
ECD_01611: ECD_01611 - outer membrane lipoprotein, at 1,665,072 to 1,665,539
_01611
ECD_01612: ECD_01612 - global transcriptional regulator, at 1,665,586 to 1,666,020
_01612
ECD_01613: ECD_01613 - DUF1656 family putative inner membrane efflux pump associated protein, at 1,666,221 to 1,666,457
_01613
ECD_01614: ECD_01614 - putative membrane fusion protein (MFP) of YdhJK efflux pump, at 1,666,460 to 1,667,317
_01614
ECD_01615: ECD_01615 - putative efflux protein (PET) component of YdhJK efflux pump, at 1,667,317 to 1,669,329
_01615
Position (kb) 1666
1667
1668 Strain fitness (log2 ratio) -1
0
1
2 at 1665.537 kb on + strand at 1666.340 kb on - strand, within ECD_01613 at 1666.621 kb on + strand, within ECD_01614 at 1666.622 kb on - strand, within ECD_01614 at 1666.636 kb on + strand, within ECD_01614 at 1667.096 kb on + strand, within ECD_01614 at 1667.885 kb on + strand, within ECD_01615 at 1668.062 kb on + strand, within ECD_01615 at 1668.063 kb on - strand, within ECD_01615 at 1668.309 kb on - strand, within ECD_01615
Per-strain Table
Position Strand Gene LocusTag Fraction Bas14 remove 1,665,537 + +0.0 1,666,340 - ECD_01613 0.50 -0.9 1,666,621 + ECD_01614 0.19 +0.4 1,666,622 - ECD_01614 0.19 +1.1 1,666,636 + ECD_01614 0.21 +2.0 1,667,096 + ECD_01614 0.74 -0.4 1,667,885 + ECD_01615 0.28 -0.4 1,668,062 + ECD_01615 0.37 -0.9 1,668,063 - ECD_01615 0.37 -1.5 1,668,309 - ECD_01615 0.49 +0.2
Or see this region's nucleotide sequence