Experiment: Bas14
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00560 and ECD_00561 are separated by 9 nucleotides ECD_00561 and ECD_00562 are separated by 13 nucleotides ECD_00562 and ECD_00563 overlap by 1 nucleotides
ECD_00560: ECD_00560 - isochorismate synthase 1, at 585,372 to 586,547
_00560
ECD_00561: ECD_00561 - 2,3-dihydroxybenzoate-AMP ligase component of enterobactin synthase multienzyme complex, at 586,557 to 588,167
_00561
ECD_00562: ECD_00562 - isochorismatase, at 588,181 to 589,038
_00562
ECD_00563: ECD_00563 - 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase, at 589,038 to 589,784
_00563
Position (kb) 586
587
588
589 Strain fitness (log2 ratio) -2
-1
0
1 at 585.636 kb on + strand, within ECD_00560 at 585.636 kb on + strand, within ECD_00560 at 585.636 kb on + strand, within ECD_00560 at 585.636 kb on + strand, within ECD_00560 at 585.637 kb on - strand, within ECD_00560 at 585.637 kb on - strand, within ECD_00560 at 585.637 kb on - strand, within ECD_00560 at 585.639 kb on - strand, within ECD_00560 at 585.789 kb on - strand, within ECD_00560 at 585.971 kb on - strand, within ECD_00560 at 586.151 kb on - strand, within ECD_00560 at 586.179 kb on - strand, within ECD_00560 at 586.221 kb on - strand, within ECD_00560 at 586.517 kb on + strand at 586.745 kb on + strand, within ECD_00561 at 586.789 kb on + strand, within ECD_00561 at 586.790 kb on - strand, within ECD_00561 at 586.816 kb on - strand, within ECD_00561 at 586.817 kb on + strand, within ECD_00561 at 587.175 kb on + strand, within ECD_00561 at 587.176 kb on - strand, within ECD_00561 at 587.178 kb on + strand, within ECD_00561 at 587.179 kb on - strand, within ECD_00561 at 587.181 kb on + strand, within ECD_00561 at 587.182 kb on - strand, within ECD_00561 at 587.182 kb on - strand, within ECD_00561 at 587.195 kb on + strand, within ECD_00561 at 587.259 kb on - strand, within ECD_00561 at 587.262 kb on + strand, within ECD_00561 at 587.262 kb on + strand, within ECD_00561 at 587.263 kb on - strand, within ECD_00561 at 587.263 kb on - strand, within ECD_00561 at 587.263 kb on - strand, within ECD_00561 at 587.471 kb on - strand, within ECD_00561 at 587.650 kb on + strand, within ECD_00561 at 587.651 kb on - strand, within ECD_00561 at 587.739 kb on + strand, within ECD_00561 at 587.826 kb on + strand, within ECD_00561 at 587.931 kb on + strand, within ECD_00561 at 587.932 kb on - strand, within ECD_00561 at 587.932 kb on - strand, within ECD_00561 at 587.996 kb on - strand, within ECD_00561 at 588.133 kb on + strand at 588.133 kb on + strand at 588.205 kb on + strand at 588.281 kb on + strand, within ECD_00562 at 588.282 kb on - strand, within ECD_00562 at 588.376 kb on + strand, within ECD_00562 at 588.393 kb on + strand, within ECD_00562 at 588.406 kb on + strand, within ECD_00562 at 588.459 kb on + strand, within ECD_00562 at 588.459 kb on + strand, within ECD_00562 at 588.459 kb on + strand, within ECD_00562 at 588.459 kb on + strand, within ECD_00562 at 588.622 kb on - strand, within ECD_00562 at 588.632 kb on + strand, within ECD_00562 at 588.651 kb on + strand, within ECD_00562 at 588.684 kb on + strand, within ECD_00562 at 588.688 kb on - strand, within ECD_00562 at 588.696 kb on + strand, within ECD_00562 at 588.810 kb on + strand, within ECD_00562 at 589.016 kb on + strand at 589.092 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas14 remove 585,636 + ECD_00560 0.22 +0.2 585,636 + ECD_00560 0.22 +0.2 585,636 + ECD_00560 0.22 +0.3 585,636 + ECD_00560 0.22 +0.0 585,637 - ECD_00560 0.23 -0.0 585,637 - ECD_00560 0.23 +1.2 585,637 - ECD_00560 0.23 -0.4 585,639 - ECD_00560 0.23 +1.1 585,789 - ECD_00560 0.35 -0.2 585,971 - ECD_00560 0.51 -0.8 586,151 - ECD_00560 0.66 -0.3 586,179 - ECD_00560 0.69 +0.1 586,221 - ECD_00560 0.72 +0.9 586,517 + -0.5 586,745 + ECD_00561 0.12 -0.4 586,789 + ECD_00561 0.14 -0.6 586,790 - ECD_00561 0.14 -0.9 586,816 - ECD_00561 0.16 -0.1 586,817 + ECD_00561 0.16 -0.9 587,175 + ECD_00561 0.38 -1.3 587,176 - ECD_00561 0.38 -0.4 587,178 + ECD_00561 0.39 -1.7 587,179 - ECD_00561 0.39 +0.3 587,181 + ECD_00561 0.39 -0.0 587,182 - ECD_00561 0.39 -1.1 587,182 - ECD_00561 0.39 +0.3 587,195 + ECD_00561 0.40 +0.3 587,259 - ECD_00561 0.44 +1.6 587,262 + ECD_00561 0.44 +0.2 587,262 + ECD_00561 0.44 -0.5 587,263 - ECD_00561 0.44 -0.0 587,263 - ECD_00561 0.44 -0.4 587,263 - ECD_00561 0.44 -0.3 587,471 - ECD_00561 0.57 -1.8 587,650 + ECD_00561 0.68 +0.8 587,651 - ECD_00561 0.68 +0.5 587,739 + ECD_00561 0.73 -0.1 587,826 + ECD_00561 0.79 -0.0 587,931 + ECD_00561 0.85 -1.6 587,932 - ECD_00561 0.85 -0.2 587,932 - ECD_00561 0.85 +0.5 587,996 - ECD_00561 0.89 +0.3 588,133 + +0.3 588,133 + +0.2 588,205 + +0.6 588,281 + ECD_00562 0.12 +0.2 588,282 - ECD_00562 0.12 +0.6 588,376 + ECD_00562 0.23 +0.2 588,393 + ECD_00562 0.25 -0.1 588,406 + ECD_00562 0.26 -0.8 588,459 + ECD_00562 0.32 -0.9 588,459 + ECD_00562 0.32 +0.9 588,459 + ECD_00562 0.32 +0.4 588,459 + ECD_00562 0.32 -0.6 588,622 - ECD_00562 0.51 +1.1 588,632 + ECD_00562 0.53 +0.3 588,651 + ECD_00562 0.55 -0.5 588,684 + ECD_00562 0.59 +0.0 588,688 - ECD_00562 0.59 -0.2 588,696 + ECD_00562 0.60 -1.3 588,810 + ECD_00562 0.73 -0.2 589,016 + -0.0 589,092 + -0.5
Or see this region's nucleotide sequence