Strain Fitness in Escherichia coli BL21 around ECD_03872

Experiment: Bas14

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03871 and ECD_03872 are separated by 233 nucleotidesECD_03872 and ECD_03873 are separated by 94 nucleotidesECD_03873 and ECD_03874 are separated by 39 nucleotides ECD_03871: ECD_03871 - phosphomethylpyrimidine synthase, at 4,102,255 to 4,104,150 _03871 ECD_03872: ECD_03872 - stationary phase protein, binds sigma 70 RNA polymerase subunit, at 4,104,384 to 4,104,860 _03872 ECD_03873: ECD_03873 - NADH pyrophosphatase, at 4,104,955 to 4,105,728 _03873 ECD_03874: ECD_03874 - uroporphyrinogen decarboxylase, at 4,105,768 to 4,106,832 _03874 Position (kb) 4104 4105Strain fitness (log2 ratio) -3 -2 -1 0 1at 4103.461 kb on - strand, within ECD_03871at 4103.461 kb on - strand, within ECD_03871at 4103.469 kb on + strand, within ECD_03871at 4103.560 kb on - strand, within ECD_03871at 4103.746 kb on + strand, within ECD_03871at 4103.746 kb on + strand, within ECD_03871at 4103.797 kb on - strand, within ECD_03871at 4103.801 kb on + strand, within ECD_03871at 4103.802 kb on - strand, within ECD_03871at 4103.863 kb on + strand, within ECD_03871at 4103.864 kb on - strand, within ECD_03871at 4103.864 kb on - strand, within ECD_03871at 4103.864 kb on - strand, within ECD_03871at 4103.987 kb on - strandat 4104.051 kb on - strandat 4104.051 kb on - strandat 4104.051 kb on - strandat 4104.051 kb on - strandat 4104.051 kb on - strandat 4104.097 kb on - strandat 4104.150 kb on + strandat 4104.150 kb on + strandat 4104.150 kb on + strandat 4104.150 kb on + strandat 4104.150 kb on + strandat 4104.150 kb on + strandat 4104.151 kb on - strandat 4104.151 kb on - strandat 4104.151 kb on - strandat 4104.151 kb on - strandat 4104.151 kb on - strandat 4104.151 kb on - strandat 4104.168 kb on + strandat 4104.239 kb on - strandat 4104.239 kb on - strandat 4104.261 kb on - strandat 4104.261 kb on - strandat 4104.261 kb on - strandat 4104.293 kb on - strandat 4104.358 kb on + strandat 4104.358 kb on + strandat 4104.371 kb on - strandat 4104.435 kb on - strand, within ECD_03872at 4104.506 kb on + strand, within ECD_03872at 4104.541 kb on + strand, within ECD_03872at 4104.551 kb on + strand, within ECD_03872at 4104.647 kb on + strand, within ECD_03872at 4104.648 kb on - strand, within ECD_03872at 4104.670 kb on + strand, within ECD_03872at 4104.671 kb on - strand, within ECD_03872at 4104.725 kb on - strand, within ECD_03872at 4104.725 kb on - strand, within ECD_03872at 4104.760 kb on + strand, within ECD_03872at 4104.760 kb on + strand, within ECD_03872at 4104.761 kb on - strand, within ECD_03872at 4104.761 kb on - strand, within ECD_03872at 4104.763 kb on + strand, within ECD_03872at 4104.782 kb on + strand, within ECD_03872at 4104.782 kb on + strand, within ECD_03872at 4104.782 kb on + strand, within ECD_03872at 4104.782 kb on + strand, within ECD_03872at 4104.782 kb on + strand, within ECD_03872at 4104.783 kb on - strand, within ECD_03872at 4104.783 kb on - strand, within ECD_03872at 4104.783 kb on - strand, within ECD_03872at 4104.783 kb on - strand, within ECD_03872at 4104.786 kb on + strand, within ECD_03872at 4104.786 kb on + strand, within ECD_03872at 4104.786 kb on + strand, within ECD_03872at 4104.786 kb on + strand, within ECD_03872at 4104.786 kb on + strand, within ECD_03872at 4104.786 kb on + strand, within ECD_03872at 4104.786 kb on + strand, within ECD_03872at 4104.786 kb on + strand, within ECD_03872at 4104.786 kb on + strand, within ECD_03872at 4104.786 kb on + strand, within ECD_03872at 4104.787 kb on - strand, within ECD_03872at 4104.787 kb on - strand, within ECD_03872at 4104.787 kb on - strand, within ECD_03872at 4104.787 kb on - strand, within ECD_03872at 4104.787 kb on - strand, within ECD_03872at 4104.787 kb on - strand, within ECD_03872at 4104.787 kb on - strand, within ECD_03872at 4104.787 kb on - strand, within ECD_03872at 4104.787 kb on - strand, within ECD_03872at 4104.787 kb on - strand, within ECD_03872at 4104.787 kb on - strand, within ECD_03872at 4104.787 kb on - strand, within ECD_03872at 4104.787 kb on - strand, within ECD_03872at 4104.792 kb on + strand, within ECD_03872at 4104.815 kb on + strandat 4104.816 kb on - strandat 4104.855 kb on - strandat 4104.942 kb on + strandat 4104.942 kb on + strandat 4104.943 kb on - strandat 4104.954 kb on + strandat 4104.954 kb on + strandat 4104.955 kb on - strandat 4104.955 kb on - strandat 4105.122 kb on - strand, within ECD_03873at 4105.124 kb on + strand, within ECD_03873at 4105.124 kb on + strand, within ECD_03873at 4105.125 kb on - strand, within ECD_03873at 4105.125 kb on - strand, within ECD_03873at 4105.157 kb on + strand, within ECD_03873at 4105.157 kb on + strand, within ECD_03873at 4105.212 kb on - strand, within ECD_03873at 4105.212 kb on - strand, within ECD_03873at 4105.212 kb on - strand, within ECD_03873at 4105.212 kb on - strand, within ECD_03873at 4105.243 kb on + strand, within ECD_03873at 4105.244 kb on - strand, within ECD_03873at 4105.244 kb on - strand, within ECD_03873at 4105.244 kb on - strand, within ECD_03873at 4105.244 kb on - strand, within ECD_03873at 4105.322 kb on - strand, within ECD_03873at 4105.347 kb on + strand, within ECD_03873at 4105.348 kb on - strand, within ECD_03873at 4105.421 kb on + strand, within ECD_03873at 4105.422 kb on - strand, within ECD_03873at 4105.422 kb on - strand, within ECD_03873at 4105.498 kb on - strand, within ECD_03873at 4105.498 kb on - strand, within ECD_03873at 4105.576 kb on + strand, within ECD_03873at 4105.636 kb on + strand, within ECD_03873at 4105.688 kb on + strandat 4105.688 kb on + strandat 4105.688 kb on + strandat 4105.688 kb on + strandat 4105.688 kb on + strandat 4105.689 kb on - strandat 4105.696 kb on - strandat 4105.696 kb on - strandat 4105.696 kb on - strandat 4105.720 kb on + strandat 4105.732 kb on + strandat 4105.732 kb on + strandat 4105.732 kb on + strandat 4105.733 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas14
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4,103,461 - ECD_03871 0.64 -0.2
4,103,461 - ECD_03871 0.64 +0.1
4,103,469 + ECD_03871 0.64 -1.1
4,103,560 - ECD_03871 0.69 -2.2
4,103,746 + ECD_03871 0.79 -0.1
4,103,746 + ECD_03871 0.79 +0.1
4,103,797 - ECD_03871 0.81 +0.0
4,103,801 + ECD_03871 0.82 -1.5
4,103,802 - ECD_03871 0.82 +0.1
4,103,863 + ECD_03871 0.85 +0.1
4,103,864 - ECD_03871 0.85 +0.2
4,103,864 - ECD_03871 0.85 +0.2
4,103,864 - ECD_03871 0.85 -0.7
4,103,987 - +1.2
4,104,051 - -1.2
4,104,051 - +0.4
4,104,051 - +0.5
4,104,051 - +0.3
4,104,051 - +0.9
4,104,097 - -1.7
4,104,150 + +0.3
4,104,150 + -0.1
4,104,150 + +0.3
4,104,150 + -0.0
4,104,150 + +0.1
4,104,150 + -0.1
4,104,151 - +0.8
4,104,151 - +0.8
4,104,151 - +0.4
4,104,151 - +0.1
4,104,151 - +0.4
4,104,151 - -0.9
4,104,168 + +0.4
4,104,239 - +0.2
4,104,239 - -0.1
4,104,261 - -1.4
4,104,261 - +1.1
4,104,261 - +1.0
4,104,293 - +0.3
4,104,358 + -0.3
4,104,358 + +0.1
4,104,371 - -0.3
4,104,435 - ECD_03872 0.11 -0.5
4,104,506 + ECD_03872 0.26 -0.1
4,104,541 + ECD_03872 0.33 +0.1
4,104,551 + ECD_03872 0.35 -0.1
4,104,647 + ECD_03872 0.55 -0.2
4,104,648 - ECD_03872 0.55 +0.2
4,104,670 + ECD_03872 0.60 +0.3
4,104,671 - ECD_03872 0.60 -0.0
4,104,725 - ECD_03872 0.71 -0.1
4,104,725 - ECD_03872 0.71 +0.1
4,104,760 + ECD_03872 0.79 +0.2
4,104,760 + ECD_03872 0.79 +0.0
4,104,761 - ECD_03872 0.79 +0.4
4,104,761 - ECD_03872 0.79 +0.2
4,104,763 + ECD_03872 0.79 -0.3
4,104,782 + ECD_03872 0.83 +0.9
4,104,782 + ECD_03872 0.83 +0.3
4,104,782 + ECD_03872 0.83 +0.1
4,104,782 + ECD_03872 0.83 -0.2
4,104,782 + ECD_03872 0.83 -0.2
4,104,783 - ECD_03872 0.84 -0.6
4,104,783 - ECD_03872 0.84 -0.2
4,104,783 - ECD_03872 0.84 -0.7
4,104,783 - ECD_03872 0.84 +0.1
4,104,786 + ECD_03872 0.84 -0.1
4,104,786 + ECD_03872 0.84 -0.3
4,104,786 + ECD_03872 0.84 -0.8
4,104,786 + ECD_03872 0.84 -0.7
4,104,786 + ECD_03872 0.84 -0.2
4,104,786 + ECD_03872 0.84 -1.0
4,104,786 + ECD_03872 0.84 -0.8
4,104,786 + ECD_03872 0.84 -0.6
4,104,786 + ECD_03872 0.84 -0.0
4,104,786 + ECD_03872 0.84 -0.0
4,104,787 - ECD_03872 0.84 -0.9
4,104,787 - ECD_03872 0.84 -0.8
4,104,787 - ECD_03872 0.84 -0.1
4,104,787 - ECD_03872 0.84 +0.0
4,104,787 - ECD_03872 0.84 -0.0
4,104,787 - ECD_03872 0.84 -0.5
4,104,787 - ECD_03872 0.84 -0.5
4,104,787 - ECD_03872 0.84 -0.5
4,104,787 - ECD_03872 0.84 +0.4
4,104,787 - ECD_03872 0.84 -0.0
4,104,787 - ECD_03872 0.84 -0.0
4,104,787 - ECD_03872 0.84 -0.0
4,104,787 - ECD_03872 0.84 +0.5
4,104,792 + ECD_03872 0.86 -0.7
4,104,815 + +0.3
4,104,816 - -0.2
4,104,855 - +0.7
4,104,942 + -0.4
4,104,942 + -0.1
4,104,943 - -0.2
4,104,954 + +0.1
4,104,954 + +0.5
4,104,955 - +0.5
4,104,955 - +0.4
4,105,122 - ECD_03873 0.22 +0.3
4,105,124 + ECD_03873 0.22 +0.2
4,105,124 + ECD_03873 0.22 -0.9
4,105,125 - ECD_03873 0.22 -0.8
4,105,125 - ECD_03873 0.22 -0.3
4,105,157 + ECD_03873 0.26 -1.3
4,105,157 + ECD_03873 0.26 -0.6
4,105,212 - ECD_03873 0.33 +0.8
4,105,212 - ECD_03873 0.33 +0.3
4,105,212 - ECD_03873 0.33 -0.4
4,105,212 - ECD_03873 0.33 +0.5
4,105,243 + ECD_03873 0.37 -0.4
4,105,244 - ECD_03873 0.37 +0.2
4,105,244 - ECD_03873 0.37 -0.9
4,105,244 - ECD_03873 0.37 +0.8
4,105,244 - ECD_03873 0.37 -0.1
4,105,322 - ECD_03873 0.47 -0.2
4,105,347 + ECD_03873 0.51 +0.7
4,105,348 - ECD_03873 0.51 +0.8
4,105,421 + ECD_03873 0.60 +0.0
4,105,422 - ECD_03873 0.60 -0.1
4,105,422 - ECD_03873 0.60 +0.4
4,105,498 - ECD_03873 0.70 +0.5
4,105,498 - ECD_03873 0.70 -0.3
4,105,576 + ECD_03873 0.80 +0.1
4,105,636 + ECD_03873 0.88 +0.7
4,105,688 + -0.3
4,105,688 + -1.0
4,105,688 + +0.6
4,105,688 + -0.1
4,105,688 + +0.3
4,105,689 - -0.3
4,105,696 - -0.2
4,105,696 - +0.3
4,105,696 - -0.5
4,105,720 + +0.4
4,105,732 + +0.1
4,105,732 + +1.4
4,105,732 + +0.3
4,105,733 - -2.9

Or see this region's nucleotide sequence