Strain Fitness in Escherichia coli BL21 around ECD_02548

Experiment: Bas14

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02547 and ECD_02548 are separated by 127 nucleotidesECD_02548 and ECD_02549 are separated by 68 nucleotides ECD_02547: ECD_02547 - alanyl-tRNA synthetase, at 2,659,347 to 2,661,977 _02547 ECD_02548: ECD_02548 - regulatory protein for RecA, at 2,662,105 to 2,662,605 _02548 ECD_02549: ECD_02549 - DNA recombination and repair protein; ssDNA-dependent ATPase; synaptase; ssDNA and dsDNA binding protein; ATP-dependent homologous DNA strand exchanger; recombinase A; LexA autocleavage cofactor, at 2,662,674 to 2,663,735 _02549 Position (kb) 2662 2663Strain fitness (log2 ratio) -2 -1 0 1at 2662.046 kb on - strandat 2662.046 kb on - strandat 2662.063 kb on - strandat 2662.063 kb on - strandat 2662.063 kb on - strandat 2662.063 kb on - strandat 2662.063 kb on - strandat 2662.063 kb on - strandat 2662.063 kb on - strandat 2662.093 kb on + strandat 2662.093 kb on + strandat 2662.093 kb on + strandat 2662.093 kb on + strandat 2662.093 kb on + strandat 2662.093 kb on + strandat 2662.094 kb on - strandat 2662.098 kb on + strandat 2662.161 kb on - strand, within ECD_02548at 2662.305 kb on + strand, within ECD_02548at 2662.333 kb on - strand, within ECD_02548at 2662.403 kb on + strand, within ECD_02548at 2662.404 kb on - strand, within ECD_02548at 2662.440 kb on - strand, within ECD_02548at 2662.485 kb on + strand, within ECD_02548at 2662.503 kb on + strand, within ECD_02548at 2662.574 kb on + strandat 2662.575 kb on - strandat 2662.575 kb on - strandat 2662.611 kb on - strandat 2662.616 kb on + strandat 2662.616 kb on + strandat 2662.616 kb on + strandat 2662.617 kb on - strandat 2662.617 kb on - strandat 2662.617 kb on - strandat 2662.617 kb on - strandat 2662.617 kb on - strandat 2662.623 kb on + strandat 2662.624 kb on - strandat 2662.656 kb on - strandat 2662.656 kb on - strandat 2662.656 kb on - strandat 2662.656 kb on - strandat 2662.659 kb on + strandat 2662.659 kb on + strandat 2662.660 kb on - strandat 2662.660 kb on - strandat 2662.660 kb on - strandat 2662.660 kb on - strandat 2662.660 kb on - strandat 2662.717 kb on - strandat 2662.717 kb on - strandat 2662.717 kb on - strandat 2662.717 kb on - strandat 2662.800 kb on - strand, within ECD_02549at 2662.800 kb on - strand, within ECD_02549at 2662.856 kb on - strand, within ECD_02549at 2662.856 kb on - strand, within ECD_02549at 2662.862 kb on - strand, within ECD_02549at 2662.862 kb on - strand, within ECD_02549at 2662.862 kb on - strand, within ECD_02549at 2662.862 kb on - strand, within ECD_02549at 2662.897 kb on - strand, within ECD_02549at 2662.897 kb on - strand, within ECD_02549at 2662.897 kb on - strand, within ECD_02549at 2662.922 kb on - strand, within ECD_02549at 2662.922 kb on - strand, within ECD_02549at 2662.932 kb on - strand, within ECD_02549at 2662.932 kb on - strand, within ECD_02549at 2663.081 kb on - strand, within ECD_02549at 2663.081 kb on - strand, within ECD_02549at 2663.225 kb on + strand, within ECD_02549at 2663.225 kb on + strand, within ECD_02549at 2663.225 kb on + strand, within ECD_02549at 2663.225 kb on + strand, within ECD_02549at 2663.225 kb on + strand, within ECD_02549at 2663.225 kb on + strand, within ECD_02549at 2663.226 kb on - strand, within ECD_02549at 2663.226 kb on - strand, within ECD_02549at 2663.226 kb on - strand, within ECD_02549at 2663.226 kb on - strand, within ECD_02549at 2663.226 kb on - strand, within ECD_02549at 2663.226 kb on - strand, within ECD_02549at 2663.226 kb on - strand, within ECD_02549at 2663.226 kb on - strand, within ECD_02549at 2663.226 kb on - strand, within ECD_02549at 2663.226 kb on - strand, within ECD_02549at 2663.226 kb on - strand, within ECD_02549at 2663.226 kb on - strand, within ECD_02549at 2663.226 kb on - strand, within ECD_02549at 2663.319 kb on + strand, within ECD_02549at 2663.320 kb on - strand, within ECD_02549at 2663.320 kb on - strand, within ECD_02549at 2663.418 kb on - strand, within ECD_02549at 2663.418 kb on - strand, within ECD_02549at 2663.418 kb on - strand, within ECD_02549at 2663.418 kb on - strand, within ECD_02549at 2663.418 kb on - strand, within ECD_02549at 2663.425 kb on + strand, within ECD_02549at 2663.425 kb on + strand, within ECD_02549at 2663.426 kb on - strand, within ECD_02549at 2663.426 kb on - strand, within ECD_02549at 2663.426 kb on - strand, within ECD_02549at 2663.426 kb on - strand, within ECD_02549at 2663.426 kb on - strand, within ECD_02549at 2663.426 kb on - strand, within ECD_02549at 2663.426 kb on - strand, within ECD_02549at 2663.426 kb on - strand, within ECD_02549at 2663.426 kb on - strand, within ECD_02549at 2663.426 kb on - strand, within ECD_02549at 2663.426 kb on - strand, within ECD_02549at 2663.471 kb on + strand, within ECD_02549at 2663.471 kb on + strand, within ECD_02549at 2663.519 kb on + strand, within ECD_02549

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas14
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2,662,046 - -0.4
2,662,046 - +0.6
2,662,063 - -0.3
2,662,063 - -0.5
2,662,063 - +0.3
2,662,063 - +0.1
2,662,063 - -0.0
2,662,063 - +0.1
2,662,063 - -0.2
2,662,093 + -0.3
2,662,093 + +0.0
2,662,093 + -0.6
2,662,093 + +0.7
2,662,093 + -0.1
2,662,093 + -0.1
2,662,094 - -0.3
2,662,098 + +0.1
2,662,161 - ECD_02548 0.11 -0.5
2,662,305 + ECD_02548 0.40 +1.1
2,662,333 - ECD_02548 0.46 -0.0
2,662,403 + ECD_02548 0.59 -0.4
2,662,404 - ECD_02548 0.60 -1.0
2,662,440 - ECD_02548 0.67 -0.9
2,662,485 + ECD_02548 0.76 -1.3
2,662,503 + ECD_02548 0.79 -0.2
2,662,574 + -1.0
2,662,575 - -1.8
2,662,575 - -0.7
2,662,611 - +0.1
2,662,616 + -0.4
2,662,616 + -0.4
2,662,616 + +0.2
2,662,617 - +0.4
2,662,617 - -0.5
2,662,617 - +0.8
2,662,617 - +0.9
2,662,617 - +0.3
2,662,623 + -1.1
2,662,624 - +0.8
2,662,656 - +0.9
2,662,656 - +0.7
2,662,656 - +0.3
2,662,656 - +0.5
2,662,659 + +1.2
2,662,659 + +1.4
2,662,660 - +0.0
2,662,660 - -0.1
2,662,660 - +0.0
2,662,660 - +0.5
2,662,660 - -1.2
2,662,717 - +1.1
2,662,717 - +0.5
2,662,717 - +0.2
2,662,717 - -0.4
2,662,800 - ECD_02549 0.12 -0.9
2,662,800 - ECD_02549 0.12 -0.2
2,662,856 - ECD_02549 0.17 +0.3
2,662,856 - ECD_02549 0.17 -0.5
2,662,862 - ECD_02549 0.18 -2.6
2,662,862 - ECD_02549 0.18 -0.1
2,662,862 - ECD_02549 0.18 +0.3
2,662,862 - ECD_02549 0.18 -1.4
2,662,897 - ECD_02549 0.21 -1.3
2,662,897 - ECD_02549 0.21 -0.9
2,662,897 - ECD_02549 0.21 -0.6
2,662,922 - ECD_02549 0.23 -0.3
2,662,922 - ECD_02549 0.23 -0.3
2,662,932 - ECD_02549 0.24 +0.5
2,662,932 - ECD_02549 0.24 -0.5
2,663,081 - ECD_02549 0.38 -0.3
2,663,081 - ECD_02549 0.38 -0.3
2,663,225 + ECD_02549 0.52 +1.3
2,663,225 + ECD_02549 0.52 -0.5
2,663,225 + ECD_02549 0.52 +0.5
2,663,225 + ECD_02549 0.52 +0.8
2,663,225 + ECD_02549 0.52 -0.2
2,663,225 + ECD_02549 0.52 +0.5
2,663,226 - ECD_02549 0.52 +0.5
2,663,226 - ECD_02549 0.52 -0.7
2,663,226 - ECD_02549 0.52 -0.2
2,663,226 - ECD_02549 0.52 +0.2
2,663,226 - ECD_02549 0.52 -0.9
2,663,226 - ECD_02549 0.52 +1.1
2,663,226 - ECD_02549 0.52 +0.7
2,663,226 - ECD_02549 0.52 +0.1
2,663,226 - ECD_02549 0.52 +0.3
2,663,226 - ECD_02549 0.52 +0.7
2,663,226 - ECD_02549 0.52 +1.1
2,663,226 - ECD_02549 0.52 +0.1
2,663,226 - ECD_02549 0.52 -1.0
2,663,319 + ECD_02549 0.61 +1.1
2,663,320 - ECD_02549 0.61 +0.5
2,663,320 - ECD_02549 0.61 -0.9
2,663,418 - ECD_02549 0.70 -0.9
2,663,418 - ECD_02549 0.70 +1.4
2,663,418 - ECD_02549 0.70 -0.7
2,663,418 - ECD_02549 0.70 +0.1
2,663,418 - ECD_02549 0.70 -0.2
2,663,425 + ECD_02549 0.71 -0.3
2,663,425 + ECD_02549 0.71 -0.5
2,663,426 - ECD_02549 0.71 -0.6
2,663,426 - ECD_02549 0.71 +0.1
2,663,426 - ECD_02549 0.71 -0.5
2,663,426 - ECD_02549 0.71 -0.1
2,663,426 - ECD_02549 0.71 -0.9
2,663,426 - ECD_02549 0.71 -0.3
2,663,426 - ECD_02549 0.71 -1.8
2,663,426 - ECD_02549 0.71 -1.0
2,663,426 - ECD_02549 0.71 +0.3
2,663,426 - ECD_02549 0.71 +0.7
2,663,426 - ECD_02549 0.71 -0.8
2,663,471 + ECD_02549 0.75 +0.2
2,663,471 + ECD_02549 0.75 -0.3
2,663,519 + ECD_02549 0.80 +0.7

Or see this region's nucleotide sequence