Experiment: Bas14
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02547 and ECD_02548 are separated by 127 nucleotides ECD_02548 and ECD_02549 are separated by 68 nucleotides
ECD_02547: ECD_02547 - alanyl-tRNA synthetase, at 2,659,347 to 2,661,977
_02547
ECD_02548: ECD_02548 - regulatory protein for RecA, at 2,662,105 to 2,662,605
_02548
ECD_02549: ECD_02549 - DNA recombination and repair protein; ssDNA-dependent ATPase; synaptase; ssDNA and dsDNA binding protein; ATP-dependent homologous DNA strand exchanger; recombinase A; LexA autocleavage cofactor, at 2,662,674 to 2,663,735
_02549
Position (kb)
2662
2663 Strain fitness (log2 ratio)
-2
-1
0
1 at 2662.046 kb on - strand at 2662.046 kb on - strand at 2662.063 kb on - strand at 2662.063 kb on - strand at 2662.063 kb on - strand at 2662.063 kb on - strand at 2662.063 kb on - strand at 2662.063 kb on - strand at 2662.063 kb on - strand at 2662.093 kb on + strand at 2662.093 kb on + strand at 2662.093 kb on + strand at 2662.093 kb on + strand at 2662.093 kb on + strand at 2662.093 kb on + strand at 2662.094 kb on - strand at 2662.098 kb on + strand at 2662.161 kb on - strand, within ECD_02548 at 2662.305 kb on + strand, within ECD_02548 at 2662.333 kb on - strand, within ECD_02548 at 2662.403 kb on + strand, within ECD_02548 at 2662.404 kb on - strand, within ECD_02548 at 2662.440 kb on - strand, within ECD_02548 at 2662.485 kb on + strand, within ECD_02548 at 2662.503 kb on + strand, within ECD_02548 at 2662.574 kb on + strand at 2662.575 kb on - strand at 2662.575 kb on - strand at 2662.611 kb on - strand at 2662.616 kb on + strand at 2662.616 kb on + strand at 2662.616 kb on + strand at 2662.617 kb on - strand at 2662.617 kb on - strand at 2662.617 kb on - strand at 2662.617 kb on - strand at 2662.617 kb on - strand at 2662.623 kb on + strand at 2662.624 kb on - strand at 2662.656 kb on - strand at 2662.656 kb on - strand at 2662.656 kb on - strand at 2662.656 kb on - strand at 2662.659 kb on + strand at 2662.659 kb on + strand at 2662.660 kb on - strand at 2662.660 kb on - strand at 2662.660 kb on - strand at 2662.660 kb on - strand at 2662.660 kb on - strand at 2662.717 kb on - strand at 2662.717 kb on - strand at 2662.717 kb on - strand at 2662.717 kb on - strand at 2662.800 kb on - strand, within ECD_02549 at 2662.800 kb on - strand, within ECD_02549 at 2662.856 kb on - strand, within ECD_02549 at 2662.856 kb on - strand, within ECD_02549 at 2662.862 kb on - strand, within ECD_02549 at 2662.862 kb on - strand, within ECD_02549 at 2662.862 kb on - strand, within ECD_02549 at 2662.862 kb on - strand, within ECD_02549 at 2662.897 kb on - strand, within ECD_02549 at 2662.897 kb on - strand, within ECD_02549 at 2662.897 kb on - strand, within ECD_02549 at 2662.922 kb on - strand, within ECD_02549 at 2662.922 kb on - strand, within ECD_02549 at 2662.932 kb on - strand, within ECD_02549 at 2662.932 kb on - strand, within ECD_02549 at 2663.081 kb on - strand, within ECD_02549 at 2663.081 kb on - strand, within ECD_02549 at 2663.225 kb on + strand, within ECD_02549 at 2663.225 kb on + strand, within ECD_02549 at 2663.225 kb on + strand, within ECD_02549 at 2663.225 kb on + strand, within ECD_02549 at 2663.225 kb on + strand, within ECD_02549 at 2663.225 kb on + strand, within ECD_02549 at 2663.226 kb on - strand, within ECD_02549 at 2663.226 kb on - strand, within ECD_02549 at 2663.226 kb on - strand, within ECD_02549 at 2663.226 kb on - strand, within ECD_02549 at 2663.226 kb on - strand, within ECD_02549 at 2663.226 kb on - strand, within ECD_02549 at 2663.226 kb on - strand, within ECD_02549 at 2663.226 kb on - strand, within ECD_02549 at 2663.226 kb on - strand, within ECD_02549 at 2663.226 kb on - strand, within ECD_02549 at 2663.226 kb on - strand, within ECD_02549 at 2663.226 kb on - strand, within ECD_02549 at 2663.226 kb on - strand, within ECD_02549 at 2663.319 kb on + strand, within ECD_02549 at 2663.320 kb on - strand, within ECD_02549 at 2663.320 kb on - strand, within ECD_02549 at 2663.418 kb on - strand, within ECD_02549 at 2663.418 kb on - strand, within ECD_02549 at 2663.418 kb on - strand, within ECD_02549 at 2663.418 kb on - strand, within ECD_02549 at 2663.418 kb on - strand, within ECD_02549 at 2663.425 kb on + strand, within ECD_02549 at 2663.425 kb on + strand, within ECD_02549 at 2663.426 kb on - strand, within ECD_02549 at 2663.426 kb on - strand, within ECD_02549 at 2663.426 kb on - strand, within ECD_02549 at 2663.426 kb on - strand, within ECD_02549 at 2663.426 kb on - strand, within ECD_02549 at 2663.426 kb on - strand, within ECD_02549 at 2663.426 kb on - strand, within ECD_02549 at 2663.426 kb on - strand, within ECD_02549 at 2663.426 kb on - strand, within ECD_02549 at 2663.426 kb on - strand, within ECD_02549 at 2663.426 kb on - strand, within ECD_02549 at 2663.471 kb on + strand, within ECD_02549 at 2663.471 kb on + strand, within ECD_02549 at 2663.519 kb on + strand, within ECD_02549
Per-strain Table
Position Strand Gene LocusTag Fraction Bas14 remove 2,662,046 - -0.4 2,662,046 - +0.6 2,662,063 - -0.3 2,662,063 - -0.5 2,662,063 - +0.3 2,662,063 - +0.1 2,662,063 - -0.0 2,662,063 - +0.1 2,662,063 - -0.2 2,662,093 + -0.3 2,662,093 + +0.0 2,662,093 + -0.6 2,662,093 + +0.7 2,662,093 + -0.1 2,662,093 + -0.1 2,662,094 - -0.3 2,662,098 + +0.1 2,662,161 - ECD_02548 0.11 -0.5 2,662,305 + ECD_02548 0.40 +1.1 2,662,333 - ECD_02548 0.46 -0.0 2,662,403 + ECD_02548 0.59 -0.4 2,662,404 - ECD_02548 0.60 -1.0 2,662,440 - ECD_02548 0.67 -0.9 2,662,485 + ECD_02548 0.76 -1.3 2,662,503 + ECD_02548 0.79 -0.2 2,662,574 + -1.0 2,662,575 - -1.8 2,662,575 - -0.7 2,662,611 - +0.1 2,662,616 + -0.4 2,662,616 + -0.4 2,662,616 + +0.2 2,662,617 - +0.4 2,662,617 - -0.5 2,662,617 - +0.8 2,662,617 - +0.9 2,662,617 - +0.3 2,662,623 + -1.1 2,662,624 - +0.8 2,662,656 - +0.9 2,662,656 - +0.7 2,662,656 - +0.3 2,662,656 - +0.5 2,662,659 + +1.2 2,662,659 + +1.4 2,662,660 - +0.0 2,662,660 - -0.1 2,662,660 - +0.0 2,662,660 - +0.5 2,662,660 - -1.2 2,662,717 - +1.1 2,662,717 - +0.5 2,662,717 - +0.2 2,662,717 - -0.4 2,662,800 - ECD_02549 0.12 -0.9 2,662,800 - ECD_02549 0.12 -0.2 2,662,856 - ECD_02549 0.17 +0.3 2,662,856 - ECD_02549 0.17 -0.5 2,662,862 - ECD_02549 0.18 -2.6 2,662,862 - ECD_02549 0.18 -0.1 2,662,862 - ECD_02549 0.18 +0.3 2,662,862 - ECD_02549 0.18 -1.4 2,662,897 - ECD_02549 0.21 -1.3 2,662,897 - ECD_02549 0.21 -0.9 2,662,897 - ECD_02549 0.21 -0.6 2,662,922 - ECD_02549 0.23 -0.3 2,662,922 - ECD_02549 0.23 -0.3 2,662,932 - ECD_02549 0.24 +0.5 2,662,932 - ECD_02549 0.24 -0.5 2,663,081 - ECD_02549 0.38 -0.3 2,663,081 - ECD_02549 0.38 -0.3 2,663,225 + ECD_02549 0.52 +1.3 2,663,225 + ECD_02549 0.52 -0.5 2,663,225 + ECD_02549 0.52 +0.5 2,663,225 + ECD_02549 0.52 +0.8 2,663,225 + ECD_02549 0.52 -0.2 2,663,225 + ECD_02549 0.52 +0.5 2,663,226 - ECD_02549 0.52 +0.5 2,663,226 - ECD_02549 0.52 -0.7 2,663,226 - ECD_02549 0.52 -0.2 2,663,226 - ECD_02549 0.52 +0.2 2,663,226 - ECD_02549 0.52 -0.9 2,663,226 - ECD_02549 0.52 +1.1 2,663,226 - ECD_02549 0.52 +0.7 2,663,226 - ECD_02549 0.52 +0.1 2,663,226 - ECD_02549 0.52 +0.3 2,663,226 - ECD_02549 0.52 +0.7 2,663,226 - ECD_02549 0.52 +1.1 2,663,226 - ECD_02549 0.52 +0.1 2,663,226 - ECD_02549 0.52 -1.0 2,663,319 + ECD_02549 0.61 +1.1 2,663,320 - ECD_02549 0.61 +0.5 2,663,320 - ECD_02549 0.61 -0.9 2,663,418 - ECD_02549 0.70 -0.9 2,663,418 - ECD_02549 0.70 +1.4 2,663,418 - ECD_02549 0.70 -0.7 2,663,418 - ECD_02549 0.70 +0.1 2,663,418 - ECD_02549 0.70 -0.2 2,663,425 + ECD_02549 0.71 -0.3 2,663,425 + ECD_02549 0.71 -0.5 2,663,426 - ECD_02549 0.71 -0.6 2,663,426 - ECD_02549 0.71 +0.1 2,663,426 - ECD_02549 0.71 -0.5 2,663,426 - ECD_02549 0.71 -0.1 2,663,426 - ECD_02549 0.71 -0.9 2,663,426 - ECD_02549 0.71 -0.3 2,663,426 - ECD_02549 0.71 -1.8 2,663,426 - ECD_02549 0.71 -1.0 2,663,426 - ECD_02549 0.71 +0.3 2,663,426 - ECD_02549 0.71 +0.7 2,663,426 - ECD_02549 0.71 -0.8 2,663,471 + ECD_02549 0.75 +0.2 2,663,471 + ECD_02549 0.75 -0.3 2,663,519 + ECD_02549 0.80 +0.7
Or see this region's nucleotide sequence