Experiment: Bas14
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02478 and ECD_02479 are separated by 113 nucleotides ECD_02479 and ECD_02480 are separated by 96 nucleotides ECD_02480 and ECD_02481 overlap by 4 nucleotides
ECD_02478: ECD_02478 - protein lysine acetyltransferase, at 2,586,553 to 2,589,213
_02478
ECD_02479: ECD_02479 - phosphatidylserine synthase; CDP-diacylglycerol-serine O-phosphatidyltransferase, at 2,589,327 to 2,590,682
_02479
ECD_02480: ECD_02480 - putative lipoprotein, at 2,590,779 to 2,591,051
_02480
ECD_02481: ECD_02481 - alpha-ketoglutarate transporter, at 2,591,048 to 2,592,346
_02481
Position (kb)
2589
2590
2591 Strain fitness (log2 ratio)
-1
0
1
2 at 2588.809 kb on + strand, within ECD_02478 at 2588.838 kb on + strand, within ECD_02478 at 2588.910 kb on + strand, within ECD_02478 at 2588.910 kb on + strand, within ECD_02478 at 2589.020 kb on + strand at 2589.020 kb on + strand at 2589.052 kb on + strand at 2589.072 kb on - strand at 2589.090 kb on + strand at 2590.860 kb on + strand, within ECD_02480 at 2591.195 kb on + strand, within ECD_02481 at 2591.198 kb on - strand, within ECD_02481 at 2591.215 kb on - strand, within ECD_02481 at 2591.465 kb on - strand, within ECD_02481 at 2591.551 kb on + strand, within ECD_02481 at 2591.552 kb on - strand, within ECD_02481
Per-strain Table
Position Strand Gene LocusTag Fraction Bas14 remove 2,588,809 + ECD_02478 0.85 -0.4 2,588,838 + ECD_02478 0.86 -1.3 2,588,910 + ECD_02478 0.89 +0.8 2,588,910 + ECD_02478 0.89 +0.8 2,589,020 + +0.9 2,589,020 + +0.7 2,589,052 + +1.8 2,589,072 - -0.0 2,589,090 + +0.6 2,590,860 + ECD_02480 0.30 +0.0 2,591,195 + ECD_02481 0.11 +0.8 2,591,198 - ECD_02481 0.12 +0.1 2,591,215 - ECD_02481 0.13 +0.1 2,591,465 - ECD_02481 0.32 +0.1 2,591,551 + ECD_02481 0.39 -0.2 2,591,552 - ECD_02481 0.39 +0.4
Or see this region's nucleotide sequence