Strain Fitness in Escherichia coli BL21 around ECD_02286

Experiment: Bas14

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02285 and ECD_02286 are separated by 295 nucleotidesECD_02286 and ECD_02287 are separated by 76 nucleotidesECD_02287 and ECD_02288 are separated by 352 nucleotides ECD_02285: ECD_02285 - uncharacterized protein, at 2,371,655 to 2,372,287 _02285 ECD_02286: ECD_02286 - putative lipoprotein involved in colanic acid biosynthesis, at 2,372,583 to 2,372,858 _02286 ECD_02287: ECD_02287 - DUF2545 family putative inner membrane protein, at 2,372,935 to 2,373,177 _02287 ECD_02288: ECD_02288 - palmitoleoyl-acyl carrier protein (ACP)-dependent acyltransferase, at 2,373,530 to 2,374,450 _02288 Position (kb) 2372 2373Strain fitness (log2 ratio) -2 -1 0 1at 2371.731 kb on + strand, within ECD_02285at 2372.813 kb on + strand, within ECD_02286at 2372.998 kb on - strand, within ECD_02287at 2373.047 kb on + strand, within ECD_02287at 2373.051 kb on - strand, within ECD_02287at 2373.167 kb on - strandat 2373.167 kb on - strandat 2373.167 kb on - strandat 2373.171 kb on - strandat 2373.367 kb on - strandat 2373.517 kb on - strandat 2373.526 kb on - strandat 2373.530 kb on - strandat 2373.564 kb on + strandat 2373.603 kb on + strandat 2373.603 kb on + strandat 2373.630 kb on - strand, within ECD_02288at 2373.845 kb on - strand, within ECD_02288

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas14
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2,371,731 + ECD_02285 0.12 +0.5
2,372,813 + ECD_02286 0.83 -2.7
2,372,998 - ECD_02287 0.26 +0.5
2,373,047 + ECD_02287 0.46 +0.3
2,373,051 - ECD_02287 0.48 -1.1
2,373,167 - +0.4
2,373,167 - +0.8
2,373,167 - +0.5
2,373,171 - +0.2
2,373,367 - -0.4
2,373,517 - +0.6
2,373,526 - -0.3
2,373,530 - +0.4
2,373,564 + +0.2
2,373,603 + +0.5
2,373,603 + +0.6
2,373,630 - ECD_02288 0.11 -0.3
2,373,845 - ECD_02288 0.34 -0.0

Or see this region's nucleotide sequence