Strain Fitness in Escherichia coli BL21 around ECD_02273

Experiment: Bas14

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02272 and ECD_02273 are separated by 293 nucleotidesECD_02273 and ECD_t00038 are separated by 75 nucleotidesECD_t00038 and ECD_02274 are separated by 95 nucleotides ECD_02272: ECD_02272 - ABC transporter maintaining OM lipid asymmetry, OM lipoprotein component, at 2,352,355 to 2,353,110 _02272 ECD_02273: ECD_02273 - putative inner membrane protein, at 2,353,404 to 2,354,336 _02273 ECD_t00038: ECD_t00038 - tRNA-Arg, at 2,354,412 to 2,354,486 _t00038 ECD_02274: ECD_02274 - dsd operon activator; autorepressor, at 2,354,582 to 2,355,517 _02274 Position (kb) 2353 2354 2355Strain fitness (log2 ratio) -2 -1 0 1 2at 2352.672 kb on - strand, within ECD_02272at 2352.706 kb on - strand, within ECD_02272at 2352.769 kb on - strand, within ECD_02272at 2352.852 kb on - strand, within ECD_02272at 2352.856 kb on - strand, within ECD_02272at 2352.856 kb on - strand, within ECD_02272at 2352.907 kb on - strand, within ECD_02272at 2352.926 kb on + strand, within ECD_02272at 2352.927 kb on - strand, within ECD_02272at 2352.961 kb on - strand, within ECD_02272at 2352.970 kb on + strand, within ECD_02272at 2352.993 kb on - strand, within ECD_02272at 2352.993 kb on - strand, within ECD_02272at 2353.137 kb on + strandat 2353.138 kb on - strandat 2353.183 kb on + strandat 2353.200 kb on - strandat 2353.277 kb on - strandat 2353.333 kb on + strandat 2353.376 kb on + strandat 2353.377 kb on - strandat 2353.378 kb on + strandat 2353.379 kb on - strandat 2353.486 kb on + strandat 2353.624 kb on + strand, within ECD_02273at 2353.698 kb on - strand, within ECD_02273at 2353.811 kb on + strand, within ECD_02273at 2353.812 kb on - strand, within ECD_02273at 2353.813 kb on + strand, within ECD_02273at 2353.814 kb on - strand, within ECD_02273at 2353.859 kb on + strand, within ECD_02273at 2353.881 kb on + strand, within ECD_02273at 2353.883 kb on + strand, within ECD_02273at 2353.883 kb on + strand, within ECD_02273at 2353.884 kb on - strand, within ECD_02273at 2353.884 kb on - strand, within ECD_02273at 2354.003 kb on + strand, within ECD_02273at 2354.004 kb on - strand, within ECD_02273at 2354.004 kb on - strand, within ECD_02273at 2354.051 kb on + strand, within ECD_02273at 2354.181 kb on - strand, within ECD_02273at 2354.369 kb on + strandat 2354.419 kb on + strandat 2354.423 kb on + strand, within ECD_t00038at 2354.447 kb on + strand, within ECD_t00038at 2354.448 kb on - strand, within ECD_t00038at 2354.504 kb on - strandat 2354.667 kb on + strandat 2354.792 kb on - strand, within ECD_02274at 2354.866 kb on + strand, within ECD_02274at 2354.866 kb on + strand, within ECD_02274at 2354.924 kb on - strand, within ECD_02274at 2354.974 kb on - strand, within ECD_02274at 2354.988 kb on - strand, within ECD_02274at 2354.988 kb on - strand, within ECD_02274at 2354.988 kb on - strand, within ECD_02274at 2354.988 kb on - strand, within ECD_02274at 2355.055 kb on - strand, within ECD_02274at 2355.055 kb on - strand, within ECD_02274at 2355.055 kb on - strand, within ECD_02274at 2355.055 kb on - strand, within ECD_02274at 2355.152 kb on + strand, within ECD_02274at 2355.273 kb on - strand, within ECD_02274

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas14
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2,352,672 - ECD_02272 0.42 +0.5
2,352,706 - ECD_02272 0.46 +0.2
2,352,769 - ECD_02272 0.55 -0.8
2,352,852 - ECD_02272 0.66 +0.7
2,352,856 - ECD_02272 0.66 +0.7
2,352,856 - ECD_02272 0.66 +0.4
2,352,907 - ECD_02272 0.73 +0.3
2,352,926 + ECD_02272 0.76 +0.4
2,352,927 - ECD_02272 0.76 +1.0
2,352,961 - ECD_02272 0.80 +1.7
2,352,970 + ECD_02272 0.81 -0.8
2,352,993 - ECD_02272 0.84 +0.0
2,352,993 - ECD_02272 0.84 -0.2
2,353,137 + -0.7
2,353,138 - -0.3
2,353,183 + +0.2
2,353,200 - +0.3
2,353,277 - -1.0
2,353,333 + -0.5
2,353,376 + -0.1
2,353,377 - +1.2
2,353,378 + +1.1
2,353,379 - -0.1
2,353,486 + -0.1
2,353,624 + ECD_02273 0.24 -1.2
2,353,698 - ECD_02273 0.32 +0.2
2,353,811 + ECD_02273 0.44 -2.3
2,353,812 - ECD_02273 0.44 +0.7
2,353,813 + ECD_02273 0.44 +1.1
2,353,814 - ECD_02273 0.44 +0.1
2,353,859 + ECD_02273 0.49 -0.3
2,353,881 + ECD_02273 0.51 +0.8
2,353,883 + ECD_02273 0.51 +0.5
2,353,883 + ECD_02273 0.51 +0.5
2,353,884 - ECD_02273 0.51 +0.2
2,353,884 - ECD_02273 0.51 +2.2
2,354,003 + ECD_02273 0.64 -0.3
2,354,004 - ECD_02273 0.64 +1.1
2,354,004 - ECD_02273 0.64 +0.1
2,354,051 + ECD_02273 0.69 +0.9
2,354,181 - ECD_02273 0.83 +0.5
2,354,369 + -0.5
2,354,419 + -0.8
2,354,423 + ECD_t00038 0.15 -0.4
2,354,447 + ECD_t00038 0.47 -1.3
2,354,448 - ECD_t00038 0.48 -0.3
2,354,504 - +0.3
2,354,667 + -0.2
2,354,792 - ECD_02274 0.22 -0.0
2,354,866 + ECD_02274 0.30 +0.6
2,354,866 + ECD_02274 0.30 -1.3
2,354,924 - ECD_02274 0.37 +0.8
2,354,974 - ECD_02274 0.42 -0.5
2,354,988 - ECD_02274 0.43 -0.5
2,354,988 - ECD_02274 0.43 +0.1
2,354,988 - ECD_02274 0.43 +0.2
2,354,988 - ECD_02274 0.43 +0.1
2,355,055 - ECD_02274 0.51 -1.3
2,355,055 - ECD_02274 0.51 -0.3
2,355,055 - ECD_02274 0.51 -0.0
2,355,055 - ECD_02274 0.51 -0.6
2,355,152 + ECD_02274 0.61 -1.2
2,355,273 - ECD_02274 0.74 +0.8

Or see this region's nucleotide sequence