Experiment: Bas14
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01617 and ECD_01618 are separated by 48 nucleotides ECD_01618 and ECD_01619 are separated by 102 nucleotides ECD_01619 and ECD_01620 are separated by 36 nucleotides
ECD_01617: ECD_01617 - putative oxidoreductase, at 1,669,932 to 1,670,828
_01617
ECD_01618: ECD_01618 - DUF1289 family protein, at 1,670,877 to 1,671,116
_01618
ECD_01619: ECD_01619 - transcriptional repressor for the nemRA-gloA operon, quinone-, glyoxal-, and HOCl-activated, at 1,671,219 to 1,671,818
_01619
ECD_01620: ECD_01620 - chromate reductase, quinone reductase, FMN-linked; N-Ethylmaleimide reductase; old yellow enzyme, at 1,671,855 to 1,672,952
_01620
Position (kb) 1670
1671
1672 Strain fitness (log2 ratio) -1
0
1 at 1670.165 kb on - strand, within ECD_01617 at 1670.666 kb on - strand, within ECD_01617 at 1670.817 kb on - strand at 1671.319 kb on + strand, within ECD_01619 at 1671.354 kb on + strand, within ECD_01619 at 1671.371 kb on + strand, within ECD_01619 at 1671.371 kb on + strand, within ECD_01619 at 1671.486 kb on + strand, within ECD_01619 at 1671.581 kb on + strand, within ECD_01619 at 1671.581 kb on + strand, within ECD_01619 at 1671.855 kb on - strand at 1671.991 kb on - strand, within ECD_01620
Per-strain Table
Position Strand Gene LocusTag Fraction Bas14 remove 1,670,165 - ECD_01617 0.26 +0.9 1,670,666 - ECD_01617 0.82 -0.1 1,670,817 - -0.5 1,671,319 + ECD_01619 0.17 -0.1 1,671,354 + ECD_01619 0.23 +0.3 1,671,371 + ECD_01619 0.25 -1.3 1,671,371 + ECD_01619 0.25 +0.4 1,671,486 + ECD_01619 0.45 +0.0 1,671,581 + ECD_01619 0.60 +0.1 1,671,581 + ECD_01619 0.60 -0.5 1,671,855 - -0.9 1,671,991 - ECD_01620 0.12 +1.0
Or see this region's nucleotide sequence