Strain Fitness in Escherichia coli BL21 around ECD_01014

Experiment: Bas14

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01012 and ECD_01013 are separated by 7 nucleotidesECD_01013 and ECD_01014 are separated by 11 nucleotidesECD_01014 and ECD_01015 overlap by 1 nucleotides ECD_01012: ECD_01012 - putative reactive intermediate detoxifying aminoacrylate hydrolase, at 1,075,247 to 1,076,047 _01012 ECD_01013: ECD_01013 - putative aminoacrylate deaminase, reactive intermediate detoxification; weak enamine/imine deaminase activity, at 1,076,055 to 1,076,441 _01013 ECD_01014: ECD_01014 - ureidoacrylate amidohydrolase, at 1,076,453 to 1,077,145 _01014 ECD_01015: ECD_01015 - pyrimidine oxygenase, FMN-dependent, at 1,077,145 to 1,078,293 _01015 Position (kb) 1076 1077 1078Strain fitness (log2 ratio) -2 -1 0 1at 1075.477 kb on + strand, within ECD_01012at 1075.501 kb on + strand, within ECD_01012at 1075.867 kb on - strand, within ECD_01012at 1075.892 kb on - strand, within ECD_01012at 1076.204 kb on + strand, within ECD_01013at 1076.324 kb on + strand, within ECD_01013at 1076.325 kb on - strand, within ECD_01013at 1076.356 kb on + strand, within ECD_01013at 1076.356 kb on + strand, within ECD_01013at 1076.356 kb on + strand, within ECD_01013at 1076.357 kb on - strand, within ECD_01013at 1076.357 kb on - strand, within ECD_01013at 1076.848 kb on + strand, within ECD_01014at 1076.913 kb on + strand, within ECD_01014at 1076.914 kb on - strand, within ECD_01014at 1077.038 kb on + strand, within ECD_01014at 1077.060 kb on + strand, within ECD_01014at 1077.520 kb on + strand, within ECD_01015at 1077.520 kb on + strand, within ECD_01015at 1077.520 kb on + strand, within ECD_01015at 1077.520 kb on + strand, within ECD_01015at 1077.520 kb on + strand, within ECD_01015at 1077.521 kb on - strand, within ECD_01015at 1077.797 kb on + strand, within ECD_01015at 1077.830 kb on + strand, within ECD_01015at 1077.967 kb on + strand, within ECD_01015

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas14
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1,075,477 + ECD_01012 0.29 -0.4
1,075,501 + ECD_01012 0.32 -0.6
1,075,867 - ECD_01012 0.77 +0.3
1,075,892 - ECD_01012 0.81 -2.3
1,076,204 + ECD_01013 0.39 +1.5
1,076,324 + ECD_01013 0.70 +0.4
1,076,325 - ECD_01013 0.70 +1.3
1,076,356 + ECD_01013 0.78 +0.0
1,076,356 + ECD_01013 0.78 +0.4
1,076,356 + ECD_01013 0.78 -0.1
1,076,357 - ECD_01013 0.78 -0.7
1,076,357 - ECD_01013 0.78 -0.2
1,076,848 + ECD_01014 0.57 +0.6
1,076,913 + ECD_01014 0.66 +0.2
1,076,914 - ECD_01014 0.67 +0.9
1,077,038 + ECD_01014 0.84 -0.2
1,077,060 + ECD_01014 0.88 -0.0
1,077,520 + ECD_01015 0.33 +0.5
1,077,520 + ECD_01015 0.33 -0.6
1,077,520 + ECD_01015 0.33 +0.2
1,077,520 + ECD_01015 0.33 +0.7
1,077,520 + ECD_01015 0.33 -1.1
1,077,521 - ECD_01015 0.33 -0.1
1,077,797 + ECD_01015 0.57 -1.8
1,077,830 + ECD_01015 0.60 -1.5
1,077,967 + ECD_01015 0.72 +0.4

Or see this region's nucleotide sequence