Experiment: Bas14
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00648 and ECD_00649 overlap by 4 nucleotides ECD_00649 and ECD_00650 are separated by 122 nucleotides ECD_00650 and ECD_00651 are separated by 215 nucleotides
ECD_00648: ECD_00648 - putrescine/proton symporter: putrescine/ornithine antiporter, at 676,820 to 678,139
_00648
ECD_00649: ECD_00649 - ornithine decarboxylase isozyme, inducible, at 678,136 to 680,334
_00649
ECD_00650: ECD_00650 - hypothetical protein, at 680,457 to 680,714
_00650
ECD_00651: ECD_00651 - response regulator in two-component regulatory system with KdpD, at 680,930 to 681,607
_00651
Position (kb) 678
679
680
681 Strain fitness (log2 ratio) -2
-1
0
1 at 677.218 kb on - strand, within ECD_00648 at 677.240 kb on - strand, within ECD_00648 at 677.318 kb on - strand, within ECD_00648 at 677.387 kb on - strand, within ECD_00648 at 677.427 kb on + strand, within ECD_00648 at 677.428 kb on - strand, within ECD_00648 at 677.460 kb on - strand, within ECD_00648 at 677.477 kb on - strand, within ECD_00648 at 677.477 kb on - strand, within ECD_00648 at 677.477 kb on - strand, within ECD_00648 at 677.495 kb on + strand, within ECD_00648 at 677.666 kb on - strand, within ECD_00648 at 677.735 kb on - strand, within ECD_00648 at 677.735 kb on - strand, within ECD_00648 at 677.828 kb on - strand, within ECD_00648 at 677.870 kb on - strand, within ECD_00648 at 677.872 kb on - strand, within ECD_00648 at 677.872 kb on - strand, within ECD_00648 at 677.872 kb on - strand, within ECD_00648 at 677.990 kb on + strand, within ECD_00648 at 678.014 kb on - strand at 678.093 kb on - strand at 678.192 kb on - strand at 678.192 kb on - strand at 678.208 kb on - strand at 678.208 kb on - strand at 678.208 kb on - strand at 678.231 kb on - strand at 678.231 kb on - strand at 678.231 kb on - strand at 678.357 kb on - strand, within ECD_00649 at 678.432 kb on - strand, within ECD_00649 at 678.432 kb on - strand, within ECD_00649 at 678.438 kb on - strand, within ECD_00649 at 678.575 kb on + strand, within ECD_00649 at 678.596 kb on + strand, within ECD_00649 at 678.806 kb on + strand, within ECD_00649 at 678.829 kb on - strand, within ECD_00649 at 678.962 kb on + strand, within ECD_00649 at 678.978 kb on + strand, within ECD_00649 at 679.012 kb on - strand, within ECD_00649 at 679.057 kb on + strand, within ECD_00649 at 679.058 kb on - strand, within ECD_00649 at 679.058 kb on - strand, within ECD_00649 at 679.077 kb on + strand, within ECD_00649 at 679.080 kb on + strand, within ECD_00649 at 679.398 kb on - strand, within ECD_00649 at 679.419 kb on + strand, within ECD_00649 at 679.440 kb on + strand, within ECD_00649 at 679.969 kb on - strand, within ECD_00649 at 679.983 kb on - strand, within ECD_00649 at 681.308 kb on - strand, within ECD_00651 at 681.315 kb on + strand, within ECD_00651
Per-strain Table
Position Strand Gene LocusTag Fraction Bas14 remove 677,218 - ECD_00648 0.30 -1.2 677,240 - ECD_00648 0.32 +0.4 677,318 - ECD_00648 0.38 +1.5 677,387 - ECD_00648 0.43 +0.4 677,427 + ECD_00648 0.46 -1.4 677,428 - ECD_00648 0.46 +0.0 677,460 - ECD_00648 0.48 -0.1 677,477 - ECD_00648 0.50 +0.9 677,477 - ECD_00648 0.50 -0.7 677,477 - ECD_00648 0.50 -0.7 677,495 + ECD_00648 0.51 -0.6 677,666 - ECD_00648 0.64 -0.1 677,735 - ECD_00648 0.69 -0.0 677,735 - ECD_00648 0.69 -2.0 677,828 - ECD_00648 0.76 -0.3 677,870 - ECD_00648 0.80 -1.2 677,872 - ECD_00648 0.80 -0.1 677,872 - ECD_00648 0.80 -2.4 677,872 - ECD_00648 0.80 +0.5 677,990 + ECD_00648 0.89 +0.4 678,014 - +0.8 678,093 - +0.7 678,192 - -0.4 678,192 - +0.8 678,208 - +1.3 678,208 - -0.7 678,208 - -1.1 678,231 - -0.1 678,231 - -0.0 678,231 - +0.3 678,357 - ECD_00649 0.10 -0.1 678,432 - ECD_00649 0.13 -0.5 678,432 - ECD_00649 0.13 -0.3 678,438 - ECD_00649 0.14 +0.5 678,575 + ECD_00649 0.20 -1.0 678,596 + ECD_00649 0.21 -0.1 678,806 + ECD_00649 0.30 -1.6 678,829 - ECD_00649 0.32 -0.4 678,962 + ECD_00649 0.38 +0.0 678,978 + ECD_00649 0.38 +0.1 679,012 - ECD_00649 0.40 +0.2 679,057 + ECD_00649 0.42 -1.6 679,058 - ECD_00649 0.42 +0.4 679,058 - ECD_00649 0.42 -0.2 679,077 + ECD_00649 0.43 +1.0 679,080 + ECD_00649 0.43 -0.0 679,398 - ECD_00649 0.57 -1.1 679,419 + ECD_00649 0.58 -0.2 679,440 + ECD_00649 0.59 -1.6 679,969 - ECD_00649 0.83 -0.2 679,983 - ECD_00649 0.84 +0.5 681,308 - ECD_00651 0.56 -0.2 681,315 + ECD_00651 0.57 -1.8
Or see this region's nucleotide sequence