Experiment: Bas14
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00295 and ECD_00296 are separated by 102 nucleotides ECD_00296 and ECD_00297 are separated by 65 nucleotides
ECD_00295: ECD_00295 - putative cyanate transporter, at 329,527 to 330,681
_00295
ECD_00296: ECD_00296 - thiogalactoside acetyltransferase, at 330,784 to 331,395
_00296
ECD_00297: ECD_00297 - lactose permease, at 331,461 to 332,714
_00297
Position (kb) 330
331
332 Strain fitness (log2 ratio) -2
-1
0
1 at 330.104 kb on + strand, within ECD_00295 at 330.136 kb on + strand, within ECD_00295 at 330.193 kb on + strand, within ECD_00295 at 330.194 kb on - strand, within ECD_00295 at 330.194 kb on - strand, within ECD_00295 at 330.194 kb on - strand, within ECD_00295 at 330.234 kb on - strand, within ECD_00295 at 330.285 kb on + strand, within ECD_00295 at 330.286 kb on - strand, within ECD_00295 at 330.318 kb on - strand, within ECD_00295 at 330.336 kb on - strand, within ECD_00295 at 330.336 kb on - strand, within ECD_00295 at 330.336 kb on - strand, within ECD_00295 at 330.558 kb on + strand, within ECD_00295 at 330.575 kb on - strand at 330.729 kb on - strand at 330.765 kb on - strand at 330.957 kb on + strand, within ECD_00296 at 331.013 kb on + strand, within ECD_00296 at 331.013 kb on + strand, within ECD_00296 at 331.163 kb on - strand, within ECD_00296 at 331.287 kb on + strand, within ECD_00296 at 331.570 kb on + strand at 331.601 kb on + strand, within ECD_00297 at 331.602 kb on - strand, within ECD_00297 at 331.602 kb on - strand, within ECD_00297 at 331.623 kb on - strand, within ECD_00297 at 331.703 kb on + strand, within ECD_00297 at 331.707 kb on - strand, within ECD_00297 at 331.707 kb on - strand, within ECD_00297 at 331.709 kb on - strand, within ECD_00297 at 331.808 kb on + strand, within ECD_00297 at 331.808 kb on + strand, within ECD_00297 at 331.821 kb on - strand, within ECD_00297 at 331.824 kb on - strand, within ECD_00297 at 331.902 kb on - strand, within ECD_00297 at 331.974 kb on - strand, within ECD_00297 at 332.008 kb on + strand, within ECD_00297 at 332.009 kb on - strand, within ECD_00297 at 332.009 kb on - strand, within ECD_00297 at 332.220 kb on - strand, within ECD_00297 at 332.381 kb on + strand, within ECD_00297 at 332.381 kb on + strand, within ECD_00297
Per-strain Table
Position Strand Gene LocusTag Fraction Bas14 remove 330,104 + ECD_00295 0.50 +0.2 330,136 + ECD_00295 0.53 -2.1 330,193 + ECD_00295 0.58 +0.7 330,194 - ECD_00295 0.58 +1.1 330,194 - ECD_00295 0.58 -1.0 330,194 - ECD_00295 0.58 +0.5 330,234 - ECD_00295 0.61 +0.5 330,285 + ECD_00295 0.66 -1.1 330,286 - ECD_00295 0.66 -1.0 330,318 - ECD_00295 0.68 +0.5 330,336 - ECD_00295 0.70 -0.5 330,336 - ECD_00295 0.70 -0.7 330,336 - ECD_00295 0.70 -0.2 330,558 + ECD_00295 0.89 -0.9 330,575 - -0.7 330,729 - +0.5 330,765 - +0.2 330,957 + ECD_00296 0.28 +0.1 331,013 + ECD_00296 0.37 +0.3 331,013 + ECD_00296 0.37 +1.4 331,163 - ECD_00296 0.62 +1.1 331,287 + ECD_00296 0.82 +0.3 331,570 + -0.4 331,601 + ECD_00297 0.11 +0.3 331,602 - ECD_00297 0.11 +0.2 331,602 - ECD_00297 0.11 -0.7 331,623 - ECD_00297 0.13 -0.6 331,703 + ECD_00297 0.19 -0.8 331,707 - ECD_00297 0.20 +0.0 331,707 - ECD_00297 0.20 -0.8 331,709 - ECD_00297 0.20 -0.4 331,808 + ECD_00297 0.28 +0.5 331,808 + ECD_00297 0.28 -0.5 331,821 - ECD_00297 0.29 -0.4 331,824 - ECD_00297 0.29 -0.2 331,902 - ECD_00297 0.35 -0.1 331,974 - ECD_00297 0.41 -0.2 332,008 + ECD_00297 0.44 -1.7 332,009 - ECD_00297 0.44 +0.1 332,009 - ECD_00297 0.44 -0.0 332,220 - ECD_00297 0.61 -0.7 332,381 + ECD_00297 0.73 +0.3 332,381 + ECD_00297 0.73 -0.2
Or see this region's nucleotide sequence