Strain Fitness in Pseudomonas sp. RS175 around PFR28_03895

Experiment: D,L-Malic Acid (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D,L-Malic Acid (C)
4,471,022	-		PFR28_03894	0.41	-0.6
4,471,022	-		PFR28_03894	0.41	+0.7
4,471,024	+		PFR28_03894	0.41	+3.2
4,471,024	+		PFR28_03894	0.41	-2.7
4,471,024	+		PFR28_03894	0.41	+0.6
4,471,024	+		PFR28_03894	0.41	+0.3
4,471,024	+		PFR28_03894	0.41	-0.3
4,471,024	+		PFR28_03894	0.41	-1.1
4,471,024	+		PFR28_03894	0.41	+0.7
4,471,024	+		PFR28_03894	0.41	+0.5
4,471,024	+		PFR28_03894	0.41	+1.1
4,471,025	-		PFR28_03894	0.42	+0.5
4,471,025	-		PFR28_03894	0.42	+0.2
4,471,025	-		PFR28_03894	0.42	-0.6
4,471,025	-		PFR28_03894	0.42	-0.1
4,471,025	-		PFR28_03894	0.42	-0.9
4,471,025	-		PFR28_03894	0.42	-0.6
4,471,025	-		PFR28_03894	0.42	-0.3
4,471,025	-		PFR28_03894	0.42	+0.5
4,471,246	+		PFR28_03894	0.72	-1.3
4,471,246	+		PFR28_03894	0.72	+0.6
4,471,246	+		PFR28_03894	0.72	-1.5
4,471,246	+		PFR28_03894	0.72	+1.6
4,471,247	-		PFR28_03894	0.72	-0.1
4,471,247	-		PFR28_03894	0.72	+0.2
4,471,247	-		PFR28_03894	0.72	-2.6
4,471,247	-		PFR28_03894	0.72	-1.9
4,471,247	-		PFR28_03894	0.72	+0.7
4,471,282	+		PFR28_03894	0.77	-1.1
4,471,282	+		PFR28_03894	0.77	+0.1
4,471,283	-		PFR28_03894	0.77	-0.2
4,471,283	-		PFR28_03894	0.77	-1.0
4,471,283	-		PFR28_03894	0.77	-0.2
4,471,385	+				+0.2
4,471,385	+				+1.0
4,471,386	-				-0.0
4,471,386	-				-0.1
4,471,386	-				+0.7
4,471,386	-				+0.3
4,471,486	+				-0.7
4,471,486	+				-1.2
4,471,487	-				-0.1
4,471,487	-				-0.8
4,471,487	-				+0.8
4,471,506	+				+0.0
4,471,620	+				+0.7
4,471,621	-				+0.1
4,471,621	-				-3.0
4,471,621	-				+0.2
4,471,621	-				+1.0
4,471,743	+				+0.3
4,471,743	+				+1.4
4,471,744	-				+0.4
4,471,744	-				-1.7
4,471,744	-				+0.2
4,471,744	-				-1.2
4,471,786	+				-0.3
4,471,786	+				+0.1
4,471,786	+				+0.5
4,471,807	+				-1.2
4,471,808	-				+1.7
4,471,821	-				-0.3
4,471,832	+				+0.2
4,471,832	+				+0.5
4,471,833	-				-1.2
4,471,833	-				-0.5
4,471,833	-				-1.6
4,471,842	+				+1.0
4,471,843	-				+1.3
4,471,912	+				+0.0
4,471,912	+				+0.4
4,471,913	-				+0.5
4,471,913	-				-1.1
4,471,922	-				+0.1
4,471,926	+				+0.3
4,471,936	+				+0.3
4,471,936	+				-0.1
4,471,936	+				+0.7
4,471,936	+				+0.5
4,471,936	+				+0.1
4,471,937	-				-1.6
4,471,937	-				-1.5
4,471,937	-				+1.1
4,472,006	-				-0.1
4,472,044	-				+0.5
4,472,070	+				+1.3
4,472,089	+				-0.2
4,472,089	+				-0.2
4,472,089	+				-0.1
4,472,107	-				+0.5
4,472,107	-				-0.8
4,472,195	+				+0.1
4,472,195	+				-1.1
4,472,195	+				-0.5
4,472,195	+				+0.1
4,472,195	+				+0.1
4,472,195	+				-3.1
4,472,196	-				-0.6
4,472,196	-				+0.5
4,472,196	-				-0.8
4,472,196	-				-2.0
4,472,248	+				-0.2
4,472,248	+				+0.6
4,472,249	-				-0.4
4,472,290	+				+1.4
4,472,290	+				+0.7
4,472,319	+				+1.4
4,472,320	-				+0.5
4,472,320	-				-0.1
4,472,320	-				-0.0
4,472,320	-				-0.6
4,472,320	-				-2.5
4,472,337	+				+0.0
4,472,348	+		PFR28_03895	0.10	+0.9
4,472,427	+		PFR28_03895	0.13	+1.7
4,472,427	+		PFR28_03895	0.13	-1.4
4,472,578	+		PFR28_03895	0.17	+0.5
4,472,616	+		PFR28_03895	0.18	-0.9
4,472,617	-		PFR28_03895	0.18	-0.1
4,472,650	+		PFR28_03895	0.19	-1.4
4,472,650	+		PFR28_03895	0.19	+1.6
4,472,729	-		PFR28_03895	0.21	-1.5
4,472,729	-		PFR28_03895	0.21	+1.3
4,472,778	+		PFR28_03895	0.23	-0.4
4,472,779	-		PFR28_03895	0.23	+0.2
4,472,819	+		PFR28_03895	0.24	-0.1
4,472,819	+		PFR28_03895	0.24	-0.0
4,472,819	+		PFR28_03895	0.24	+0.5
4,472,820	-		PFR28_03895	0.24	+1.1
4,472,820	-		PFR28_03895	0.24	+0.9
4,472,820	-		PFR28_03895	0.24	+1.5
4,472,848	+		PFR28_03895	0.25	+0.1
4,472,903	+		PFR28_03895	0.26	-0.5
4,472,903	+		PFR28_03895	0.26	-1.4
4,472,904	-		PFR28_03895	0.26	+1.5
4,472,904	-		PFR28_03895	0.26	-2.9
4,472,904	-		PFR28_03895	0.26	+2.4
4,472,922	+		PFR28_03895	0.27	+0.5
4,472,923	-		PFR28_03895	0.27	+0.0
4,472,923	-		PFR28_03895	0.27	+0.4
4,472,954	-		PFR28_03895	0.28	-0.7
4,472,965	+		PFR28_03895	0.28	+0.8
4,472,966	-		PFR28_03895	0.28	+0.8
4,472,966	-		PFR28_03895	0.28	-0.8
4,473,015	+		PFR28_03895	0.29	+0.1
4,473,016	-		PFR28_03895	0.29	+0.6
4,473,030	+		PFR28_03895	0.30	-0.4
4,473,030	+		PFR28_03895	0.30	+0.1
4,473,030	+		PFR28_03895	0.30	-0.4
4,473,030	+		PFR28_03895	0.30	-0.3
4,473,030	+		PFR28_03895	0.30	+1.2
4,473,030	+		PFR28_03895	0.30	+0.7
4,473,030	+		PFR28_03895	0.30	+0.6
4,473,031	-		PFR28_03895	0.30	+0.2
4,473,031	-		PFR28_03895	0.30	+0.3
4,473,031	-		PFR28_03895	0.30	-0.0
4,473,031	-		PFR28_03895	0.30	-0.5
4,473,031	-		PFR28_03895	0.30	+1.1
4,473,031	-		PFR28_03895	0.30	+1.1
4,473,031	-		PFR28_03895	0.30	+0.0
4,473,031	-		PFR28_03895	0.30	-0.6
4,473,116	-		PFR28_03895	0.32	+0.3
4,473,130	+		PFR28_03895	0.33	-1.1
4,473,131	-		PFR28_03895	0.33	-0.3
4,473,133	+		PFR28_03895	0.33	+0.7
4,473,133	+		PFR28_03895	0.33	-0.4
4,473,133	+		PFR28_03895	0.33	+0.1
4,473,133	+		PFR28_03895	0.33	-0.1
4,473,134	-		PFR28_03895	0.33	-0.5
4,473,134	-		PFR28_03895	0.33	-2.8
4,473,190	+		PFR28_03895	0.34	-1.8
4,473,191	-		PFR28_03895	0.35	-0.3
4,473,231	+		PFR28_03895	0.36	+0.5
4,473,232	-		PFR28_03895	0.36	+0.2
4,473,232	-		PFR28_03895	0.36	-0.8
4,473,232	-		PFR28_03895	0.36	+0.4
4,473,232	-		PFR28_03895	0.36	-0.2
4,473,232	-		PFR28_03895	0.36	+0.5
4,473,234	+		PFR28_03895	0.36	+0.2
4,473,234	+		PFR28_03895	0.36	+0.0
4,473,234	+		PFR28_03895	0.36	-1.1
4,473,234	+		PFR28_03895	0.36	+0.3
4,473,234	+		PFR28_03895	0.36	-0.3
4,473,234	+		PFR28_03895	0.36	+0.2
4,473,234	+		PFR28_03895	0.36	-0.3
4,473,234	+		PFR28_03895	0.36	+0.2
4,473,234	+		PFR28_03895	0.36	-0.6
4,473,234	+		PFR28_03895	0.36	-0.0
4,473,234	+		PFR28_03895	0.36	-2.0
4,473,235	-		PFR28_03895	0.36	-0.0
4,473,235	-		PFR28_03895	0.36	+0.6
4,473,235	-		PFR28_03895	0.36	-0.3
4,473,235	-		PFR28_03895	0.36	-0.1
4,473,235	-		PFR28_03895	0.36	+0.6
4,473,235	-		PFR28_03895	0.36	+0.4
4,473,235	-		PFR28_03895	0.36	+0.8
4,473,235	-		PFR28_03895	0.36	+1.4
4,473,297	-		PFR28_03895	0.38	-0.2
4,473,297	-		PFR28_03895	0.38	-0.5
4,473,301	+		PFR28_03895	0.38	-2.2
4,473,301	+		PFR28_03895	0.38	+1.0
4,473,315	-		PFR28_03895	0.38	-0.7
4,473,315	-		PFR28_03895	0.38	+0.3
4,473,315	-		PFR28_03895	0.38	-0.1
4,473,400	+		PFR28_03895	0.41	-0.9
4,473,401	-		PFR28_03895	0.41	+0.8
4,473,401	-		PFR28_03895	0.41	-0.3
4,473,428	+		PFR28_03895	0.41	-0.4
4,473,428	+		PFR28_03895	0.41	-2.5
4,473,428	+		PFR28_03895	0.41	-0.0
4,473,429	-		PFR28_03895	0.41	-2.1
4,473,429	-		PFR28_03895	0.41	-0.5
4,473,429	-		PFR28_03895	0.41	-0.2
4,473,541	+		PFR28_03895	0.45	+1.7
4,473,542	-		PFR28_03895	0.45	-0.6
4,473,557	+		PFR28_03895	0.45	+2.0
4,473,557	+		PFR28_03895	0.45	+0.3
4,473,557	+		PFR28_03895	0.45	+0.1
4,473,565	+		PFR28_03895	0.45	-0.9
4,473,565	+		PFR28_03895	0.45	+1.3
4,473,566	-		PFR28_03895	0.45	+0.1
4,473,613	-		PFR28_03895	0.47	-0.2
4,473,669	+		PFR28_03895	0.48	-1.6
4,473,669	+		PFR28_03895	0.48	-0.9
4,473,669	+		PFR28_03895	0.48	+0.5
4,473,669	+		PFR28_03895	0.48	+1.7
4,473,669	+		PFR28_03895	0.48	-1.7
4,473,670	-		PFR28_03895	0.48	+0.9
4,473,714	-		PFR28_03895	0.50	+1.1
4,473,714	-		PFR28_03895	0.50	+2.6
4,473,770	+		PFR28_03895	0.51	+1.1
4,473,770	+		PFR28_03895	0.51	-0.6
4,473,770	+		PFR28_03895	0.51	-0.3
4,473,770	+		PFR28_03895	0.51	+0.3
4,473,770	+		PFR28_03895	0.51	-0.6
4,473,770	+		PFR28_03895	0.51	+0.1
4,473,770	+		PFR28_03895	0.51	-0.5
4,473,770	+		PFR28_03895	0.51	+0.7
4,473,771	-		PFR28_03895	0.51	+0.5
4,473,771	-		PFR28_03895	0.51	+0.3
4,473,771	-		PFR28_03895	0.51	-0.1
4,473,875	+		PFR28_03895	0.54	-1.4
4,473,875	+		PFR28_03895	0.54	+1.2
4,473,876	-		PFR28_03895	0.54	-0.3
4,473,876	-		PFR28_03895	0.54	+2.7
4,473,876	-		PFR28_03895	0.54	+0.1
4,473,881	+		PFR28_03895	0.54	+2.1
4,473,881	+		PFR28_03895	0.54	+0.6
4,473,881	+		PFR28_03895	0.54	-1.1
4,473,881	+		PFR28_03895	0.54	-0.8
4,473,881	+		PFR28_03895	0.54	+0.4
4,473,881	+		PFR28_03895	0.54	+1.2
4,473,881	+		PFR28_03895	0.54	+0.4
4,473,881	+		PFR28_03895	0.54	+0.9
4,473,881	+		PFR28_03895	0.54	+0.1
4,473,882	-		PFR28_03895	0.54	+0.5
4,473,882	-		PFR28_03895	0.54	+1.1
4,473,882	-		PFR28_03895	0.54	+1.0
4,473,882	-		PFR28_03895	0.54	+0.3
4,473,882	-		PFR28_03895	0.54	+0.1
4,473,882	-		PFR28_03895	0.54	-0.2
4,473,882	-		PFR28_03895	0.54	+0.4
4,473,887	+		PFR28_03895	0.55	-0.0
4,473,887	+		PFR28_03895	0.55	-1.0
4,473,887	+		PFR28_03895	0.55	+0.9
4,473,887	+		PFR28_03895	0.55	+1.1
4,473,887	+		PFR28_03895	0.55	+2.0
4,473,887	+		PFR28_03895	0.55	+0.3
4,473,887	+		PFR28_03895	0.55	-0.2
4,473,887	+		PFR28_03895	0.55	-0.0
4,473,888	-		PFR28_03895	0.55	+1.3
4,473,888	-		PFR28_03895	0.55	+0.3
4,473,888	-		PFR28_03895	0.55	+0.9
4,473,888	-		PFR28_03895	0.55	-0.6
4,473,888	-		PFR28_03895	0.55	-0.0
4,473,888	-		PFR28_03895	0.55	-0.3
4,473,888	-		PFR28_03895	0.55	+0.9
4,473,888	-		PFR28_03895	0.55	+1.3
4,473,888	-		PFR28_03895	0.55	-0.4
4,473,888	-		PFR28_03895	0.55	+1.5
4,473,888	-		PFR28_03895	0.55	-0.4
4,473,888	-		PFR28_03895	0.55	-0.4
4,473,889	+		PFR28_03895	0.55	+3.7
4,473,890	-		PFR28_03895	0.55	-0.4
4,473,890	-		PFR28_03895	0.55	+0.3
4,473,890	-		PFR28_03895	0.55	+1.5
4,473,959	-		PFR28_03895	0.57	-1.1
4,474,003	+		PFR28_03895	0.58	+1.2
4,474,004	-		PFR28_03895	0.58	-0.7
4,474,057	+		PFR28_03895	0.59	+0.9
4,474,057	+		PFR28_03895	0.59	+1.5
4,474,057	+		PFR28_03895	0.59	+0.6
4,474,058	-		PFR28_03895	0.59	-1.9
4,474,079	-		PFR28_03895	0.60	+1.7
4,474,086	+		PFR28_03895	0.60	-0.8
4,474,086	+		PFR28_03895	0.60	+0.3
4,474,087	-		PFR28_03895	0.60	-0.2
4,474,198	-		PFR28_03895	0.63	+0.8
4,474,198	-		PFR28_03895	0.63	+0.2
4,474,222	+		PFR28_03895	0.64	-0.5
4,474,222	+		PFR28_03895	0.64	-0.6
4,474,223	-		PFR28_03895	0.64	+1.2
4,474,223	-		PFR28_03895	0.64	+0.6
4,474,223	-		PFR28_03895	0.64	+0.3
4,474,232	+		PFR28_03895	0.64	+2.0
4,474,232	+		PFR28_03895	0.64	+0.1
4,474,244	+		PFR28_03895	0.65	+1.7
4,474,244	+		PFR28_03895	0.65	+0.5
4,474,244	+		PFR28_03895	0.65	-3.4
4,474,244	+		PFR28_03895	0.65	+0.2
4,474,244	+		PFR28_03895	0.65	+0.5
4,474,244	+		PFR28_03895	0.65	+2.1
4,474,244	+		PFR28_03895	0.65	+2.0
4,474,244	+		PFR28_03895	0.65	+0.5
4,474,244	+		PFR28_03895	0.65	+1.2
4,474,245	-		PFR28_03895	0.65	+0.5
4,474,245	-		PFR28_03895	0.65	+0.2
4,474,245	-		PFR28_03895	0.65	+0.6
4,474,245	-		PFR28_03895	0.65	+1.0
4,474,245	-		PFR28_03895	0.65	-1.9
4,474,245	-		PFR28_03895	0.65	-0.3
4,474,245	-		PFR28_03895	0.65	+0.9
4,474,245	-		PFR28_03895	0.65	-0.7
4,474,271	-		PFR28_03895	0.66	-0.9
4,474,311	-		PFR28_03895	0.67	-0.5
4,474,312	+		PFR28_03895	0.67	+2.1
4,474,312	+		PFR28_03895	0.67	-0.0
4,474,312	+		PFR28_03895	0.67	+0.3
4,474,313	-		PFR28_03895	0.67	+1.1
4,474,313	-		PFR28_03895	0.67	+0.2
4,474,313	-		PFR28_03895	0.67	+0.9
4,474,313	-		PFR28_03895	0.67	-1.1
4,474,313	-		PFR28_03895	0.67	-1.1
4,474,335	+		PFR28_03895	0.67	-0.5
4,474,335	+		PFR28_03895	0.67	+0.1
4,474,335	+		PFR28_03895	0.67	+1.1
4,474,336	-		PFR28_03895	0.67	-0.5
4,474,336	-		PFR28_03895	0.67	+0.9
4,474,336	-		PFR28_03895	0.67	-0.0
4,474,342	+		PFR28_03895	0.68	+0.4
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