Experiment: Bas52
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_04258 and ECD_04259 are separated by 51 nucleotides ECD_04259 and ECD_04260 are separated by 79 nucleotides ECD_04260 and ECD_04261 are separated by 160 nucleotides
ECD_04258: ECD_04258 - thymidine phosphorylase, at 4,536,604 to 4,537,926
_04258
ECD_04259: ECD_04259 - phosphopentomutase, at 4,537,978 to 4,539,201
_04259
ECD_04260: ECD_04260 - purine nucleoside phosphorylase 1; nicotinamide 1-beta-D-riboside phosphorylase, at 4,539,281 to 4,540,000
_04260
ECD_04261: ECD_04261 - hypothetical protein, at 4,540,161 to 4,540,424
_04261
Position (kb)
4537
4538
4539
4540 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 4537.042 kb on - strand, within ECD_04258 at 4537.120 kb on - strand, within ECD_04258 at 4537.234 kb on - strand, within ECD_04258 at 4537.244 kb on - strand, within ECD_04258 at 4537.244 kb on - strand, within ECD_04258 at 4537.455 kb on + strand, within ECD_04258 at 4537.455 kb on + strand, within ECD_04258 at 4537.455 kb on + strand, within ECD_04258 at 4537.456 kb on - strand, within ECD_04258 at 4537.456 kb on - strand, within ECD_04258 at 4537.524 kb on + strand, within ECD_04258 at 4537.525 kb on - strand, within ECD_04258 at 4537.549 kb on - strand, within ECD_04258 at 4537.549 kb on - strand, within ECD_04258 at 4537.592 kb on - strand, within ECD_04258 at 4537.592 kb on - strand, within ECD_04258 at 4537.592 kb on - strand, within ECD_04258 at 4537.600 kb on + strand, within ECD_04258 at 4537.600 kb on + strand, within ECD_04258 at 4537.634 kb on - strand, within ECD_04258 at 4537.634 kb on - strand, within ECD_04258 at 4537.738 kb on + strand, within ECD_04258 at 4537.739 kb on - strand, within ECD_04258 at 4537.867 kb on - strand at 4537.879 kb on - strand at 4537.931 kb on - strand at 4537.932 kb on + strand at 4537.977 kb on + strand at 4537.977 kb on + strand at 4537.977 kb on + strand at 4537.977 kb on + strand at 4537.977 kb on + strand at 4537.977 kb on + strand at 4537.977 kb on + strand at 4537.977 kb on + strand at 4537.978 kb on - strand at 4537.992 kb on + strand at 4537.992 kb on + strand at 4537.992 kb on + strand at 4537.992 kb on + strand at 4538.268 kb on + strand, within ECD_04259 at 4538.484 kb on + strand, within ECD_04259 at 4538.593 kb on + strand, within ECD_04259 at 4538.767 kb on + strand, within ECD_04259 at 4538.859 kb on + strand, within ECD_04259 at 4538.860 kb on - strand, within ECD_04259 at 4538.929 kb on + strand, within ECD_04259 at 4539.046 kb on - strand, within ECD_04259 at 4539.298 kb on + strand at 4539.327 kb on + strand at 4539.362 kb on + strand, within ECD_04260 at 4539.363 kb on - strand, within ECD_04260 at 4539.363 kb on - strand, within ECD_04260 at 4539.363 kb on - strand, within ECD_04260 at 4539.364 kb on + strand, within ECD_04260 at 4539.437 kb on + strand, within ECD_04260 at 4539.438 kb on - strand, within ECD_04260 at 4539.438 kb on - strand, within ECD_04260 at 4539.577 kb on - strand, within ECD_04260 at 4539.635 kb on - strand, within ECD_04260 at 4539.761 kb on + strand, within ECD_04260 at 4539.762 kb on - strand, within ECD_04260 at 4539.835 kb on + strand, within ECD_04260 at 4539.836 kb on - strand, within ECD_04260 at 4539.998 kb on + strand at 4539.998 kb on + strand at 4539.999 kb on - strand at 4539.999 kb on - strand at 4540.070 kb on - strand at 4540.142 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas52 remove 4,537,042 - ECD_04258 0.33 +0.4 4,537,120 - ECD_04258 0.39 +0.2 4,537,234 - ECD_04258 0.48 +0.4 4,537,244 - ECD_04258 0.48 -0.4 4,537,244 - ECD_04258 0.48 +1.6 4,537,455 + ECD_04258 0.64 +0.2 4,537,455 + ECD_04258 0.64 +1.4 4,537,455 + ECD_04258 0.64 +1.0 4,537,456 - ECD_04258 0.64 -1.5 4,537,456 - ECD_04258 0.64 +1.3 4,537,524 + ECD_04258 0.70 -0.1 4,537,525 - ECD_04258 0.70 +0.5 4,537,549 - ECD_04258 0.71 -0.1 4,537,549 - ECD_04258 0.71 -0.1 4,537,592 - ECD_04258 0.75 -0.7 4,537,592 - ECD_04258 0.75 -0.4 4,537,592 - ECD_04258 0.75 -0.5 4,537,600 + ECD_04258 0.75 +0.3 4,537,600 + ECD_04258 0.75 +0.1 4,537,634 - ECD_04258 0.78 -1.4 4,537,634 - ECD_04258 0.78 +0.0 4,537,738 + ECD_04258 0.86 -0.5 4,537,739 - ECD_04258 0.86 +1.1 4,537,867 - -0.2 4,537,879 - -0.2 4,537,931 - -1.1 4,537,932 + +0.0 4,537,977 + +0.6 4,537,977 + -1.5 4,537,977 + -2.3 4,537,977 + -0.6 4,537,977 + -1.9 4,537,977 + -0.9 4,537,977 + +1.4 4,537,977 + -1.0 4,537,978 - -0.9 4,537,992 + -2.8 4,537,992 + -2.5 4,537,992 + -2.7 4,537,992 + -2.0 4,538,268 + ECD_04259 0.24 +0.1 4,538,484 + ECD_04259 0.41 -3.1 4,538,593 + ECD_04259 0.50 -1.5 4,538,767 + ECD_04259 0.64 -0.9 4,538,859 + ECD_04259 0.72 -2.7 4,538,860 - ECD_04259 0.72 -1.4 4,538,929 + ECD_04259 0.78 -1.3 4,539,046 - ECD_04259 0.87 -1.4 4,539,298 + +1.6 4,539,327 + -2.0 4,539,362 + ECD_04260 0.11 -1.2 4,539,363 - ECD_04260 0.11 -1.8 4,539,363 - ECD_04260 0.11 -3.2 4,539,363 - ECD_04260 0.11 -2.2 4,539,364 + ECD_04260 0.12 -2.4 4,539,437 + ECD_04260 0.22 -0.9 4,539,438 - ECD_04260 0.22 -2.7 4,539,438 - ECD_04260 0.22 -1.7 4,539,577 - ECD_04260 0.41 -1.9 4,539,635 - ECD_04260 0.49 -1.7 4,539,761 + ECD_04260 0.67 -1.9 4,539,762 - ECD_04260 0.67 -1.7 4,539,835 + ECD_04260 0.77 -1.3 4,539,836 - ECD_04260 0.77 -2.8 4,539,998 + -0.4 4,539,998 + -1.0 4,539,999 - -0.0 4,539,999 - -0.7 4,540,070 - +0.6 4,540,142 + +0.1
Or see this region's nucleotide sequence