Strain Fitness in Escherichia coli BL21 around ECD_04259

Experiment: Bas52

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_04258 and ECD_04259 are separated by 51 nucleotidesECD_04259 and ECD_04260 are separated by 79 nucleotidesECD_04260 and ECD_04261 are separated by 160 nucleotides ECD_04258: ECD_04258 - thymidine phosphorylase, at 4,536,604 to 4,537,926 _04258 ECD_04259: ECD_04259 - phosphopentomutase, at 4,537,978 to 4,539,201 _04259 ECD_04260: ECD_04260 - purine nucleoside phosphorylase 1; nicotinamide 1-beta-D-riboside phosphorylase, at 4,539,281 to 4,540,000 _04260 ECD_04261: ECD_04261 - hypothetical protein, at 4,540,161 to 4,540,424 _04261 Position (kb) 4537 4538 4539 4540Strain fitness (log2 ratio) -3 -2 -1 0 1at 4537.042 kb on - strand, within ECD_04258at 4537.120 kb on - strand, within ECD_04258at 4537.234 kb on - strand, within ECD_04258at 4537.244 kb on - strand, within ECD_04258at 4537.244 kb on - strand, within ECD_04258at 4537.455 kb on + strand, within ECD_04258at 4537.455 kb on + strand, within ECD_04258at 4537.455 kb on + strand, within ECD_04258at 4537.456 kb on - strand, within ECD_04258at 4537.456 kb on - strand, within ECD_04258at 4537.524 kb on + strand, within ECD_04258at 4537.525 kb on - strand, within ECD_04258at 4537.549 kb on - strand, within ECD_04258at 4537.549 kb on - strand, within ECD_04258at 4537.592 kb on - strand, within ECD_04258at 4537.592 kb on - strand, within ECD_04258at 4537.592 kb on - strand, within ECD_04258at 4537.600 kb on + strand, within ECD_04258at 4537.600 kb on + strand, within ECD_04258at 4537.634 kb on - strand, within ECD_04258at 4537.634 kb on - strand, within ECD_04258at 4537.738 kb on + strand, within ECD_04258at 4537.739 kb on - strand, within ECD_04258at 4537.867 kb on - strandat 4537.879 kb on - strandat 4537.931 kb on - strandat 4537.932 kb on + strandat 4537.977 kb on + strandat 4537.977 kb on + strandat 4537.977 kb on + strandat 4537.977 kb on + strandat 4537.977 kb on + strandat 4537.977 kb on + strandat 4537.977 kb on + strandat 4537.977 kb on + strandat 4537.978 kb on - strandat 4537.992 kb on + strandat 4537.992 kb on + strandat 4537.992 kb on + strandat 4537.992 kb on + strandat 4538.268 kb on + strand, within ECD_04259at 4538.484 kb on + strand, within ECD_04259at 4538.593 kb on + strand, within ECD_04259at 4538.767 kb on + strand, within ECD_04259at 4538.859 kb on + strand, within ECD_04259at 4538.860 kb on - strand, within ECD_04259at 4538.929 kb on + strand, within ECD_04259at 4539.046 kb on - strand, within ECD_04259at 4539.298 kb on + strandat 4539.327 kb on + strandat 4539.362 kb on + strand, within ECD_04260at 4539.363 kb on - strand, within ECD_04260at 4539.363 kb on - strand, within ECD_04260at 4539.363 kb on - strand, within ECD_04260at 4539.364 kb on + strand, within ECD_04260at 4539.437 kb on + strand, within ECD_04260at 4539.438 kb on - strand, within ECD_04260at 4539.438 kb on - strand, within ECD_04260at 4539.577 kb on - strand, within ECD_04260at 4539.635 kb on - strand, within ECD_04260at 4539.761 kb on + strand, within ECD_04260at 4539.762 kb on - strand, within ECD_04260at 4539.835 kb on + strand, within ECD_04260at 4539.836 kb on - strand, within ECD_04260at 4539.998 kb on + strandat 4539.998 kb on + strandat 4539.999 kb on - strandat 4539.999 kb on - strandat 4540.070 kb on - strandat 4540.142 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas52
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4,537,042 - ECD_04258 0.33 +0.4
4,537,120 - ECD_04258 0.39 +0.2
4,537,234 - ECD_04258 0.48 +0.4
4,537,244 - ECD_04258 0.48 -0.4
4,537,244 - ECD_04258 0.48 +1.6
4,537,455 + ECD_04258 0.64 +0.2
4,537,455 + ECD_04258 0.64 +1.4
4,537,455 + ECD_04258 0.64 +1.0
4,537,456 - ECD_04258 0.64 -1.5
4,537,456 - ECD_04258 0.64 +1.3
4,537,524 + ECD_04258 0.70 -0.1
4,537,525 - ECD_04258 0.70 +0.5
4,537,549 - ECD_04258 0.71 -0.1
4,537,549 - ECD_04258 0.71 -0.1
4,537,592 - ECD_04258 0.75 -0.7
4,537,592 - ECD_04258 0.75 -0.4
4,537,592 - ECD_04258 0.75 -0.5
4,537,600 + ECD_04258 0.75 +0.3
4,537,600 + ECD_04258 0.75 +0.1
4,537,634 - ECD_04258 0.78 -1.4
4,537,634 - ECD_04258 0.78 +0.0
4,537,738 + ECD_04258 0.86 -0.5
4,537,739 - ECD_04258 0.86 +1.1
4,537,867 - -0.2
4,537,879 - -0.2
4,537,931 - -1.1
4,537,932 + +0.0
4,537,977 + +0.6
4,537,977 + -1.5
4,537,977 + -2.3
4,537,977 + -0.6
4,537,977 + -1.9
4,537,977 + -0.9
4,537,977 + +1.4
4,537,977 + -1.0
4,537,978 - -0.9
4,537,992 + -2.8
4,537,992 + -2.5
4,537,992 + -2.7
4,537,992 + -2.0
4,538,268 + ECD_04259 0.24 +0.1
4,538,484 + ECD_04259 0.41 -3.1
4,538,593 + ECD_04259 0.50 -1.5
4,538,767 + ECD_04259 0.64 -0.9
4,538,859 + ECD_04259 0.72 -2.7
4,538,860 - ECD_04259 0.72 -1.4
4,538,929 + ECD_04259 0.78 -1.3
4,539,046 - ECD_04259 0.87 -1.4
4,539,298 + +1.6
4,539,327 + -2.0
4,539,362 + ECD_04260 0.11 -1.2
4,539,363 - ECD_04260 0.11 -1.8
4,539,363 - ECD_04260 0.11 -3.2
4,539,363 - ECD_04260 0.11 -2.2
4,539,364 + ECD_04260 0.12 -2.4
4,539,437 + ECD_04260 0.22 -0.9
4,539,438 - ECD_04260 0.22 -2.7
4,539,438 - ECD_04260 0.22 -1.7
4,539,577 - ECD_04260 0.41 -1.9
4,539,635 - ECD_04260 0.49 -1.7
4,539,761 + ECD_04260 0.67 -1.9
4,539,762 - ECD_04260 0.67 -1.7
4,539,835 + ECD_04260 0.77 -1.3
4,539,836 - ECD_04260 0.77 -2.8
4,539,998 + -0.4
4,539,998 + -1.0
4,539,999 - -0.0
4,539,999 - -0.7
4,540,070 - +0.6
4,540,142 + +0.1

Or see this region's nucleotide sequence