Strain Fitness in Escherichia coli BL21 around ECD_04139

Experiment: Bas52

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_04139 and ECD_04391 are separated by 342 nucleotidesECD_04391 and ECD_04140 are separated by 27 nucleotides ECD_04139: ECD_04139 - uncharacterized protein, at 4,411,517 to 4,411,846 _04139 ECD_04391: ECD_04391 - hypothetical protein, at 4,412,189 to 4,412,332 _04391 ECD_04140: ECD_04140 - IS4 transposase, at 4,412,360 to 4,413,688 _04140 Position (kb) 4411 4412Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 4410.608 kb on - strandat 4410.608 kb on - strandat 4410.638 kb on + strandat 4410.656 kb on + strandat 4410.656 kb on + strandat 4410.658 kb on + strandat 4410.722 kb on - strandat 4410.722 kb on - strandat 4410.722 kb on - strandat 4410.722 kb on - strandat 4410.722 kb on - strandat 4410.731 kb on + strandat 4410.731 kb on + strandat 4410.731 kb on + strandat 4410.731 kb on + strandat 4410.732 kb on - strandat 4410.732 kb on - strandat 4410.732 kb on - strandat 4410.732 kb on - strandat 4410.732 kb on - strandat 4410.732 kb on - strandat 4410.732 kb on - strandat 4410.732 kb on - strandat 4410.733 kb on + strandat 4410.734 kb on - strandat 4410.734 kb on - strandat 4410.734 kb on - strandat 4410.765 kb on - strandat 4410.773 kb on + strandat 4410.778 kb on + strandat 4410.779 kb on - strandat 4410.780 kb on + strandat 4410.780 kb on + strandat 4410.854 kb on + strandat 4410.912 kb on - strandat 4410.921 kb on - strandat 4410.923 kb on + strandat 4410.923 kb on + strandat 4410.923 kb on + strandat 4410.924 kb on - strandat 4410.924 kb on - strandat 4410.925 kb on - strandat 4410.949 kb on + strandat 4411.142 kb on - strandat 4411.199 kb on - strandat 4411.199 kb on - strandat 4411.201 kb on + strandat 4411.201 kb on + strandat 4411.202 kb on - strandat 4411.202 kb on - strandat 4411.202 kb on - strandat 4411.202 kb on - strandat 4411.202 kb on - strandat 4411.202 kb on - strandat 4411.222 kb on - strandat 4411.315 kb on - strandat 4411.315 kb on - strandat 4411.622 kb on + strand, within ECD_04139at 4411.622 kb on + strand, within ECD_04139at 4411.623 kb on - strand, within ECD_04139at 4411.623 kb on - strand, within ECD_04139at 4411.638 kb on - strand, within ECD_04139at 4411.813 kb on - strand, within ECD_04139at 4411.813 kb on - strand, within ECD_04139at 4411.851 kb on + strandat 4411.927 kb on + strandat 4411.927 kb on + strandat 4411.928 kb on - strandat 4411.965 kb on - strandat 4412.026 kb on + strandat 4412.027 kb on - strandat 4412.027 kb on - strandat 4412.082 kb on - strandat 4412.083 kb on + strandat 4412.083 kb on + strandat 4412.083 kb on + strandat 4412.083 kb on + strandat 4412.083 kb on + strandat 4412.083 kb on + strandat 4412.083 kb on + strandat 4412.084 kb on - strandat 4412.084 kb on - strandat 4412.138 kb on - strandat 4412.154 kb on - strandat 4412.154 kb on - strandat 4412.161 kb on + strandat 4412.161 kb on + strandat 4412.187 kb on + strandat 4412.188 kb on - strandat 4412.188 kb on - strandat 4412.307 kb on + strand, within ECD_04391at 4412.307 kb on + strand, within ECD_04391at 4412.331 kb on - strandat 4412.348 kb on - strandat 4412.474 kb on - strandat 4412.503 kb on + strand, within ECD_04140at 4412.504 kb on - strand, within ECD_04140at 4412.641 kb on - strand, within ECD_04140at 4412.730 kb on - strand, within ECD_04140at 4412.769 kb on + strand, within ECD_04140

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas52
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4,410,608 - -0.3
4,410,608 - +1.0
4,410,638 + -0.0
4,410,656 + -0.7
4,410,656 + -0.1
4,410,658 + +0.6
4,410,722 - -1.2
4,410,722 - +0.5
4,410,722 - +1.1
4,410,722 - +0.2
4,410,722 - -0.1
4,410,731 + -0.9
4,410,731 + +1.9
4,410,731 + +0.5
4,410,731 + -0.0
4,410,732 - -0.3
4,410,732 - +0.2
4,410,732 - +0.6
4,410,732 - +4.2
4,410,732 - -0.4
4,410,732 - +0.6
4,410,732 - +0.4
4,410,732 - +0.1
4,410,733 + -0.3
4,410,734 - -0.4
4,410,734 - +0.9
4,410,734 - +0.4
4,410,765 - +0.2
4,410,773 + +0.1
4,410,778 + +0.5
4,410,779 - +0.1
4,410,780 + +0.8
4,410,780 + -1.4
4,410,854 + -0.2
4,410,912 - -0.4
4,410,921 - +1.1
4,410,923 + -0.7
4,410,923 + +0.2
4,410,923 + +0.5
4,410,924 - -0.1
4,410,924 - +0.4
4,410,925 - -0.4
4,410,949 + -0.4
4,411,142 - -0.3
4,411,199 - +4.2
4,411,199 - +0.3
4,411,201 + +1.6
4,411,201 + +0.5
4,411,202 - +1.5
4,411,202 - +0.3
4,411,202 - +1.0
4,411,202 - -0.9
4,411,202 - +0.2
4,411,202 - -0.4
4,411,222 - -0.3
4,411,315 - +0.5
4,411,315 - -1.1
4,411,622 + ECD_04139 0.32 +0.6
4,411,622 + ECD_04139 0.32 -1.1
4,411,623 - ECD_04139 0.32 -0.0
4,411,623 - ECD_04139 0.32 -0.2
4,411,638 - ECD_04139 0.37 -0.0
4,411,813 - ECD_04139 0.90 -0.4
4,411,813 - ECD_04139 0.90 +0.0
4,411,851 + -0.4
4,411,927 + +1.2
4,411,927 + -1.4
4,411,928 - -0.2
4,411,965 - +0.2
4,412,026 + -0.8
4,412,027 - -0.4
4,412,027 - -0.1
4,412,082 - -0.2
4,412,083 + -0.4
4,412,083 + -0.1
4,412,083 + -3.1
4,412,083 + +0.2
4,412,083 + +0.3
4,412,083 + +0.6
4,412,083 + +1.0
4,412,084 - -0.5
4,412,084 - -1.1
4,412,138 - +0.6
4,412,154 - +0.5
4,412,154 - -0.8
4,412,161 + +0.5
4,412,161 + -0.7
4,412,187 + +0.4
4,412,188 - +0.2
4,412,188 - -0.7
4,412,307 + ECD_04391 0.82 -0.4
4,412,307 + ECD_04391 0.82 -0.2
4,412,331 - +0.1
4,412,348 - -0.9
4,412,474 - -0.6
4,412,503 + ECD_04140 0.11 -0.6
4,412,504 - ECD_04140 0.11 +1.6
4,412,641 - ECD_04140 0.21 +0.6
4,412,730 - ECD_04140 0.28 -0.1
4,412,769 + ECD_04140 0.31 -1.9

Or see this region's nucleotide sequence