Experiment: Bas52
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_04130 and ECD_04131 are separated by 66 nucleotides ECD_04131 and ECD_04132 are separated by 62 nucleotides ECD_04132 and ECD_04133 are separated by 23 nucleotides
ECD_04130: ECD_04130 - transcriptional repressor, 5-gluconate-binding, at 4,401,733 to 4,402,731
_04130
ECD_04131: ECD_04131 - L-idonate and D-gluconate transporter, at 4,402,798 to 4,404,117
_04131
ECD_04132: ECD_04132 - 5-keto-D-gluconate-5-reductase, at 4,404,180 to 4,404,944
_04132
ECD_04133: ECD_04133 - L-idonate 5-dehydrogenase, NAD-binding, at 4,404,968 to 4,405,999
_04133
Position (kb)
4402
4403
4404
4405 Strain fitness (log2 ratio)
-1
0
1
2
3 at 4402.000 kb on + strand, within ECD_04130 at 4402.010 kb on - strand, within ECD_04130 at 4402.042 kb on + strand, within ECD_04130 at 4402.090 kb on + strand, within ECD_04130 at 4402.212 kb on + strand, within ECD_04130 at 4402.213 kb on - strand, within ECD_04130 at 4402.213 kb on - strand, within ECD_04130 at 4402.280 kb on - strand, within ECD_04130 at 4402.280 kb on - strand, within ECD_04130 at 4402.361 kb on - strand, within ECD_04130 at 4402.378 kb on - strand, within ECD_04130 at 4402.379 kb on + strand, within ECD_04130 at 4402.425 kb on - strand, within ECD_04130 at 4402.455 kb on + strand, within ECD_04130 at 4402.456 kb on - strand, within ECD_04130 at 4402.539 kb on + strand, within ECD_04130 at 4402.539 kb on + strand, within ECD_04130 at 4402.657 kb on - strand at 4402.776 kb on + strand at 4402.787 kb on - strand at 4402.915 kb on - strand at 4402.940 kb on - strand, within ECD_04131 at 4402.984 kb on + strand, within ECD_04131 at 4402.985 kb on - strand, within ECD_04131 at 4403.121 kb on + strand, within ECD_04131 at 4403.122 kb on - strand, within ECD_04131 at 4403.134 kb on + strand, within ECD_04131 at 4403.135 kb on - strand, within ECD_04131 at 4403.146 kb on - strand, within ECD_04131 at 4403.146 kb on - strand, within ECD_04131 at 4403.146 kb on - strand, within ECD_04131 at 4403.147 kb on + strand, within ECD_04131 at 4403.167 kb on + strand, within ECD_04131 at 4403.167 kb on + strand, within ECD_04131 at 4403.168 kb on - strand, within ECD_04131 at 4403.168 kb on - strand, within ECD_04131 at 4403.168 kb on - strand, within ECD_04131 at 4403.168 kb on - strand, within ECD_04131 at 4403.170 kb on + strand, within ECD_04131 at 4403.171 kb on - strand, within ECD_04131 at 4403.171 kb on - strand, within ECD_04131 at 4403.173 kb on + strand, within ECD_04131 at 4403.205 kb on + strand, within ECD_04131 at 4403.206 kb on - strand, within ECD_04131 at 4403.232 kb on + strand, within ECD_04131 at 4403.233 kb on - strand, within ECD_04131 at 4403.233 kb on - strand, within ECD_04131 at 4403.247 kb on + strand, within ECD_04131 at 4403.278 kb on - strand, within ECD_04131 at 4403.305 kb on - strand, within ECD_04131 at 4403.305 kb on - strand, within ECD_04131 at 4403.316 kb on + strand, within ECD_04131 at 4403.317 kb on - strand, within ECD_04131 at 4403.370 kb on + strand, within ECD_04131 at 4403.475 kb on + strand, within ECD_04131 at 4403.483 kb on - strand, within ECD_04131 at 4403.494 kb on + strand, within ECD_04131 at 4403.494 kb on + strand, within ECD_04131 at 4403.559 kb on + strand, within ECD_04131 at 4403.560 kb on - strand, within ECD_04131 at 4403.560 kb on - strand, within ECD_04131 at 4403.581 kb on - strand, within ECD_04131 at 4403.588 kb on + strand, within ECD_04131 at 4403.705 kb on + strand, within ECD_04131 at 4403.706 kb on - strand, within ECD_04131 at 4403.706 kb on - strand, within ECD_04131 at 4403.731 kb on + strand, within ECD_04131 at 4403.732 kb on - strand, within ECD_04131 at 4403.732 kb on - strand, within ECD_04131 at 4403.732 kb on - strand, within ECD_04131 at 4403.740 kb on - strand, within ECD_04131 at 4403.743 kb on + strand, within ECD_04131 at 4403.743 kb on + strand, within ECD_04131 at 4403.743 kb on + strand, within ECD_04131 at 4403.744 kb on - strand, within ECD_04131 at 4403.868 kb on + strand, within ECD_04131 at 4403.970 kb on + strand, within ECD_04131 at 4403.971 kb on - strand, within ECD_04131 at 4404.076 kb on - strand at 4404.118 kb on - strand at 4404.193 kb on - strand at 4404.357 kb on - strand, within ECD_04132 at 4404.404 kb on + strand, within ECD_04132 at 4404.518 kb on + strand, within ECD_04132 at 4404.519 kb on - strand, within ECD_04132 at 4404.521 kb on + strand, within ECD_04132 at 4404.669 kb on - strand, within ECD_04132 at 4404.708 kb on - strand, within ECD_04132 at 4404.749 kb on + strand, within ECD_04132 at 4404.851 kb on - strand, within ECD_04132 at 4404.948 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas52 remove 4,402,000 + ECD_04130 0.27 -1.0 4,402,010 - ECD_04130 0.28 +0.6 4,402,042 + ECD_04130 0.31 -0.4 4,402,090 + ECD_04130 0.36 -0.6 4,402,212 + ECD_04130 0.48 -1.2 4,402,213 - ECD_04130 0.48 +0.2 4,402,213 - ECD_04130 0.48 +0.8 4,402,280 - ECD_04130 0.55 +0.6 4,402,280 - ECD_04130 0.55 +0.7 4,402,361 - ECD_04130 0.63 -0.3 4,402,378 - ECD_04130 0.65 +0.9 4,402,379 + ECD_04130 0.65 +0.7 4,402,425 - ECD_04130 0.69 -1.1 4,402,455 + ECD_04130 0.72 -1.7 4,402,456 - ECD_04130 0.72 +0.5 4,402,539 + ECD_04130 0.81 +0.1 4,402,539 + ECD_04130 0.81 -0.5 4,402,657 - +0.6 4,402,776 + +1.1 4,402,787 - +0.9 4,402,915 - -1.0 4,402,940 - ECD_04131 0.11 -0.9 4,402,984 + ECD_04131 0.14 -0.2 4,402,985 - ECD_04131 0.14 +0.7 4,403,121 + ECD_04131 0.24 +0.5 4,403,122 - ECD_04131 0.25 +1.3 4,403,134 + ECD_04131 0.25 +0.6 4,403,135 - ECD_04131 0.26 -0.1 4,403,146 - ECD_04131 0.26 +2.6 4,403,146 - ECD_04131 0.26 +0.5 4,403,146 - ECD_04131 0.26 +0.9 4,403,147 + ECD_04131 0.26 +0.5 4,403,167 + ECD_04131 0.28 +0.4 4,403,167 + ECD_04131 0.28 +0.3 4,403,168 - ECD_04131 0.28 +3.6 4,403,168 - ECD_04131 0.28 +0.6 4,403,168 - ECD_04131 0.28 +0.5 4,403,168 - ECD_04131 0.28 +0.3 4,403,170 + ECD_04131 0.28 +0.5 4,403,171 - ECD_04131 0.28 -0.5 4,403,171 - ECD_04131 0.28 +0.7 4,403,173 + ECD_04131 0.28 +1.6 4,403,205 + ECD_04131 0.31 +1.0 4,403,206 - ECD_04131 0.31 -0.5 4,403,232 + ECD_04131 0.33 +0.1 4,403,233 - ECD_04131 0.33 -0.2 4,403,233 - ECD_04131 0.33 -0.0 4,403,247 + ECD_04131 0.34 +0.2 4,403,278 - ECD_04131 0.36 -1.1 4,403,305 - ECD_04131 0.38 +0.3 4,403,305 - ECD_04131 0.38 +0.5 4,403,316 + ECD_04131 0.39 +0.1 4,403,317 - ECD_04131 0.39 +1.1 4,403,370 + ECD_04131 0.43 -0.5 4,403,475 + ECD_04131 0.51 +1.4 4,403,483 - ECD_04131 0.52 +1.2 4,403,494 + ECD_04131 0.53 +0.6 4,403,494 + ECD_04131 0.53 +0.1 4,403,559 + ECD_04131 0.58 +0.8 4,403,560 - ECD_04131 0.58 +0.4 4,403,560 - ECD_04131 0.58 +0.3 4,403,581 - ECD_04131 0.59 +0.6 4,403,588 + ECD_04131 0.60 +0.4 4,403,705 + ECD_04131 0.69 +1.3 4,403,706 - ECD_04131 0.69 +1.2 4,403,706 - ECD_04131 0.69 +0.3 4,403,731 + ECD_04131 0.71 -1.0 4,403,732 - ECD_04131 0.71 +0.0 4,403,732 - ECD_04131 0.71 +1.0 4,403,732 - ECD_04131 0.71 +0.1 4,403,740 - ECD_04131 0.71 -0.1 4,403,743 + ECD_04131 0.72 +1.1 4,403,743 + ECD_04131 0.72 +2.0 4,403,743 + ECD_04131 0.72 -0.0 4,403,744 - ECD_04131 0.72 +0.1 4,403,868 + ECD_04131 0.81 -1.0 4,403,970 + ECD_04131 0.89 +0.6 4,403,971 - ECD_04131 0.89 -0.2 4,404,076 - +0.9 4,404,118 - +0.4 4,404,193 - +1.2 4,404,357 - ECD_04132 0.23 -1.5 4,404,404 + ECD_04132 0.29 -0.7 4,404,518 + ECD_04132 0.44 +0.3 4,404,519 - ECD_04132 0.44 +0.7 4,404,521 + ECD_04132 0.45 +0.9 4,404,669 - ECD_04132 0.64 +1.3 4,404,708 - ECD_04132 0.69 +1.0 4,404,749 + ECD_04132 0.74 +0.4 4,404,851 - ECD_04132 0.88 +2.1 4,404,948 - +1.5
Or see this region's nucleotide sequence