Strain Fitness in Escherichia coli BL21 around ECD_04131

Experiment: Bas52

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntECD_04130 and ECD_04131 are separated by 66 nucleotidesECD_04131 and ECD_04132 are separated by 62 nucleotidesECD_04132 and ECD_04133 are separated by 23 nucleotides ECD_04130: ECD_04130 - transcriptional repressor, 5-gluconate-binding, at 4,401,733 to 4,402,731 _04130 ECD_04131: ECD_04131 - L-idonate and D-gluconate transporter, at 4,402,798 to 4,404,117 _04131 ECD_04132: ECD_04132 - 5-keto-D-gluconate-5-reductase, at 4,404,180 to 4,404,944 _04132 ECD_04133: ECD_04133 - L-idonate 5-dehydrogenase, NAD-binding, at 4,404,968 to 4,405,999 _04133 Position (kb) 4402 4403 4404 4405Strain fitness (log2 ratio) -1 0 1 2 3at 4402.000 kb on + strand, within ECD_04130at 4402.010 kb on - strand, within ECD_04130at 4402.042 kb on + strand, within ECD_04130at 4402.090 kb on + strand, within ECD_04130at 4402.212 kb on + strand, within ECD_04130at 4402.213 kb on - strand, within ECD_04130at 4402.213 kb on - strand, within ECD_04130at 4402.280 kb on - strand, within ECD_04130at 4402.280 kb on - strand, within ECD_04130at 4402.361 kb on - strand, within ECD_04130at 4402.378 kb on - strand, within ECD_04130at 4402.379 kb on + strand, within ECD_04130at 4402.425 kb on - strand, within ECD_04130at 4402.455 kb on + strand, within ECD_04130at 4402.456 kb on - strand, within ECD_04130at 4402.539 kb on + strand, within ECD_04130at 4402.539 kb on + strand, within ECD_04130at 4402.657 kb on - strandat 4402.776 kb on + strandat 4402.787 kb on - strandat 4402.915 kb on - strandat 4402.940 kb on - strand, within ECD_04131at 4402.984 kb on + strand, within ECD_04131at 4402.985 kb on - strand, within ECD_04131at 4403.121 kb on + strand, within ECD_04131at 4403.122 kb on - strand, within ECD_04131at 4403.134 kb on + strand, within ECD_04131at 4403.135 kb on - strand, within ECD_04131at 4403.146 kb on - strand, within ECD_04131at 4403.146 kb on - strand, within ECD_04131at 4403.146 kb on - strand, within ECD_04131at 4403.147 kb on + strand, within ECD_04131at 4403.167 kb on + strand, within ECD_04131at 4403.167 kb on + strand, within ECD_04131at 4403.168 kb on - strand, within ECD_04131at 4403.168 kb on - strand, within ECD_04131at 4403.168 kb on - strand, within ECD_04131at 4403.168 kb on - strand, within ECD_04131at 4403.170 kb on + strand, within ECD_04131at 4403.171 kb on - strand, within ECD_04131at 4403.171 kb on - strand, within ECD_04131at 4403.173 kb on + strand, within ECD_04131at 4403.205 kb on + strand, within ECD_04131at 4403.206 kb on - strand, within ECD_04131at 4403.232 kb on + strand, within ECD_04131at 4403.233 kb on - strand, within ECD_04131at 4403.233 kb on - strand, within ECD_04131at 4403.247 kb on + strand, within ECD_04131at 4403.278 kb on - strand, within ECD_04131at 4403.305 kb on - strand, within ECD_04131at 4403.305 kb on - strand, within ECD_04131at 4403.316 kb on + strand, within ECD_04131at 4403.317 kb on - strand, within ECD_04131at 4403.370 kb on + strand, within ECD_04131at 4403.475 kb on + strand, within ECD_04131at 4403.483 kb on - strand, within ECD_04131at 4403.494 kb on + strand, within ECD_04131at 4403.494 kb on + strand, within ECD_04131at 4403.559 kb on + strand, within ECD_04131at 4403.560 kb on - strand, within ECD_04131at 4403.560 kb on - strand, within ECD_04131at 4403.581 kb on - strand, within ECD_04131at 4403.588 kb on + strand, within ECD_04131at 4403.705 kb on + strand, within ECD_04131at 4403.706 kb on - strand, within ECD_04131at 4403.706 kb on - strand, within ECD_04131at 4403.731 kb on + strand, within ECD_04131at 4403.732 kb on - strand, within ECD_04131at 4403.732 kb on - strand, within ECD_04131at 4403.732 kb on - strand, within ECD_04131at 4403.740 kb on - strand, within ECD_04131at 4403.743 kb on + strand, within ECD_04131at 4403.743 kb on + strand, within ECD_04131at 4403.743 kb on + strand, within ECD_04131at 4403.744 kb on - strand, within ECD_04131at 4403.868 kb on + strand, within ECD_04131at 4403.970 kb on + strand, within ECD_04131at 4403.971 kb on - strand, within ECD_04131at 4404.076 kb on - strandat 4404.118 kb on - strandat 4404.193 kb on - strandat 4404.357 kb on - strand, within ECD_04132at 4404.404 kb on + strand, within ECD_04132at 4404.518 kb on + strand, within ECD_04132at 4404.519 kb on - strand, within ECD_04132at 4404.521 kb on + strand, within ECD_04132at 4404.669 kb on - strand, within ECD_04132at 4404.708 kb on - strand, within ECD_04132at 4404.749 kb on + strand, within ECD_04132at 4404.851 kb on - strand, within ECD_04132at 4404.948 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Bas52
remove
4,402,000 + ECD_04130 0.27 -1.0
4,402,010 - ECD_04130 0.28 +0.6
4,402,042 + ECD_04130 0.31 -0.4
4,402,090 + ECD_04130 0.36 -0.6
4,402,212 + ECD_04130 0.48 -1.2
4,402,213 - ECD_04130 0.48 +0.2
4,402,213 - ECD_04130 0.48 +0.8
4,402,280 - ECD_04130 0.55 +0.6
4,402,280 - ECD_04130 0.55 +0.7
4,402,361 - ECD_04130 0.63 -0.3
4,402,378 - ECD_04130 0.65 +0.9
4,402,379 + ECD_04130 0.65 +0.7
4,402,425 - ECD_04130 0.69 -1.1
4,402,455 + ECD_04130 0.72 -1.7
4,402,456 - ECD_04130 0.72 +0.5
4,402,539 + ECD_04130 0.81 +0.1
4,402,539 + ECD_04130 0.81 -0.5
4,402,657 - +0.6
4,402,776 + +1.1
4,402,787 - +0.9
4,402,915 - -1.0
4,402,940 - ECD_04131 0.11 -0.9
4,402,984 + ECD_04131 0.14 -0.2
4,402,985 - ECD_04131 0.14 +0.7
4,403,121 + ECD_04131 0.24 +0.5
4,403,122 - ECD_04131 0.25 +1.3
4,403,134 + ECD_04131 0.25 +0.6
4,403,135 - ECD_04131 0.26 -0.1
4,403,146 - ECD_04131 0.26 +2.6
4,403,146 - ECD_04131 0.26 +0.5
4,403,146 - ECD_04131 0.26 +0.9
4,403,147 + ECD_04131 0.26 +0.5
4,403,167 + ECD_04131 0.28 +0.4
4,403,167 + ECD_04131 0.28 +0.3
4,403,168 - ECD_04131 0.28 +3.6
4,403,168 - ECD_04131 0.28 +0.6
4,403,168 - ECD_04131 0.28 +0.5
4,403,168 - ECD_04131 0.28 +0.3
4,403,170 + ECD_04131 0.28 +0.5
4,403,171 - ECD_04131 0.28 -0.5
4,403,171 - ECD_04131 0.28 +0.7
4,403,173 + ECD_04131 0.28 +1.6
4,403,205 + ECD_04131 0.31 +1.0
4,403,206 - ECD_04131 0.31 -0.5
4,403,232 + ECD_04131 0.33 +0.1
4,403,233 - ECD_04131 0.33 -0.2
4,403,233 - ECD_04131 0.33 -0.0
4,403,247 + ECD_04131 0.34 +0.2
4,403,278 - ECD_04131 0.36 -1.1
4,403,305 - ECD_04131 0.38 +0.3
4,403,305 - ECD_04131 0.38 +0.5
4,403,316 + ECD_04131 0.39 +0.1
4,403,317 - ECD_04131 0.39 +1.1
4,403,370 + ECD_04131 0.43 -0.5
4,403,475 + ECD_04131 0.51 +1.4
4,403,483 - ECD_04131 0.52 +1.2
4,403,494 + ECD_04131 0.53 +0.6
4,403,494 + ECD_04131 0.53 +0.1
4,403,559 + ECD_04131 0.58 +0.8
4,403,560 - ECD_04131 0.58 +0.4
4,403,560 - ECD_04131 0.58 +0.3
4,403,581 - ECD_04131 0.59 +0.6
4,403,588 + ECD_04131 0.60 +0.4
4,403,705 + ECD_04131 0.69 +1.3
4,403,706 - ECD_04131 0.69 +1.2
4,403,706 - ECD_04131 0.69 +0.3
4,403,731 + ECD_04131 0.71 -1.0
4,403,732 - ECD_04131 0.71 +0.0
4,403,732 - ECD_04131 0.71 +1.0
4,403,732 - ECD_04131 0.71 +0.1
4,403,740 - ECD_04131 0.71 -0.1
4,403,743 + ECD_04131 0.72 +1.1
4,403,743 + ECD_04131 0.72 +2.0
4,403,743 + ECD_04131 0.72 -0.0
4,403,744 - ECD_04131 0.72 +0.1
4,403,868 + ECD_04131 0.81 -1.0
4,403,970 + ECD_04131 0.89 +0.6
4,403,971 - ECD_04131 0.89 -0.2
4,404,076 - +0.9
4,404,118 - +0.4
4,404,193 - +1.2
4,404,357 - ECD_04132 0.23 -1.5
4,404,404 + ECD_04132 0.29 -0.7
4,404,518 + ECD_04132 0.44 +0.3
4,404,519 - ECD_04132 0.44 +0.7
4,404,521 + ECD_04132 0.45 +0.9
4,404,669 - ECD_04132 0.64 +1.3
4,404,708 - ECD_04132 0.69 +1.0
4,404,749 + ECD_04132 0.74 +0.4
4,404,851 - ECD_04132 0.88 +2.1
4,404,948 - +1.5

Or see this region's nucleotide sequence