Strain Fitness in Escherichia coli BL21 around ECD_04118

Experiment: Bas52

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_04116 and ECD_04117 are separated by 70 nucleotidesECD_04117 and ECD_04118 are separated by 144 nucleotidesECD_04118 and ECD_04119 are separated by 122 nucleotides ECD_04116: ECD_04116 - c-di-GMP-binding biofilm dispersal mediator protein, at 4,384,982 to 4,385,695 _04116 ECD_04117: ECD_04117 - transcriptional repressor for divergent bdcA, at 4,385,766 to 4,386,359 _04117 ECD_04118: ECD_04118 - biofilm modulator regulated by toxins; DUF386 family protein, cupin superfamily protein, at 4,386,504 to 4,386,956 _04118 ECD_04119: ECD_04119 - SopA-central-domain-like hexapeptide repeat protein, at 4,387,079 to 4,388,731 _04119 Position (kb) 4386 4387Strain fitness (log2 ratio) -1 0 1 2 3at 4385.597 kb on + strand, within ECD_04116at 4385.598 kb on - strand, within ECD_04116at 4385.598 kb on - strand, within ECD_04116at 4385.627 kb on + strandat 4385.627 kb on + strandat 4385.627 kb on + strandat 4385.628 kb on - strandat 4385.628 kb on - strandat 4385.628 kb on - strandat 4385.719 kb on - strandat 4385.957 kb on + strand, within ECD_04117at 4385.957 kb on + strand, within ECD_04117at 4385.976 kb on + strand, within ECD_04117at 4385.976 kb on + strand, within ECD_04117at 4385.994 kb on - strand, within ECD_04117at 4386.075 kb on + strand, within ECD_04117at 4386.077 kb on + strand, within ECD_04117at 4386.165 kb on + strand, within ECD_04117at 4386.189 kb on + strand, within ECD_04117at 4386.189 kb on + strand, within ECD_04117at 4386.190 kb on - strand, within ECD_04117at 4386.195 kb on + strand, within ECD_04117at 4386.195 kb on + strand, within ECD_04117at 4386.195 kb on + strand, within ECD_04117at 4386.195 kb on + strand, within ECD_04117at 4386.195 kb on + strand, within ECD_04117at 4386.196 kb on - strand, within ECD_04117at 4386.198 kb on - strand, within ECD_04117at 4386.518 kb on + strandat 4386.519 kb on - strandat 4386.524 kb on + strandat 4386.553 kb on + strand, within ECD_04118at 4386.572 kb on + strand, within ECD_04118at 4386.572 kb on + strand, within ECD_04118at 4386.639 kb on + strand, within ECD_04118at 4386.640 kb on - strand, within ECD_04118at 4386.640 kb on - strand, within ECD_04118at 4386.794 kb on + strand, within ECD_04118at 4386.844 kb on + strand, within ECD_04118

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas52
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4,385,597 + ECD_04116 0.86 -0.5
4,385,598 - ECD_04116 0.86 +0.1
4,385,598 - ECD_04116 0.86 +1.5
4,385,627 + +0.8
4,385,627 + +0.1
4,385,627 + -0.3
4,385,628 - +0.3
4,385,628 - +1.0
4,385,628 - +1.0
4,385,719 - -0.2
4,385,957 + ECD_04117 0.32 +0.3
4,385,957 + ECD_04117 0.32 +1.7
4,385,976 + ECD_04117 0.35 +1.1
4,385,976 + ECD_04117 0.35 +1.1
4,385,994 - ECD_04117 0.38 +1.1
4,386,075 + ECD_04117 0.52 +0.7
4,386,077 + ECD_04117 0.52 +0.0
4,386,165 + ECD_04117 0.67 +0.5
4,386,189 + ECD_04117 0.71 +0.3
4,386,189 + ECD_04117 0.71 +0.1
4,386,190 - ECD_04117 0.71 -0.1
4,386,195 + ECD_04117 0.72 +1.7
4,386,195 + ECD_04117 0.72 +0.8
4,386,195 + ECD_04117 0.72 +0.3
4,386,195 + ECD_04117 0.72 -0.1
4,386,195 + ECD_04117 0.72 +0.6
4,386,196 - ECD_04117 0.72 +1.2
4,386,198 - ECD_04117 0.73 +0.7
4,386,518 + -0.3
4,386,519 - +0.2
4,386,524 + -0.3
4,386,553 + ECD_04118 0.11 +0.2
4,386,572 + ECD_04118 0.15 -0.1
4,386,572 + ECD_04118 0.15 +0.5
4,386,639 + ECD_04118 0.30 +0.1
4,386,640 - ECD_04118 0.30 +1.0
4,386,640 - ECD_04118 0.30 +1.0
4,386,794 + ECD_04118 0.64 +3.5
4,386,844 + ECD_04118 0.75 +0.3

Or see this region's nucleotide sequence