Strain Fitness in Escherichia coli BL21 around ECD_03798

Experiment: Bas52

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03797 and ECD_03798 overlap by 4 nucleotidesECD_03798 and ECD_03799 are separated by 149 nucleotidesECD_03799 and ECD_03800 are separated by 148 nucleotides ECD_03797: ECD_03797 - sensory histidine kinase in two-component regulatory system with CpxR, at 4,011,524 to 4,012,897 _03797 ECD_03798: ECD_03798 - response regulator in two-component regulatory system with CpxA, at 4,012,894 to 4,013,592 _03798 ECD_03799: ECD_03799 - inhibitor of the cpx response; periplasmic adaptor protein, at 4,013,742 to 4,014,242 _03799 ECD_03800: ECD_03800 - ferrous iron and zinc transporter, at 4,014,391 to 4,015,293 _03800 Position (kb) 4012 4013 4014Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 4012.010 kb on - strand, within ECD_03797at 4012.010 kb on - strand, within ECD_03797at 4012.325 kb on - strand, within ECD_03797at 4012.477 kb on - strand, within ECD_03797at 4012.531 kb on - strand, within ECD_03797at 4012.670 kb on - strand, within ECD_03797at 4012.670 kb on - strand, within ECD_03797at 4012.670 kb on - strand, within ECD_03797at 4012.704 kb on - strand, within ECD_03797at 4012.893 kb on - strandat 4013.050 kb on + strand, within ECD_03798at 4013.304 kb on - strand, within ECD_03798at 4013.368 kb on - strand, within ECD_03798at 4013.405 kb on - strand, within ECD_03798at 4013.543 kb on - strandat 4013.543 kb on - strandat 4013.576 kb on - strandat 4013.598 kb on - strandat 4013.638 kb on - strandat 4013.650 kb on + strandat 4013.650 kb on + strandat 4013.650 kb on + strandat 4013.650 kb on + strandat 4013.651 kb on - strandat 4013.651 kb on - strandat 4013.651 kb on - strandat 4013.651 kb on - strandat 4013.661 kb on - strandat 4013.695 kb on - strandat 4013.749 kb on + strandat 4013.749 kb on + strandat 4013.749 kb on + strandat 4013.749 kb on + strandat 4013.749 kb on + strandat 4013.749 kb on + strandat 4013.749 kb on + strandat 4013.750 kb on - strandat 4013.750 kb on - strandat 4013.750 kb on - strandat 4013.753 kb on + strandat 4013.794 kb on + strand, within ECD_03799at 4013.794 kb on + strand, within ECD_03799at 4013.849 kb on + strand, within ECD_03799at 4013.861 kb on + strand, within ECD_03799at 4013.861 kb on + strand, within ECD_03799at 4013.873 kb on + strand, within ECD_03799at 4013.874 kb on - strand, within ECD_03799at 4013.874 kb on - strand, within ECD_03799at 4013.874 kb on - strand, within ECD_03799at 4013.874 kb on - strand, within ECD_03799at 4013.887 kb on + strand, within ECD_03799at 4013.887 kb on + strand, within ECD_03799at 4013.887 kb on + strand, within ECD_03799at 4013.888 kb on - strand, within ECD_03799at 4013.927 kb on + strand, within ECD_03799at 4013.927 kb on + strand, within ECD_03799at 4013.928 kb on - strand, within ECD_03799at 4013.928 kb on - strand, within ECD_03799at 4013.928 kb on - strand, within ECD_03799at 4013.928 kb on - strand, within ECD_03799at 4013.960 kb on + strand, within ECD_03799at 4014.103 kb on - strand, within ECD_03799at 4014.103 kb on - strand, within ECD_03799at 4014.212 kb on - strandat 4014.218 kb on + strandat 4014.218 kb on + strandat 4014.243 kb on + strandat 4014.264 kb on + strandat 4014.332 kb on - strandat 4014.359 kb on + strandat 4014.361 kb on + strandat 4014.361 kb on + strandat 4014.362 kb on - strandat 4014.362 kb on - strandat 4014.387 kb on - strandat 4014.387 kb on - strandat 4014.390 kb on + strandat 4014.390 kb on + strandat 4014.391 kb on - strandat 4014.403 kb on + strandat 4014.458 kb on + strandat 4014.459 kb on - strandat 4014.487 kb on + strand, within ECD_03800at 4014.487 kb on + strand, within ECD_03800at 4014.487 kb on + strand, within ECD_03800at 4014.488 kb on - strand, within ECD_03800at 4014.488 kb on - strand, within ECD_03800at 4014.561 kb on - strand, within ECD_03800at 4014.575 kb on - strand, within ECD_03800

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas52
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4,012,010 - ECD_03797 0.35 +0.9
4,012,010 - ECD_03797 0.35 -0.2
4,012,325 - ECD_03797 0.58 +0.8
4,012,477 - ECD_03797 0.69 +0.2
4,012,531 - ECD_03797 0.73 +0.5
4,012,670 - ECD_03797 0.83 +0.4
4,012,670 - ECD_03797 0.83 +0.1
4,012,670 - ECD_03797 0.83 +0.0
4,012,704 - ECD_03797 0.86 -0.3
4,012,893 - +0.5
4,013,050 + ECD_03798 0.22 +4.1
4,013,304 - ECD_03798 0.59 +2.6
4,013,368 - ECD_03798 0.68 +4.0
4,013,405 - ECD_03798 0.73 +2.8
4,013,543 - +2.5
4,013,543 - +1.7
4,013,576 - +3.7
4,013,598 - +2.3
4,013,638 - -2.2
4,013,650 + +4.1
4,013,650 + +3.1
4,013,650 + +2.0
4,013,650 + +1.9
4,013,651 - -4.3
4,013,651 - -2.9
4,013,651 - -3.4
4,013,651 - -1.4
4,013,661 - -3.5
4,013,695 - -4.0
4,013,749 + +2.0
4,013,749 + +0.2
4,013,749 + +0.0
4,013,749 + +0.5
4,013,749 + +0.3
4,013,749 + -0.1
4,013,749 + +2.7
4,013,750 - -1.2
4,013,750 - -2.2
4,013,750 - -3.6
4,013,753 + +0.8
4,013,794 + ECD_03799 0.10 +0.5
4,013,794 + ECD_03799 0.10 +0.7
4,013,849 + ECD_03799 0.21 -0.3
4,013,861 + ECD_03799 0.24 +1.1
4,013,861 + ECD_03799 0.24 +0.2
4,013,873 + ECD_03799 0.26 +0.7
4,013,874 - ECD_03799 0.26 -4.2
4,013,874 - ECD_03799 0.26 -3.3
4,013,874 - ECD_03799 0.26 -3.4
4,013,874 - ECD_03799 0.26 -3.4
4,013,887 + ECD_03799 0.29 +0.2
4,013,887 + ECD_03799 0.29 +0.6
4,013,887 + ECD_03799 0.29 +0.8
4,013,888 - ECD_03799 0.29 -1.2
4,013,927 + ECD_03799 0.37 -1.1
4,013,927 + ECD_03799 0.37 -1.5
4,013,928 - ECD_03799 0.37 -2.4
4,013,928 - ECD_03799 0.37 -3.0
4,013,928 - ECD_03799 0.37 -2.0
4,013,928 - ECD_03799 0.37 -1.2
4,013,960 + ECD_03799 0.44 -0.9
4,014,103 - ECD_03799 0.72 +0.8
4,014,103 - ECD_03799 0.72 -4.1
4,014,212 - -1.0
4,014,218 + +1.8
4,014,218 + -0.3
4,014,243 + -0.2
4,014,264 + +0.8
4,014,332 - -2.2
4,014,359 + -0.0
4,014,361 + -0.1
4,014,361 + -0.3
4,014,362 - -4.4
4,014,362 - -2.4
4,014,387 - -1.3
4,014,387 - -2.1
4,014,390 + +0.8
4,014,390 + -0.2
4,014,391 - -1.5
4,014,403 + -0.1
4,014,458 + -0.3
4,014,459 - -0.2
4,014,487 + ECD_03800 0.11 -0.2
4,014,487 + ECD_03800 0.11 -0.2
4,014,487 + ECD_03800 0.11 -1.4
4,014,488 - ECD_03800 0.11 -0.7
4,014,488 - ECD_03800 0.11 -0.5
4,014,561 - ECD_03800 0.19 +0.2
4,014,575 - ECD_03800 0.20 +0.7

Or see this region's nucleotide sequence